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    41 repositories

    • MixALime

      Public
      Python
      •1•8•0•0•Updated Feb 24, 2025Feb 24, 2025

    • ASB-frontend

      Public
      TypeScript
      •1•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • hocomoco_webapp

      Public
      Web-site for HOCOMOCO collection of transcription factor binding sites motifs.
      websitemotifstfbs
      Ruby
      •0•0•0•6•Updated Feb 20, 2025Feb 20, 2025

    • opera_webface

      Public
      Webface for OperaHouse (included inside)
      Ruby
      •
      MIT License
      •0•0•0•6•Updated Feb 17, 2025Feb 17, 2025

    • epifactors_webapp

      Public
      Web-site for EpiFactors database of epigenetic factors, corresponding genes and products.
      websiteepigenetics
      Ruby
      •1•0•0•2•Updated Jan 15, 2025Jan 15, 2025

    • ArmNet

      Public
      Python
      •
      MIT License
      •0•4•0•0•Updated Jan 11, 2025Jan 11, 2025

    • parade

      Public
      Jupyter Notebook
      •2•2•0•0•Updated Jan 9, 2025Jan 9, 2025

    • pasio

      Public
      Pasio is a tool for denoising profiles coming from DNA-sequencing data like ATAC-seq, DNA-seq or ChIP-seq.
      Python
      •
      Other
      •2•1•0•1•Updated Dec 30, 2024Dec 30, 2024

    • MEX-ArChIPelago

      Public
      This repository allows reproducing the MEX-ArChIPelago analysis
      Jupyter Notebook
      •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • ibis-challenge

      Public
      Repository with source code and metadata for IBIS challenge
      Python
      •1•1•0•0•Updated Nov 26, 2024Nov 26, 2024

    • NeMARA

      Public
      NeMARA
      Python
      •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

    • ASB-backend

      Public
      Python
      •1•0•0•8•Updated Nov 16, 2024Nov 16, 2024

    • BABACHI

      Public
      Python
      •
      Other
      •0•3•1•0•Updated Nov 16, 2024Nov 16, 2024

    • mixalime_simulation

      Public
      Reproduction material for numerical tests in a MixALime paper
      Python
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • LegNet

      Public
      accurate prediction of promoter activity and variant effects from massive parallel reporter assays
      Jupyter Notebook
      •
      MIT License
      •3•34•0•0•Updated Oct 24, 2024Oct 24, 2024

    • human_legnet

      Public
      Python
      •
      MIT License
      •1•8•0•0•Updated Oct 21, 2024Oct 21, 2024

    • kmer-motif-enrichment

      Public
      Python
      •1•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • hocomoco_v9

      Public
      Old version of HOCOMOCO TFBS motif database, version 9: https://autosome.ru/HOCOMOCO
      HTML
      •0•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • MoLoTool-2.0

      Public
      Sequence Motif Location Tool (MoLoTool)
      JavaScript
      •2•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • PBM_preprocessing

      Public
      Ruby
      •0•0•0•0•Updated Jun 22, 2024Jun 22, 2024

    • UDACHA_pipeline

      Public
      Python
      •0•0•0•0•Updated May 28, 2024May 28, 2024

    • sarus

      Public
      SPRY-SARUS motif scanner
      Java
      •0•2•1•0•Updated Feb 13, 2024Feb 13, 2024

    • vigg_ribonanza

      Public
      Source code of the Stanford Ribonanza RNA Folding first place solution
      Python
      •
      MIT License
      •1•22•0•0•Updated Dec 21, 2023Dec 21, 2023

    • sequence_logo

      Public
      SequenceLogo is a tool for drawing sequence logos of motifs
      Ruby
      •
      MIT License
      •1•1•0•1•Updated Oct 31, 2023Oct 31, 2023

    • hocomoco_rsnp_benchmarks

      Public
      Python
      •1•0•0•0•Updated Sep 27, 2023Sep 27, 2023

    • motif_benchmarks

      Public
      Benchmarks collection for GRECO TFBS Benchmarking Initiative
      chip-seqpwmpbmpssmbinding-sitesfrequency-matrixmotifspfmtfbsweight-matrix
      C
      •
      MIT License
      •0•3•0•0•Updated Aug 15, 2023Aug 15, 2023

    • draw_motif_logo

      Public
      Python3 scripts to draw motif logo in svg format
      Python
      •
      Other
      •1•0•0•0•Updated Mar 8, 2023Mar 8, 2023

    • ADASTRA-pipeline

      Public
      Python
      •1•3•2•0•Updated Jan 2, 2023Jan 2, 2023

    • dream2022

      Public
      DREAM 2022 -- autosome.org
      Python
      •0•0•0•0•Updated Aug 7, 2022Aug 7, 2022

    • macro-perfectos-ape

      Public
      MACRO-APE and PERFECTOS-APE tools
      Java
      •1•2•1•0•Updated Jul 20, 2022Jul 20, 2022