Repositories list

• hbcd-docs

  Public
  2•1•0•0•Updated Nov 18, 2024Nov 18, 2024

• cdni-brain

  Public
  readthedocs for CDNI collaborators and members

  readthedocs

  2•3•25•1•Updated Nov 15, 2024Nov 15, 2024

• BCP_RTD

  Public
  A ReadTheDocs for the Baby Connectome Project (BCP) Data

  0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• code_infant_me_nordic_paper

  Public
  code for publication "Multi-echo Acquisition and Thermal Denoising Advances Infant Precision Functional Imaging"

  Shell

  •0•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• HBCD_Data_Dictionaries

  Public
  repo to help manage hbcd data dictionaries

  0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• BIBSnet

  Public
  This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.

  Python

  •

  Apache License 2.0

  •8•4•13•3•Updated Nov 14, 2024Nov 14, 2024

• loes-scoring-2

  Public
  Code for automated Loes scoring.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• abcd-rsfmri-training-code

  Public
  Here we provide documentation for loading ABCD 6.0 rsfMRI imaging data and preparing it for data analysis in R and python

  HTML

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• SynthSeg

  Public
  Contrast-agnostic segmentation of MRI scans

  Python

  •95•1•8•0•Updated Nov 8, 2024Nov 8, 2024

• auto-label-emotions

  Public
  Auto-label events that happen in video files.

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• OSPREY_BIDS

  Public
  Houses the Dockerfile used to compile OSPREY

  Python

  •

  MIT License

  •0•1•0•0•Updated Oct 29, 2024Oct 29, 2024

• hbcd_motion_postproc_testing

  Public
  A containerized processing pipeline for the movement sensor data in the HBCD study

  Python

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Oct 28, 2024Oct 28, 2024

• abcd-dicom2bids

  Public
  For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •20•19•3•1•Updated Oct 24, 2024Oct 24, 2024

• hbcdsequences

  Public
  0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• monai

  Public
  MONAI code used by CDNI

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• HBCD-MADE

  Public
  HBCD branch of the MADE pipeline for EEG preprocessing

  MATLAB

  •3•3•0•1•Updated Oct 21, 2024Oct 21, 2024

• abcd-hcp-pipeline

  Public
  bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

  pipelineimage-processingfmri+ 3mri-imagesbids-formatfmri-preprocessing

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •19•50•9•1•Updated Oct 19, 2024Oct 19, 2024

• Seg-Model-Creation-GUI

  Public
  A user interface for nNUnet model training

  Python

  •

  BSD 2-Clause "Simplified" License

  •1•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• dcan-nn-unet

  Public
  Utility programs created for using nn-UNet on ABCD data.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•2•0•0•Updated Oct 18, 2024Oct 18, 2024

• dcan_bold_processing

  Public
  functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelines

  MATLAB

  •

  BSD 3-Clause "New" or "Revised" License

  •7•7•4•1•Updated Oct 18, 2024Oct 18, 2024

• automated-subset-analysis

  Public
  Automated split-half subset reliability analysis scripts written for the ABCD resource paper.

  Python

  •1•1•0•0•Updated Oct 3, 2024Oct 3, 2024

• infant-abcd-bids-pipeline

  Public
  Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.

  dockerfilebidsapp

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •4•8•0•0•Updated Sep 27, 2024Sep 27, 2024

• external-software

  Public
  Tools needed for the DCAN Labs pipelines that we didn't write.

  Dockerfile

  •

  BSD 3-Clause "New" or "Revised" License

  •1•1•0•0•Updated Sep 27, 2024Sep 27, 2024

• abcc_automated_QC

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

• BrainSwipes

  Public
  A crowdsource quality assurance application for use with neuroimaging datasets.

  neuroimagingcrowdsourcingquality-assurance

  Vue

  •

  Apache License 2.0

  •1•0•8•0•Updated Sep 26, 2024Sep 26, 2024

• internal-tools

  Public
  Tools written by DCAN Labs and used, in common, by the DCAN pipelines.

  Dockerfile

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Sep 25, 2024Sep 25, 2024

• brain_coverage

  Public
  Scripts used for calculating cut off in functional MR images

  Python

  •0•0•0•0•Updated Sep 23, 2024Sep 23, 2024

• nhp-abcd-bids-pipeline

  Public
  Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5•4•5•0•Updated Sep 20, 2024Sep 20, 2024

• loes-score-data

  Public
  Stores only de-identified Loes score data

  0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• loes-scoring-explainability

  Public
  Loes scoring interpretability

  Python

  •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024