Skip to content

Issues: open2c/pairtools

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

42 Open 121 Closed
42 Open 121 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

chrom1, chrom2 and pair_type fields are now required in pairs file header
#264 opened Feb 19, 2025 by js2264
Identical read_len1 and read_len2 reported with different real read lengths in R1&2 pairs
#262 opened Jan 14, 2025 by Phlya
@agalitsyna
5
Could support single cell Hi-C ?
#255 opened Nov 15, 2024 by liufuyan2016
pairtools:Empty of fully duplicated library, can't estimate complexity
#254 opened Nov 4, 2024 by Wong718
8
Pairtools phase - issue with phasing
#253 opened Oct 11, 2024 by ddepierre
convert pairtools result to dense matrix
#252 opened Sep 30, 2024 by BenxiaHu
Python 3.13 removes pipes
#250 opened Sep 13, 2024 by stefanor
1
single-end mode is broken in v1.1.0
#247 opened Sep 4, 2024 by niederhuth
17
Support for lowercase SAM tags in pairtools parse2
#245 opened Jul 30, 2024 by LuJiansen
Extracting contact matrices from pairs file
#243 opened Jul 13, 2024 by arodel21
2
pairtools dedup: invalid value encountered in divide
#242 opened Jun 15, 2024 by gbdnorden
1
Scaling by pairs error
#240 opened May 9, 2024 by DekkerBastiaan
1
Updating the ReadTheDocs
#238 opened Apr 29, 2024 by SaimMomin12
raise an error/warning if chromosome names in .chrom.sizes and bwa index differ too much
#235 opened Apr 10, 2024 by golobor
Wording in pairtools parse2 for --max-insert-size
#232 opened Apr 1, 2024 by bskubi
Memory overconsumption/leak (?) in pairtools restrict
#228 opened Mar 27, 2024 by bskubi
parse vs parse2 difference in default behavior for --flip?
#227 opened Mar 27, 2024 by bskubi
All pairs are corrupt ("XX")
#221 opened Mar 23, 2024 by lu-r-lu
6
stats redesign
#216 opened Mar 17, 2024 by golobor
2
Why reading using pipes rather than another method?
#210 opened Mar 13, 2024 by gdolsten
1
There is no instruction on how to test the project.
#208 opened Feb 25, 2024 by Unique-Usman
pipe error with bwa-mem2.avx512bw (2.2.1)
#207 opened Feb 18, 2024 by pashapu43
1
warning [E::idx_find_and_load] Could not retrieve index file for
#205 opened Jan 24, 2024 by CCCKW
9
'xcats' positional argument error in coverage_by_chrom
#197 opened Dec 19, 2023 by laramiemckenna
4
Parse2 clarification
#193 opened Nov 30, 2023 by NMaziak
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.