Repositories list

• AnVIL_Collection

  Public
  📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects

  websiteanvilcontent-library+ 2gdscnedtech-software

  R

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  Creative Commons Attribution 4.0 International

  •1•0•4•0•Updated Dec 22, 2024Dec 22, 2024

• AnVIL_Outreach_Dashboard

  Public
  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•4•0•Updated Dec 22, 2024Dec 22, 2024

• OTTR_Quarto

  Public template
  Repo for Quarto based Open-source Tools for Training Resources (OTTR)

  quartoquarto-template

  CSS

  •1•2•7•0•Updated Dec 20, 2024Dec 20, 2024

• OTTR_Quarto_Website

  Public template
  OTTR template for making a Quarto based website

  CSS

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  MIT License

  •0•0•1•0•Updated Dec 20, 2024Dec 20, 2024

• Ethical_Data_Handling_for_Cancer_Research

  Public
  This course is designed to help researchers and investigators understand the key principles of data management from an ethics, privacy, security, usability and discoverability perspective.

  securitydataprivacy+ 17researchriskhipaadata-sharingethicsphipii+ 10

  TeX

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  Creative Commons Attribution 4.0 International

  •0•1•13•2•Updated Dec 20, 2024Dec 20, 2024

• Tools_for_Reproducible_Workflows_in_R

  Public
  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•12•0•Updated Dec 20, 2024Dec 20, 2024

• Containers_for_Scientists

  Public
  A course to introduce Docker for research purposes

  dockercontainersitn-course+ 1future-course

  CSS

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  Creative Commons Attribution 4.0 International

  •1•1•0•0•Updated Dec 19, 2024Dec 19, 2024

• Intermediate_Python_quarto

  Public
  HTML

  •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• Clinical_Data_Analysis

  Public
  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•4•0•Updated Dec 18, 2024Dec 18, 2024

• Moffitt_ITN_Workshop

  Public
  CSS

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  MIT License

  •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• NIH_Data_Sharing

  Public
  Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy.

  data-storagepolicybudgeting+ 10data-managementdata-sharingnihgrant-proposalsgrant-submissionhutch-courseitn-course+ 3

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•6•1•Updated Dec 18, 2024Dec 18, 2024

• AI_for_Efficient_Programming

  Public
  This course on AI for software development explores the use of AI large language models (ChatGPT, Bard, etc) and their potential benefits and challenges. Hands-on activities show the ways in which AI can speed up software development tasks and free up time for more creative and strategic work, maximizing benefits/efficiency while limiting harm.

  coursechatbotartificial-intelligence+ 15ethicslearn-aillmllmssoftware-learninghutch-courseitn-course+ 8

  CSS

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  Creative Commons Attribution 4.0 International

  •1•3•11•3•Updated Dec 18, 2024Dec 18, 2024

• AnVIL_Poll_2024

  Public
  A summary of our findings from the 2024 State of the AnVIL user poll.

  HTML

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  MIT License

  •0•0•4•1•Updated Dec 17, 2024Dec 17, 2024

• Clinical_Data_Management

  Public
  CSS

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  MIT License

  •1•0•4•1•Updated Dec 17, 2024Dec 17, 2024

• Intermediate_Python

  Public
  CSS

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• Choosing_Genomics_Tools

  Public
  Based on their genomic data types and goals, this course will help learners find educational resources and tools to help them process and interpret data.

  data-processinggenomic-datadata-interpretation+ 4itn-courseaudience-researcherscategory-fundamentals-tools-resourcesresources-and-tools

  TeX

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  Creative Commons Attribution 4.0 International

  •6•7•27•2•Updated Dec 11, 2024Dec 11, 2024

• survey_ethics_curricula

  Public
  HTML

  •0•0•0•0•Updated Dec 7, 2024Dec 7, 2024

• DaSEH

  Public
  🌼 Collection of materials to accompany the R25 funded "Data Science for Environmental Health" short course

  data-sciencecoursetidyverse+ 8public-healthbeginnerbeginner-friendlyr-programmingniehsenvironmental-healthbeginner-programming+ 1

  HTML

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  MIT License

  •1•0•37•4•Updated Dec 6, 2024Dec 6, 2024

• github-actions-workshop

  Public template
  A sandbox of github actions to play with for the purposes of a workshop (or independent learning)

  HTML

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  Creative Commons Zero v1.0 Universal

  •1•2•1•0•Updated Dec 6, 2024Dec 6, 2024

• GitHub_Automation_for_Scientists

  Public
  This course walks through why's and the how's for using automation to boost scientific software development process.

  automationtemplatesactivities+ 5troubleshootinggithub-actionsitn-courseaudience-software-developerscategory-software-dev

  CSS

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  Creative Commons Attribution 4.0 International

  •1•1•5•2•Updated Dec 5, 2024Dec 5, 2024

• metricminer

  Public
  R package that digs up data that matters from APIs, making it dashboard-ready

  edtech-software

  R

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  MIT License

  •0•2•34•1•Updated Dec 4, 2024Dec 4, 2024

• Overleaf_and_LaTeX_for_Scientific_Articles

  Public
  This course is designed to help researchers and trainees write scientific articles using LaTeX and Overleaf.

  latextemplatestypesetting+ 9collaborationoverleafarxivscientific-publicationsgetting-helpitn-courseaudience-leaders+ 2

  CSS

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  Creative Commons Attribution 4.0 International

  •0•1•3•3•Updated Dec 3, 2024Dec 3, 2024

• test_bench_to_bytes

  Public
  Dummy repo created to help figure out https://github.com/fhdsl/bench_to_bytes/issues/7

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•4•0•Updated Dec 1, 2024Dec 1, 2024

• fhdsl_Training_Kit

  Public
  This resource is intended to provide guidance and assistance for creating online and in-person training materials.

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•4•0•Updated Dec 1, 2024Dec 1, 2024

• DataViz_Considerations

  Public
  ITN course "Considerations for Bioinformatic Data Visualization" focusing on considerations for best practices in data visualization

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•4•2•Updated Dec 1, 2024Dec 1, 2024

• Robust_Software_Development

  Public
  ITN course on robust software development and giving your code base a full set of features beyond the code itself

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•4•0•Updated Dec 1, 2024Dec 1, 2024

• DataViz_Practice

  Public
  ITN course "Cancer Informatics Data Visualization in Practice" focusing on practicing best practices in data visualization

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•4•2•Updated Dec 1, 2024Dec 1, 2024

• Intro_to_Python

  Public
  The course covers fundamentals of Python, a high-level programming language, and use it to wrangle data for analysis and visualization.

  hutch-course

  JavaScript

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  Creative Commons Attribution 4.0 International

  •0•0•1•0•Updated Dec 1, 2024Dec 1, 2024

• FH_Cluster_101

  Public
  This course introduces users to the Fred Hutch Cluster. It will lead users through account creation, using the terminal, connecting to the cluster, submitting jobs, and transferring files. Available in both web and Leanpub formats.

  coursecommand-linehpcc+ 2computing-clusterhutch-course

  JavaScript

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  Creative Commons Attribution 4.0 International

  •2•0•9•0•Updated Dec 1, 2024Dec 1, 2024

• bench_to_bytes

  Public
  A guide for wet bench researchers about why considering computational and data science skills can be useful for all types of scientific work.

  CSS

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  Creative Commons Attribution 4.0 International

  •0•0•5•5•Updated Dec 1, 2024Dec 1, 2024