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I'd like to ... make it easier to access phenology data from Herbaria #251

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jhpoelen opened this issue Feb 1, 2023 · 15 comments
Open

I'd like to ... make it easier to access phenology data from Herbaria #251

jhpoelen opened this issue Feb 1, 2023 · 15 comments

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@jhpoelen
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jhpoelen commented Feb 1, 2023 •
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Hi!

More info about our phenological data and how to access it: https://www.capturingcaliforniasflowers.org/phenology.html

California Phenology Thematic Collections Network (CAP-TCN; https://www.capturingcaliforniasflowers.org/)

https://cch2.org/portal/index.php
@jhpoelen
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jhpoelen commented Feb 1, 2023

It appears that folks in the collections have tons of phenology data, and are eager to share it.

And, some didn't know about the Open Trait Network. An idea to broadcast the Open Trait Network at the Society for Preservation Of Natural History Collection conference this year? https://spnhc.org/spnhc-2023-call-for-abstracts/ .

@jhpoelen
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jhpoelen commented Feb 1, 2023

Here's an RSS feed for all the herbaria collections and their associated datasets:

https://cch2.org/portal/content/dwca/rss.xml

<?xml version="1.0" encoding="UTF-8"?>
<rss version="2.0">
  <channel>
    <title>CCH2 Portal Darwin Core Archive rss feed</title>
    <link>https://cch2.org/portal/</link>
    <description>CCH2 Portal Darwin Core Archive rss feed</description>
    <language>en-us</language>
    <item collid="58">
      <title>BFRS DwC-Archive</title>
      <image/>
      <description>Darwin Core Archive for BFRS - Blodgett Forest Research Station</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=58</guid>
      <guid>739182be-72d9-41f6-ac50-066a3c22632f</guid>
      <emllink>https://cch2.org/portal/content/dwca/BFRS_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/BFRS_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="2">
      <title>BLMAR DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/blmar.jpg</image>
      <description>Darwin Core Archive for BLMAR - BLM Arcata Field Office Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=2</guid>
      <guid>63a6e390-e84a-4f49-b306-c5ff5a87ef39</guid>
      <emllink>https://cch2.org/portal/content/dwca/BLMAR_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/BLMAR_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="14">
      <title>BLMRD DwC-Archive</title>
      <image>https://swbiodiversity.org/seinet/content/collicon/blm-slv.jpg</image>
      <description>Darwin Core Archive for BLMRD - BLM Herbarium - Redding FO</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=14</guid>
      <guid>3818de05-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/BLMRD_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/BLMRD_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="98">
      <title>BORR DwC-Archive</title>
      <image>https://www.cch2.org/portal/content/collicon/borr.jpg</image>
      <description>Darwin Core Archive for BORR - UC Berkeley, Blue Oak Ranch Reserve</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=98</guid>
      <guid>7e26a296-0169-45a0-b946-9bcedd9684ff</guid>
      <emllink>https://cch2.org/portal/content/dwca/BORR_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/BORR_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="70">
      <title>CATA-Algae DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/cata-algae.png</image>
      <description>Darwin Core Archive for CATA - Catalina Island Conservancy Herbarium Algae</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=70</guid>
      <guid>e61652be-ec77-43f9-8058-ebf06244a36e</guid>
      <emllink>https://cch2.org/portal/content/dwca/CATA-Algae_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/CATA-Algae_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="52">
      <title>CATA-Vascular DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/cata-vascular.png</image>
      <description>Darwin Core Archive for CATA - Catalina Island Conservancy Herbarium Vascular Plants</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=52</guid>
      <guid>25d4de3b-3bf3-40ec-aed6-ca26cf996f7b</guid>
      <emllink>https://cch2.org/portal/content/dwca/CATA-Vascular_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/CATA-Vascular_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="44">
      <title>CHSC-VascularPlants DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/chsc.gif</image>
      <description>Darwin Core Archive for CHSC - CSU Chico, Chico State Herbarium - Vascular Plants</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=44</guid>
      <guid>6a942843-3cb1-4643-a475-24df2d2ba49f</guid>
      <emllink>https://cch2.org/portal/content/dwca/CHSC-VascularPlants_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/CHSC-VascularPlants_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="42">
      <title>CSLA DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/csla.png</image>
      <description>Darwin Core Archive for CSLA - Cal State LA Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=42</guid>
      <guid>9a7f2f77-3288-4d40-8baa-2f55b8450b7f</guid>
      <emllink>https://cch2.org/portal/content/dwca/CSLA_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/CSLA_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="47">
      <title>CSUSB DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/csusb.jpg</image>
      <description>Darwin Core Archive for CSUSB - California State University San Bernardino</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=47</guid>
      <guid>eb19159e-023a-405e-9970-cb1a1c0c1ce5</guid>
      <emllink>https://cch2.org/portal/content/dwca/CSUSB_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/CSUSB_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="39">
