From a409066d9f336ba58724d49d83a8e37f2a3f1dec Mon Sep 17 00:00:00 2001 From: Nezar Abdennur Date: Wed, 24 Jan 2024 17:48:23 -0500 Subject: [PATCH] Update index.md --- index.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/index.md b/index.md index 137ff94..d929427 100644 --- a/index.md +++ b/index.md @@ -8,11 +8,11 @@ We are particularly interested in the 3D organization of chromosomes, and most o 🛠️ For analysis of Hi-C (and related) data, we have a suite of tools: -- [cooler](https://www.github.com/open2c/cooler)[^*] for generation, normalization and storage of interaction matrices +- [cooler](https://www.github.com/open2c/cooler)* for generation, normalization and storage of interaction matrices -- [pairtools](https://www.github.com/open2c/pairtools)[^*] for analysis and filtering of mapped reads +- [pairtools](https://www.github.com/open2c/pairtools)* for analysis and filtering of mapped reads -- [cooltools](https://www.github.com/open2c/cooltools)[^*] for extracting and quantifying features from Hi-C data, including: contacts vs. distance, compartments and saddles, insulation, and peaks +- [cooltools](https://www.github.com/open2c/cooltools)* for extracting and quantifying features from Hi-C data, including: contacts vs. distance, compartments and saddles, insulation, and peaks - [coolpup.py](https://www.github.com/open2c/coolpuppy) for flexible pileup analysis @@ -22,10 +22,11 @@ We are particularly interested in the 3D organization of chromosomes, and most o Additionally, -- [bioframe](https://www.github.com/open2c/bioframe)[^*] provides a framework for genomic data analysis using Pandas DataFrames, including genomic interval arithmetic +- [bioframe](https://www.github.com/open2c/bioframe)* provides a framework for genomic data analysis using Pandas DataFrames, including genomic interval arithmetic - [polychrom](https://www.github.com/open2c/polychrom) simplifies polymer simulations for *in silico* experiments with chromosomes +❤️ Cooler, pairtools, cooltools, and bioframe are [NumFOCUS](https://numfocus.org/)-affiliated projects. 🧬 Interested in 3D genomics? Check out some of our Hi-C data analysis tutorials: @@ -40,4 +41,3 @@ For contributors and community members: - [Authorship policy]({{ site.baseurl }}{% link authorship_policy.md %}) - [Code of conduct]({{ site.baseurl }}{% link code_of_conduct.md %}) -[^*]: **Cooler**, **pairtools**, **cooltools**, and **bioframe** are [NumFOCUS](https://numfocus.org/)-affiliated projects.