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    112 repositories

    • phase1b

      Public
      R
      •
      Other
      •2•5•16•1•Updated Mar 6, 2025Mar 6, 2025

    • gReLU

      Public
      gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
      Python
      •
      MIT License
      •30•251•21•7•Updated Mar 6, 2025Mar 6, 2025

    • gReLU-applications

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

    • Islander

      Public
      Jupyter Notebook
      •
      MIT License
      •0•10•0•0•Updated Mar 6, 2025Mar 6, 2025

    • PerturbQA

      Public
      Python
      •
      Other
      •0•5•0•0•Updated Mar 4, 2025Mar 4, 2025

    • beignet

      Public
      A standard library for biological research.
      Python
      •
      MIT License
      •5•21•14•17•Updated Mar 2, 2025Mar 2, 2025

    • jmpost

      Public
      R
      •4•17•56•1•Updated Mar 1, 2025Mar 1, 2025

    • topological_PRM_for_lungHRCT

      Public
      Lung image analysis pipeline for topological PRM maps
      topological-data-analysislungcopdminkowski-functionalshrctparametric-response-mapping
      Python
      •
      Apache License 2.0
      •0•2•0•0•Updated Feb 27, 2025Feb 27, 2025

    • rd2markdown

      Public
      R
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      Other
      •0•7•5•0•Updated Feb 27, 2025Feb 27, 2025

    • psborrow2

      Public
      psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysis
      simulation-studybayesian-dynamic-borrowingpsborrow2r
      R
      •
      Other
      •2•18•6•2•Updated Feb 26, 2025Feb 26, 2025

    • SaludLibrary

      Public
      Python
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      Other
      •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • BayesERtools

      Public
      R
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      Other
      •1•2•2•0•Updated Feb 21, 2025Feb 21, 2025

    • genentech.r-universe.dev

      Public
      1•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • Teal4Real

      Public
      Teal4Real - use the Teal clinical trial reporting software with Real-world Data or any other one-row-per-patient dataset (not ADaM format)
      R
      •
      MIT License
      •0•3•0•0•Updated Feb 19, 2025Feb 19, 2025

    • psborrow

      Public
      An R package for Bayesian Dynamic Borrowing. Check out the successor psborrow2: https://github.com/Genentech/psborrow2
      HTML
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      Other
      •3•0•1•1•Updated Feb 19, 2025Feb 19, 2025

    • spex_ms_job_manager

      Public
      Python
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      Other
      •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

    • scimilarity

      Public
      A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
      Python
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      Other
      •4•176•18•0•Updated Feb 18, 2025Feb 18, 2025

    • BayesERbook

      Public
      R
      •
      Other
      •1•1•3•1•Updated Feb 17, 2025Feb 17, 2025

    • stats4phc

      Public
      Performance evaluation for the prognostic value of predictive models intended to support personalized healthcare through predictiveness curves and positive / negative predictive values.
      R
      •1•1•0•0•Updated Feb 17, 2025Feb 17, 2025

    • covtracer

      Public
      Tools for contextualizing tests, built using covr test traces.
      R
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      Other
      •4•21•7•0•Updated Feb 13, 2025Feb 13, 2025

    • checked

      Public
      batch R CMD check management
      rchecksrevdeps
      R
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      Other
      •1•7•11•1•Updated Feb 12, 2025Feb 12, 2025

    • spex_spatial_transcriptomics

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • spex_segmentation

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • spex_backend

      Public
      Python
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      Other
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • pysummaries

      Public
      Generate beautiful summary tables from pandas dataframes
      pythonpandas-dataframepandastablesclinical-researchsummary-statisticstableonetable1real-world-data-analysis
      Python
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      Other
      •1•24•0•0•Updated Jan 20, 2025Jan 20, 2025

    • Isosceles

      Public
      The Isoforms from Single-Cell; Long-read Expression Suite
      R
      •
      GNU General Public License v3.0
      •1•24•9•0•Updated Jan 14, 2025Jan 14, 2025

    • polygraph

      Public
      Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
      Jupyter Notebook
      •
      MIT License
      •0•28•1•0•Updated Jan 9, 2025Jan 9, 2025

    • SpatialQPFs

      Public
      R
      •0•3•0•0•Updated Jan 6, 2025Jan 6, 2025

    • pascient

      Public
      Jupyter Notebook
      •
      Other
      •2•11•0•0•Updated Dec 19, 2024Dec 19, 2024

    • decima-applications

      Public
      Jupyter Notebook
      •
      Other
      •1•7•0•0•Updated Dec 14, 2024Dec 14, 2024