      <title>DAV DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/dav.png</image>
      <description>Darwin Core Archive for DAV - UC Davis Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=39</guid>
      <guid>cc54a5fd-2e20-4ea6-8871-b2af436d9de3</guid>
      <emllink>https://cch2.org/portal/content/dwca/DAV_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/DAV_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="77">
      <title>ELH DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/elh.jpg</image>
      <description>Darwin Core Archive for ELH - BLM, Eagle Lake Field Office Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=77</guid>
      <guid>3daa70e8-2d7f-47e2-85f8-72d61b362ce2</guid>
      <emllink>https://cch2.org/portal/content/dwca/ELH_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/ELH_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="38">
      <title>FSC DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/fsc.png</image>
      <description>Darwin Core Archive for FSC - Fresno State Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=38</guid>
      <guid>8126927b-7459-411e-acc7-7aa06631920b</guid>
      <emllink>https://cch2.org/portal/content/dwca/FSC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/FSC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="73">
      <title>GDRC DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/gdrc.jpg</image>
      <description>Darwin Core Archive for GDRC - Green Diamond Resource Co.</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=73</guid>
      <guid>f569bd6d-7d51-4c2e-b22d-85a66b886872</guid>
      <emllink>https://cch2.org/portal/content/dwca/GDRC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/GDRC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="9">
      <title>GMDRC DwC-Archive</title>
      <image>https://swbiodiversity.org/seinet/content/collicon/gmdrc.jpg</image>
      <description>Darwin Core Archive for GMDRC - Sweeney Granite Mountains Desert Research Center</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=9</guid>
      <guid>3818d582-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/GMDRC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/GMDRC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="59">
      <title>HREC DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/hrec.jpg</image>
      <description>Darwin Core Archive for HREC - Hopland Research and Extension Center</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=59</guid>
      <guid>e506cd1d-caf1-4a14-ba5b-c1e247ba9b98</guid>
      <emllink>https://cch2.org/portal/content/dwca/HREC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/HREC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="45">
      <title>HSC DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/hsc.png</image>
      <description>Darwin Core Archive for HSC - Humboldt State University Vascular Plant Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=45</guid>
      <guid>eaef47cb-6ed3-4439-b974-f05e4f65165e</guid>
      <emllink>https://cch2.org/portal/content/dwca/HSC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/HSC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="37">
      <title>IRVC DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/irvc.png</image>
      <description>Darwin Core Archive for IRVC - University of California, Irvine Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=37</guid>
      <guid>fbf9653f-f51b-4e99-9820-d65161437a24</guid>
      <emllink>https://cch2.org/portal/content/dwca/IRVC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/IRVC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="53">
      <title>JROH DwC-Archive</title>
      <image>https://www.cch2.org/portal/content/collicon/jroh.jpg</image>
      <description>Darwin Core Archive for JROH - Jasper Ridge Biological Preserve, Stanford University</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=53</guid>
      <guid>c8415d43-4bcc-4a97-81ab-f9879d99cab3</guid>
      <emllink>https://cch2.org/portal/content/dwca/JROH_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/JROH_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="10">
      <title>KNFY DwC-Archive</title>
      <image>https://swbiodiversity.org/seinet/content/collicon/knfy.jpg</image>
      <description>Darwin Core Archive for KNFY - Klamath National Forest Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=10</guid>
      <guid>3818d6db-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/KNFY_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/KNFY_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="34">
      <title>LA DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/la.jpg</image>
      <description>Darwin Core Archive for LA - University of California, Los Angeles Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=34</guid>
      <guid>a70436a2-dfaa-482e-88e0-5193a66b0bfc</guid>
      <emllink>https://cch2.org/portal/content/dwca/LA_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/LA_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="19">
      <title>LOB DwC-Archive</title>
      <image>https://swbiodiversity.org/seinet/content/collicon/lob.jpg</image>
      <description>Darwin Core Archive for LOB - California State University, Long Beach Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=19</guid>
      <guid>3818e5a2-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/LOB_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/LOB_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="86">
      <title>LVNP DwC-Archive</title>
      <image/>
      <description>Darwin Core Archive for LVNP - Lassen Volcanic National Park, U.S. Department of the Interior, National Park Service</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=86</guid>
      <guid>153ce8e2-344a-4904-9f8a-2ace910487bd</guid>
      <emllink>https://cch2.org/portal/content/dwca/LVNP_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/LVNP_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="36">
      <title>MACF DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/macf.png</image>
