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@ISA-tools ISA tools

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    95 repositories

    • isa-api

      Public
      ISA tools API
      life-sciences-imagedata-managementexperimental-metadatapythonisa
      Jupyter Notebook
      •
      Other
      •38•41•52•1•Updated Nov 5, 2024Nov 5, 2024

    • ptox-metadata-manager-client

      Public
      Vue
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•2•Updated Nov 1, 2024Nov 1, 2024

    • mzml2isa

      Public
      Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
      Python
      •
      GNU General Public License v3.0
      •6•12•13•2•Updated Sep 3, 2024Sep 3, 2024

    • stato

      Public
      This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:
      statisticsowlontologyobofoundry
      Java
      •8•31•0•0•Updated Jul 19, 2024Jul 19, 2024

    • stato-dashboard

      Public
      a obofoundry template based dashboard
      Shell
      •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • ISAdatasets

      Public
      Repository for ISA datasets, which may be available in different formats (tab, RDF, JSON)
      datasetsisa-jsonisa-tabisa-datasets
      11•7•2•0•Updated Jul 9, 2024Jul 9, 2024

    • isa-rwval

      Public
      Read/write/validation packages for the ISA tools API
      Python
      •
      Other
      •5•1•3•1•Updated Jun 29, 2024Jun 29, 2024

    • graph2tab

      Public
      graph2tab, a library to convert experimental workflow graphs into tabular formats
      Java
      •2•6•0•0•Updated Apr 30, 2024Apr 30, 2024

    • OntoMaton

      Public
      OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.
      olslovgoogle-spreadsheetontologyontology-searchontology-lookup-servicesbioportal
      JavaScript
      •9•41•11•6•Updated Jan 8, 2024Jan 8, 2024

    • nmrml2isa

      Public
      Generate ISA-Tab studies from .nmrML files
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Nov 6, 2023Nov 6, 2023

    • MSIO

      Public
      Metabolomics Standards Initiative Ontology
      data-sciencemetabolomicsmass-spectrometrydata-sharingnmr-spectroscopyfluxomics
      Java
      •2•5•1•1•Updated Jul 11, 2023Jul 11, 2023

    • ISAvalidator-ISAconverter-BIImanager

      Public
      The ISAvalidator, ISA converter and BII data manager tools
      Java
      •15•12•19•2•Updated Jul 7, 2023Jul 7, 2023

    • ISAcreator

      Public
      ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).
      data-managementexperimental-metadataisa-tab-datasetjavaisacreator
      Java
      •
      Other
      •26•40•48•2•Updated Mar 23, 2023Mar 23, 2023

    • isa-specs

      Public
      ISA Model and Serialization Specifications
      HTML
      •6•5•1•4•Updated Feb 28, 2023Feb 28, 2023

    • isa-contexts

      Public
      Python
      •0•0•1•0•Updated Feb 23, 2023Feb 23, 2023

    • ISA-tools.github.io

      Public
      ISA tools website
      HTML
      •0•0•2•1•Updated Feb 15, 2023Feb 15, 2023

    • isatools-notebooks

      Public
      Example Jupyter notebooks using the ISA-API
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•4•5•Updated Feb 10, 2023Feb 10, 2023

    • isa-configurations

      Public
      ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool
      9•5•5•0•Updated Jan 6, 2023Jan 6, 2023

    • mzml2isa-galaxy

      Public
      mzml2isa for galaxy
      5•6•0•0•Updated Dec 7, 2022Dec 7, 2022

    • BioSharingUtils

      Public
      A selection of tools to automatically update content in BioSharing.
      Java
      •0•1•0•1•Updated Jun 21, 2022Jun 21, 2022

    • psql2graphql

      Public
      A PSQL to GRAPHQL python API using flask
      Python
      •
      GNU General Public License v3.0
      •1•0•0•1•Updated May 12, 2022May 12, 2022

    • BioInvIndex

      Public
      The web application, model, database persistence, services package and web services for the BII. Led by Eamonn Maguire (Uni. of Oxford) & Philippe Rocca-Serra (Uni. of Oxford).
      Java
      •13•16•12•0•Updated Feb 28, 2022Feb 28, 2022

    • ISAconfigurator

      Public
      The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).
      Java
      •12•13•3•0•Updated Feb 28, 2022Feb 28, 2022

    • stato-app

      Public
      The web application for the STATO ontology
      Java
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Feb 14, 2022Feb 14, 2022

    • isa-create-test-notebooks

      Public
      A set of notebooks to create StudyDesigns
      Jupyter Notebook
      •1•0•0•0•Updated Aug 24, 2021Aug 24, 2021

    • isaLD

      Public
      A netlify endpoint to inject ISA LD into ISA JSON
      JavaScript
      •0•0•0•0•Updated Jun 23, 2021Jun 23, 2021

    • jUtils

      Public
      jUtils, a miscellanea of small and handy general purpose utilities for Java
      Java
      •6•6•0•5•Updated Jun 7, 2021Jun 7, 2021

    • ISAcommons.github.io

      Public
      ISA commons website
      JavaScript
      •2•0•0•0•Updated Apr 25, 2021Apr 25, 2021

    • isa-rest-service

      Public
      RESTful web service to use ISA API
      Python
      •
      Other
      •1•2•10•1•Updated Feb 16, 2021Feb 16, 2021

    • isa-cookbook

      Public
      ISA python API documentation
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •1•1•0•0•Updated Jan 30, 2021Jan 30, 2021