Repositories list

• biocblog

  Public
  A Quarto blog for Bioconductor community

  blogcommunityr+ 4bioconductorhacktoberfestquartohacktoberfest2022

  HTML

  •28•10•7•1•Updated Jan 11, 2025Jan 11, 2025

• gbcc2025

  Public
  CSS

  •

  MIT License

  •1•0•0•0•Updated Jan 11, 2025Jan 11, 2025

• BiocSlack

  Public
  CSS

  •

  MIT License

  •0•1•0•0•Updated Jan 11, 2025Jan 11, 2025

• BiocHubsIngestR

  Public
  Helper package for users to upload data to temporary BiocHubsIngest endpoints

  R

  •

  MIT License

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• hubsingest

  Public
  Scripts to facilitate ingestion at temporary endpoints for data targeting the Bioconductor Hubs

  Shell

  •

  MIT License

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• bioconductor_docker

  Public
  Docker Containers for Bioconductor

  docker-imagebioconductorbioconductor-containers

  Shell

  •

  Artistic License 2.0

  •31•74•16•3•Updated Jan 10, 2025Jan 10, 2025

• EuroBioC2025

  Public
  Website of the European Bioconductor Conference 2025

  conferencebioconductoreuropean

  CSS

  •3•2•0•0•Updated Jan 10, 2025Jan 10, 2025

• bio-web-stats

  Public
  Code base for replacement of stats.bioconductor.org (download_stats)

  Python

  •0•1•3•0•Updated Jan 9, 2025Jan 9, 2025

• BBS

  Public
  The Bioconductor Build System

  Shell

  •11•9•48•2•Updated Jan 9, 2025Jan 9, 2025

• MatrixGenerics

  Public
  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

  bioconductor-packagecore-package

  R

  •1•12•5•0•Updated Jan 9, 2025Jan 9, 2025

• S4Vectors

  Public
  Foundation of vector-like and list-like containers in Bioconductor

  bioconductor-packagecore-package

  R

  •21•18•24•2•Updated Jan 8, 2025Jan 8, 2025

• AnVIL

  Public
  Interact with AnVIL and Leonardo projects

  R

  •10•8•11•0•Updated Jan 7, 2025Jan 7, 2025

• VariantAnnotation

  Public
  Annotation of Genetic Variants

  bioconductor-packagecore-package

  R

  •20•27•31•1•Updated Jan 7, 2025Jan 7, 2025

• XVector

  Public
  Foundation of external vector representation and manipulation in Bioconductor

  bioconductor-packagecore-package

  C

  •4•2•1•1•Updated Jan 7, 2025Jan 7, 2025

• bioconductor.org

  Public
  Source code for the Bioconductor website

  websitebioconductor

  HTML

  •40•25•13•12•Updated Jan 7, 2025Jan 7, 2025

• bioconductor-training

  Public
  Bioconductor teaching and education committee

  trainingeducationteaching+ 2bioconductorcommittee

  HTML

  •25•43•9•0•Updated Jan 7, 2025Jan 7, 2025

• UniProt.ws

  Public
  R Interface to UniProt Web Services

  bioconductor-packagecore-package

  R

  •7•4•1•0•Updated Jan 2, 2025Jan 2, 2025

• BiocCheck

  Public
  core-servicesbioconductor-package

  R

  •27•8•23•0•Updated Dec 23, 2024Dec 23, 2024

• bioconductor_salt

  Public
  Salt to configure Linux and Mac (x86_64, arm64) for the BBS

  vagrantsaltstackbioconductor

  SaltStack

  •3•1•26•2•Updated Dec 19, 2024Dec 19, 2024

• BiocHubsShiny

  Public
  R

  •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• pkgrevdocs

  Public
  Training Material for Community Reviewers

  TeX

  •

  Other

  •18•8•10•1•Updated Dec 17, 2024Dec 17, 2024

• BiocStickers

  Public
  Stickers for some Bioconductor packages - feel free to contribute and/or modify.

  bioconductorstickers

  R

  •

  Other

  •88•124•7•1•Updated Dec 17, 2024Dec 17, 2024

• Biostrings

  Public
  Efficient manipulation of biological strings

  bioconductor-packagecore-package

  R

  •16•58•14•4•Updated Dec 14, 2024Dec 14, 2024

• bioc2u

  Public
  Building containers and holding some code for bioc2u, an attempt at extending r2u to all bioc packages, and provide precompiled binaries for ubuntu systems

  Shell

  •1•3•3•0•Updated Dec 10, 2024Dec 10, 2024

• pwalign

  Public
  Perform pairwise sequence alignments

  bioconductor-package

  R

  •0•1•7•0•Updated Dec 6, 2024Dec 6, 2024

• bioc2u-builder

  Public
  Scripts for building bioc2u

  0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• r2u

  Public
  Rocker for use with r2u repository

  Shell

  •3•0•0•0•Updated Dec 4, 2024Dec 4, 2024

• bioc_coc_multilingual

  Public
  Multilingual version of the Bioconductor Code of Conduct

  bioconductorhacktoberfest

  CSS

  •15•1•5•0•Updated Dec 3, 2024Dec 3, 2024

• IRanges

  Public
  Foundation of integer range manipulation in Bioconductor

  bioconductor-packagecore-package

  R

  •10•22•9•3•Updated Dec 3, 2024Dec 3, 2024

• DelayedArray

  Public
  A unified framework for working transparently with on-disk and in-memory array-like datasets

  bioconductor-packagecore-packageu24ca289073

  R

  •9•26•18•0•Updated Dec 2, 2024Dec 2, 2024