      <description>Darwin Core Archive for MACF - MacFadden Herbarium, California State University Fullerton</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=36</guid>
      <guid>7591c177-2bde-4641-9b60-32f68cbbd1f4</guid>
      <emllink>https://cch2.org/portal/content/dwca/MACF_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/MACF_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="71">
      <title>MCCC DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/mccc.png</image>
      <description>Darwin Core Archive for MCCC - Mendocino College Coast Center Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=71</guid>
      <guid>f1a594d4-384d-4b3d-a405-a14bed57ffcc</guid>
      <emllink>https://cch2.org/portal/content/dwca/MCCC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/MCCC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="74">
      <title>NCC DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/ncc.jpg</image>
      <description>Darwin Core Archive for NCC - Sonoma State University Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=74</guid>
      <guid>fd58be3c-c462-4d73-8e98-9372d0cca8aa</guid>
      <emllink>https://cch2.org/portal/content/dwca/NCC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/NCC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="12">
      <title>OBI DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/obi.jpg</image>
      <description>Darwin Core Archive for OBI - Robert F. Hoover Herbarium, Cal Poly State University</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=12</guid>
      <guid>3818d95b-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/OBI_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/OBI_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="81">
      <title>OSC DwC-Archive</title>
      <image/>
      <description>Darwin Core Archive for OSC - Oregon State University Vascular Plant Collection</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=81</guid>
      <guid>216e027d-46e2-494d-99e9-02a7aedc13c1</guid>
      <emllink>https://cch2.org/portal/content/dwca/OSC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/OSC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="76">
      <title>PPWD DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/ppwd.jpg</image>
      <description>Darwin Core Archive for PPWD - Stephen J. Barnhart Herbarium at Pepperwood Preserve</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=76</guid>
      <guid>ed6725c2-5a87-4f66-a6ee-e85c3b9ce32d</guid>
      <emllink>https://cch2.org/portal/content/dwca/PPWD_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/PPWD_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="4">
      <title>PUA DwC-Archive</title>
      <image>https://swbiodiversity.org/seinet/content/collicon/pua.gif</image>
      <description>Darwin Core Archive for PUA - Pacific Union College Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=4</guid>
      <guid>3818ca8b-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/PUA_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/PUA_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="89">
      <title>RENO-V DwC-Archive</title>
      <image>https://swbiodiversity.org/seinet/content/collicon/reno.jpg</image>
      <description>Darwin Core Archive for RENO - University of Nevada, Reno Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=89</guid>
      <guid>99daef92-479a-4555-91be-73987df3bc50</guid>
      <emllink>https://cch2.org/portal/content/dwca/RENO-V_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/RENO-V_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="17">
      <title>RSA-VascularPlants DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/rsa-vascularplants.png</image>
      <description>Darwin Core Archive for RSA - California Botanic Garden Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=17</guid>
      <guid>3818e1d3-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/RSA-VascularPlants_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/RSA-VascularPlants_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:15:29</pubDate>
    </item>
    <item collid="16">
      <title>SBBG DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/sbbg.jpg</image>
      <description>Darwin Core Archive for SBBG - Clifton Smith Herbarium, Santa Barbara Botanic Garden</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=16</guid>
      <guid>3818e0aa-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/SBBG_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/SBBG_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="102">
      <title>SCDA DwC-Archive</title>
      <image/>
      <description>Darwin Core Archive for SCDA - Siskiyou County Dept. of Agriculture Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=102</guid>
      <guid>cd23e697-ecec-425e-808b-4075516bfbd9</guid>
      <emllink>https://cch2.org/portal/content/dwca/SCDA_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/SCDA_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="7">
      <title>SCFS DwC-Archive</title>
      <image>https://sernecportal.org/portal/content/collicon/scfs.jpg</image>
      <description>Darwin Core Archive for SCFS - Sagehen Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=7</guid>
      <guid>3818d1b3-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/SCFS_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/SCFS_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="6">
      <title>SDSU DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/sdsu.png</image>
      <description>Darwin Core Archive for SDSU - San Diego State University Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=6</guid>
      <guid>3818d002-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/SDSU_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/SDSU_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="40">
      <title>SFSU DwC-Archive</title>
      <image>https://www.cch2.org/portal/content/collicon/sfsu.png</image>
      <description>Darwin Core Archive for SFSU - Vascular Plants of the Harry D. Thiers Herbarium at San Francisco State University</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=40</guid>
