Skip to content

@FrancisCrickInstitute The Francis Crick Institute

Change the repository type filter

All

    Repositories list

    133 repositories

    • 016_SleepDeprivation

      Public
      Code to analyse data from sleep deprivation experiments
      MATLAB
      •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

    • OmeSliCC

      Public
      Ome(ro) SLide Image Conversion and Compression pipline (OmeSliCC)
      ome-zarr-converter
      Python
      •
      Other
      •1•7•0•0•Updated Feb 18, 2025Feb 18, 2025

    • Enhancing-Reproducibility

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•4•0•0•Updated Feb 12, 2025Feb 12, 2025

    • PooledPEScreen

      Public
      Accompanying code to "High-throughput screening of human genetic variants by pooled prime editing"
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • CALM

      Public
      We are the Image Analysis Group at the Francis Crick Institute. Images are essentially grids of numbers and image analysis allows for the translation of these numbers into insights. Talk to us about analysis prior to acquiring any image data - we're happy to provide all the training you need.
      Jupyter Notebook
      •
      Creative Commons Attribution Share Alike 4.0 International
      •2•1•4•0•Updated Feb 6, 2025Feb 6, 2025

    • Multiplex-Imaging-Registration

      Public
      ImageJ Macro
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • TWOMBLI

      Public
      A ImageJ Plugin implementation of TWOMBLI
      Java
      •4•0•1•0•Updated Feb 6, 2025Feb 6, 2025

    • PARSEG

      Public
      A novel approach to tackle overlapping segmentation in bioimages. Vanessa Dao, ELMI 2024
      Jupyter Notebook
      •
      Creative Commons Attribution Share Alike 4.0 International
      •0•0•6•0•Updated Jan 31, 2025Jan 31, 2025

    • mito-synapto-spine-analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • network_invsync

      Public
      Verify ISE and YAML inventory are synchronized
      Python
      •
      GNU General Public License v3.0
      •0•0•0•11•Updated Jan 14, 2025Jan 14, 2025

    • Segment-Flow

      Public
      Nextflow pipeline for deep learning segmentation models
      Python
      •1•2•0•0•Updated Jan 7, 2025Jan 7, 2025

    • TRACERx-PHLEX

      Public
      Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
      Shell
      •
      MIT License
      •0•12•2•0•Updated Jan 6, 2025Jan 6, 2025

    • hts_neutralisation_launcher

      Public
      Automate neutralisation analyses
      Python
      •1•0•2•0•Updated Dec 18, 2024Dec 18, 2024

    • plaque_assay

      Public
      Analysis code for covid-19 serology neutralisation assay.
      Python
      •
      MIT License
      •1•0•6•0•Updated Dec 18, 2024Dec 18, 2024

    • sparks

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•6•0•0•Updated Dec 12, 2024Dec 12, 2024

    • nextflow-modules

      Public
      Contains managed modules and subworkflows for Nextflow that can be installed into pipelines
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated Nov 28, 2024Nov 28, 2024

    • CBIAS_napari_workshop_2024

      Public
      CBIAS napari workshop 2024 - run as part of the Crick Bioimage Analysis Symposium 2024
      Jupyter Notebook
      •1•2•0•0•Updated Nov 27, 2024Nov 27, 2024

    • cbias2024_napari_demo

      Public
      Demo plugin for CBIAS 2024 Napari workshop
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • chronogram

      Public
      cast and annotate metadata, laboratory & clinical data
      R
      •
      Other
      •0•1•0•0•Updated Nov 8, 2024Nov 8, 2024

    • MT_Force_Spindle

      Public
      Public codes for Chu et al.,
      Jupyter Notebook
      •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • introduction-to-image-analysis

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution Share Alike 4.0 International
      •3•2•0•0•Updated Oct 21, 2024Oct 21, 2024

    • AIoD-Model-Registry

      Public
      The core registry for all AI models available on AI on Demand
      Python
      •0•0•2•0•Updated Oct 15, 2024Oct 15, 2024

    • babs-data-challenge-rna-atac

      Public
      Recruitment ATAC & RNA-seq data challenge questions and material
      2•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • Making-Lab-Repositories

      Public
      0•2•0•0•Updated Oct 9, 2024Oct 9, 2024

    • Monitor-Blanking-V2

      Public
      Monitor blanking for msi displays
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • multi-dimensional-imaging-and-analysis

      Public
      Jupyter Notebook
      •1•4•0•0•Updated Sep 24, 2024Sep 24, 2024

    • sparks-ai

      Public template
      HTML
      •0•0•0•0•Updated Sep 19, 2024Sep 19, 2024

    • uniprot_annotation

      Public
      A script to collect residue annotations for a list of proteins using the UniProt ID mapping tool
      Python
      •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • TYPEx

      Public
      Deep cell phenoTYPE characterisation using multipleX imaging
      R
      •
      MIT License
      •0•0•1•0•Updated Sep 12, 2024Sep 12, 2024

    • 3D-printer-simulator

      Public
      3D printer simulator
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Aug 30, 2024Aug 30, 2024