      <guid>5805f8f3-2733-4c87-bca8-0fd1644490c2</guid>
      <emllink>https://cch2.org/portal/content/dwca/SFSU_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/SFSU_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="41">
      <title>SFV DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/sfv.jpg</image>
      <description>Darwin Core Archive for SFV - California State University, Northridge</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=41</guid>
      <guid>f62b4819-3195-4053-a2dc-07431438f3e6</guid>
      <emllink>https://cch2.org/portal/content/dwca/SFV_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/SFV_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="69">
      <title>SHTC DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/shtc.png</image>
      <description>Darwin Core Archive for SHTC - CSU Stanislaus Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=69</guid>
      <guid>7d1c54a8-bd69-4aaa-bf3d-785f0fd4af43</guid>
      <emllink>https://cch2.org/portal/content/dwca/SHTC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/SHTC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="18">
      <title>SJSU DwC-Archive</title>
      <image>https://swbiodiversity.org/seinet/content/collicon/sjsu.jpg</image>
      <description>Darwin Core Archive for SJSU - Carl W. Sharsmith Herbarium, San Jose State University</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=18</guid>
      <guid>3818e471-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/SJSU_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/SJSU_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="82">
      <title>SOC DwC-Archive</title>
      <image/>
      <description>Darwin Core Archive for SOC - Southern Oregon University Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=82</guid>
      <guid>3d9e914e-d5a2-4aed-9b67-6913841a7cff</guid>
      <emllink>https://cch2.org/portal/content/dwca/SOC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/SOC_DwC-A.zip</link>
      <pubDate>Tue, 03 Jan 2023 16:10:57</pubDate>
    </item>
    <item collid="15">
      <title>SPIF DwC-Archive</title>
      <image>https://nansh.org/portal/content/collicon/spif.jpg</image>
      <description>Darwin Core Archive for SPIF - Sierra Pacific Industries-Forestry</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=15</guid>
      <guid>3818df51-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/SPIF_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/SPIF_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="87">
      <title>STNF DwC-Archive</title>
      <image/>
      <description>Darwin Core Archive for STNF - Shasta-Trinity National Forest Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=87</guid>
      <guid>a3c24120-c916-42d1-ac52-d8d9e2992592</guid>
      <emllink>https://cch2.org/portal/content/dwca/STNF_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/STNF_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="75">
      <title>THRI DwC-Archive</title>
      <image/>
      <description>Darwin Core Archive for THRI - Herbarium of Sequoia and Kings Canyon National Parks</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=75</guid>
      <guid>da751016-8e3d-4ba8-9060-439bb741a8a7</guid>
      <emllink>https://cch2.org/portal/content/dwca/THRI_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/THRI_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="94">
      <title>UC-Bryophytes DwC-Archive</title>
      <image/>
      <description>Darwin Core Archive for UC - University of California, Berkeley - Bryophytes</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=94</guid>
      <guid>e1a6a47c-6204-48b9-b49c-5739dcd5e48c</guid>
      <emllink>https://cch2.org/portal/content/dwca/UC-Bryophytes_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/UC-Bryophytes_DwC-A.zip</link>
      <pubDate>Tue, 03 Jan 2023 16:10:57</pubDate>
    </item>
    <item collid="3">
      <title>UCR DwC-Archive</title>
      <image>https://swbiodiversity.org/seinet/content/collicon/ucr.jpg</image>
      <description>Darwin Core Archive for UCR - University of California, Riverside Herbarium - Vascular Plants</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=3</guid>
      <guid>3818c5b4-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/UCR_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/UCR_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="35">
      <title>UCSB DwC-Archive</title>
      <image>https://cch2.org/portal/content/collicon/ucsb.jpg</image>
      <description>Darwin Core Archive for UCSB - University of California Santa Barbara Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=35</guid>
      <guid>f7e112f9-92c5-455c-a6c4-709b0f8d7f73</guid>
      <emllink>https://cch2.org/portal/content/dwca/UCSB_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/UCSB_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="13">
      <title>UCSC DwC-Archive</title>
      <image>https://nansh.org/portal/content/collicon/ucsc.jpg</image>
      <description>Darwin Core Archive for UCSC Herbarium - Kenneth S. Norris Center for Natural History, University of California Santa Cruz</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=13</guid>
      <guid>3818da9e-b6a4-11e8-b408-001a64db2964</guid>
      <emllink>https://cch2.org/portal/content/dwca/UCSC_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/UCSC_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
    <item collid="103">
      <title>WHIS DwC-Archive</title>
      <image/>
      <description>Darwin Core Archive for WHIS - Whiskeytown National Recreation Area Herbarium</description>
      <guid>https://cch2.org/portal/collections/misc/collprofiles.php?collid=103</guid>
      <guid>67a7c27f-5689-40e0-a22e-4d8232264ddb</guid>
      <emllink>https://cch2.org/portal/content/dwca/WHIS_DwC-A.eml</emllink>
      <type>DWCA</type>
      <recordType>DWCA</recordType>
      <link>https://cch2.org/portal/content/dwca/WHIS_DwC-A.zip</link>
      <pubDate>Wed, 01 Feb 2023 10:26:11</pubDate>
    </item>
  </channel>
</rss>

@jhpoelen
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jhpoelen commented Feb 1, 2023

hI @themerekat - good to talk to you today.

I just had a look at some DwC-A associated with the CCH2 network:

https://cch2.org/portal/content/dwca/BFRS_DwC-A.zip
https://cch2.org/portal/content/dwca/BLMAR_DwC-A.zip
https://cch2.org/portal/content/dwca/BLMRD_DwC-A.zip
https://cch2.org/portal/content/dwca/BORR_DwC-A.zip
https://cch2.org/portal/content/dwca/CATA-Algae_DwC-A.zip
https://cch2.org/portal/content/dwca/CATA-Vascular_DwC-A.zip
https://cch2.org/portal/content/dwca/CHSC-VascularPlants_DwC-A.zip
https://cch2.org/portal/content/dwca/CSLA_DwC-A.zip
https://cch2.org/portal/content/dwca/CSUSB_DwC-A.zip
https://cch2.org/portal/content/dwca/DAV_DwC-A.zip
https://cch2.org/portal/content/dwca/ELH_DwC-A.zip
https://cch2.org/portal/content/dwca/FSC_DwC-A.zip
https://cch2.org/portal/content/dwca/GDRC_DwC-A.zip
https://cch2.org/portal/content/dwca/GMDRC_DwC-A.zip
https://cch2.org/portal/content/dwca/HREC_DwC-A.zip
https://cch2.org/portal/content/dwca/HSC_DwC-A.zip
https://cch2.org/portal/content/dwca/IRVC_DwC-A.zip
https://cch2.org/portal/content/dwca/JROH_DwC-A.zip
https://cch2.org/portal/content/dwca/KNFY_DwC-A.zip
https://cch2.org/portal/content/dwca/LA_DwC-A.zip
https://cch2.org/portal/content/dwca/LOB_DwC-A.zip
https://cch2.org/portal/content/dwca/LVNP_DwC-A.zip
https://cch2.org/portal/content/dwca/MACF_DwC-A.zip
https://cch2.org/portal/content/dwca/MCCC_DwC-A.zip
https://cch2.org/portal/content/dwca/NCC_DwC-A.zip
https://cch2.org/portal/content/dwca/OBI_DwC-A.zip
https://cch2.org/portal/content/dwca/OSC_DwC-A.zip
https://cch2.org/portal/content/dwca/PPWD_DwC-A.zip
https://cch2.org/portal/content/dwca/PUA_DwC-A.zip
https://cch2.org/portal/content/dwca/RENO-V_DwC-A.zip
https://cch2.org/portal/content/dwca/RSA-VascularPlants_DwC-A.zip
https://cch2.org/portal/content/dwca/SBBG_DwC-A.zip
https://cch2.org/portal/content/dwca/SCDA_DwC-A.zip
https://cch2.org/portal/content/dwca/SCFS_DwC-A.zip
https://cch2.org/portal/content/dwca/SDSU_DwC-A.zip
https://cch2.org/portal/content/dwca/SFSU_DwC-A.zip
https://cch2.org/portal/content/dwca/SFV_DwC-A.zip
https://cch2.org/portal/content/dwca/SHTC_DwC-A.zip
https://cch2.org/portal/content/dwca/SJSU_DwC-A.zip
https://cch2.org/portal/content/dwca/SOC_DwC-A.zip
https://cch2.org/portal/content/dwca/SPIF_DwC-A.zip
https://cch2.org/portal/content/dwca/STNF_DwC-A.zip
https://cch2.org/portal/content/dwca/THRI_DwC-A.zip
https://cch2.org/portal/content/dwca/UC-Bryophytes_DwC-A.zip
https://cch2.org/portal/content/dwca/UCR_DwC-A.zip
https://cch2.org/portal/content/dwca/UCSB_DwC-A.zip
https://cch2.org/portal/content/dwca/UCSC_DwC-A.zip
https://cch2.org/portal/content/dwca/WHIS_DwC-A.zip

And, for some reason, none of the meta.xml in the DwC-A mentioned MeasurementOrFact .

I was expected this extension to contain the phenological data associated with the collections.

Can you help me understand where I should look for the phenology data?

@jhpoelen
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jhpoelen commented Feb 1, 2023

method used:

preston track https://cch2.org/portal/content/dwca/rss.xml

followed by

preston alias -l tsv\
 | grep zip\
  | cut -f3\
 | parallel preston cat 'zip:{1}!/meta.xml'\
 | grep Measurement

@themerekat
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I think the measurementOrFact file isn't included in the default Darwin Core Archives because nobody (GBIF/iDigBio) takes them and/or displays them. You can download them separately (see here: https://www.capturingcaliforniasflowers.org/phenology.html)

@jhpoelen
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jhpoelen commented Feb 1, 2023

@themerekat Thanks for your prompt reply.

Great that the phenological data is available for manual download!

screenshot from https://www.capturingcaliforniasflowers.org/phenology.html 2023-02-01.
image

Any way I can access this data in bulk?

Also, just curious, how hard would it be to include the measurementOfFact in the archives?

It seems like we are in a catch-22 - no one is using measurementOrFact so it is not included, and because measurementOfFact is not included, no one can use the data.

@jhpoelen
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jhpoelen commented Feb 1, 2023 •
edited
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If the data were available via the DwC-A, I'd be able to write a little program that extracts all phenological data for all of CCH2, or even all of DwC-A indexed by GBIF/iDigBio, as well as just for a single DwC-A.

@themerekat
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I'm not sure how hard it would be to add, but I'm sure it's on our development roadmap. I've cataloged the feature request here, to be sure: BioKIC/symbiota-docs#299

@jhpoelen
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jhpoelen commented Feb 1, 2023

@themerekat thanks! Is there some other place that the full DwC-A (including the MeasurementOrFact extension) get published? Happy to get creative. . .

@themerekat
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@jhpoelen , no I don't think so. You'd just have to do a manual download of the entire portal with measurementOrFact...

@jhpoelen
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jhpoelen commented Feb 1, 2023

@themerekat ok, I am hoping to give the manual download a try at some point.

Do you have any sense how long it'll take for the BioKIC/symbiota-docs#299 to be discussed? Don't want to get my hopes up, and also would like to get a sense.

I am sure that @seltmann would also want to make sure to include trait data in their https://big-bee.net TCN digitization efforts.

@seltmann - how are you planning to publish your bee trait data? Via Symbiota? Or some other mechanism?

@themerekat
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@jhpoelen sorry, I don't have any sense of timing at the moment. We're hiring a new developer, but we have a lot of backlog of other items to develop in the queue.

@jhpoelen
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jhpoelen commented Feb 1, 2023 •
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@themerekat ok thanks for letting me know. I was hoping there'd be a checkbox configuration item in portal export settings, and it seems like there's more to it than that. As you can probably tell, I am not a Symbiota expert.

@themerekat
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I'm not an expert on the code either, so it might be relatively straightforward! I just don't know.

@seltmann
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seltmann commented Feb 1, 2023

@jhpoelen @themerekat we said we would export as part of the Big-Bee grant in measurement or fact. Hopefully, it happens and the modifications to Symbiota can be made

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@seltmann @jhpoelen @themerekat