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    125 repositories

    • ga4gh-testbed-api

      Public
      GA4GH-wide testbed infrastructure for hosting testbed reports
      Java
      •1•1•8•1•Updated Oct 22, 2024Oct 22, 2024

    • task-execution-schemas

      Public
      Apache License 2.0
      •28•81•45•10•Updated Oct 21, 2024Oct 21, 2024

    • va-spec

      Public
      An information model for representing variant annotations.
      Jupyter Notebook
      •
      Apache License 2.0
      •4•17•101•0•Updated Oct 17, 2024Oct 17, 2024

    • Get-Started-with-GA4GH-APIs

      Public
      ISMB 2022 tutorial on FASP and Starter Kit
      Jupyter Notebook
      •
      Apache License 2.0
      •1•5•5•1•Updated Oct 17, 2024Oct 17, 2024

    • ga4gh-bed

      Public archive
      The browser extensible data (BED) file format describes genomic intervals on chromosomes or scaffolds
      Apache License 2.0
      •2•0•1•2•Updated Oct 17, 2024Oct 17, 2024

    • vrs-python

      Public
      GA4GH Variation Representation Python Implementation
      bioinformaticsgenomicsga4gh
      Python
      •
      Apache License 2.0
      •27•51•36•0•Updated Oct 14, 2024Oct 14, 2024

    • gks-starter-repo

      Public
      A starting point to copy and use for teams wishing to quickly define their own schema extensions and profiles to the VA, Cat-VRS or VRS schemas.
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Oct 11, 2024Oct 11, 2024

    • tool-registry-service-schemas

      Public
      APIs for discovering genomics tools, their metadata and their containers
      apitoolworkflowwdlga4ghcwl
      Shell
      •
      Apache License 2.0
      •18•30•25•1•Updated Oct 11, 2024Oct 11, 2024

    • data-security

      Public
      This is the repository for the GA4GH Data Security Work Stream, containing AAI and DSIP.
      Python
      •16•22•1•5•Updated Oct 11, 2024Oct 11, 2024

    • cat-vrs

      Public
      A terminology and data model for describing categorical variation concepts.
      Makefile
      •
      Apache License 2.0
      •2•1•2•0•Updated Oct 11, 2024Oct 11, 2024

    • vrs

      Public
      Extensible specification for representing and uniquely identifying biological sequence variation
      bioinformaticsgenomicsvariation
      Jupyter Notebook
      •
      Apache License 2.0
      •32•80•21•3•Updated Oct 11, 2024Oct 11, 2024

    • gks-common

      Public
      Common classes and schemas used by all GKS specifications (ie. VR, VA, etc..)
      Makefile
      •
      Apache License 2.0
      •0•2•3•0•Updated Oct 11, 2024Oct 11, 2024

    • quality-control-wgs

      Public
      Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations
      Jupyter Notebook
      •
      Apache License 2.0
      •3•14•3•1•Updated Oct 10, 2024Oct 10, 2024

    • ga4gh-starter-kit-drs

      Public
      Open, extensible server implementation of the GA4GH Data Repository Service (DRS) specification
      starter-kit
      Java
      •
      Apache License 2.0
      •7•4•9•1•Updated Oct 9, 2024Oct 9, 2024

    • gks-ashg-2024-unconference

      Public
      MIT License
      •0•0•4•0•Updated Oct 4, 2024Oct 4, 2024

    • refget

      Public
      GA4GH Refget specifications docs
      collectiondigestfastasequence
      HTML
      •7•14•26•2•Updated Oct 2, 2024Oct 2, 2024

    • ga4gh-testbed-lib

      Public
      Python library for creating GA4GH testbed reports according to a harmonized, cross-workstream schema
      testbed
      Python
      •
      Apache License 2.0
      •1•1•2•1•Updated Sep 30, 2024Sep 30, 2024

    • workflow-execution-service-schemas

      Public
      The WES API is a standard way to run and manage portable workflows.
      workflowwdlga4ghcwl
      Apache License 2.0
      •38•82•51•5•Updated Sep 28, 2024Sep 28, 2024

    • pedigree_family_history_terminology

      Public
      Java
      •
      Apache License 2.0
      •6•5•10•0•Updated Sep 17, 2024Sep 17, 2024

    • data-repository-service-schemas

      Public
      A repository for the schemas used for the Data Repository Service.
      Apache License 2.0
      •53•60•64•22•Updated Sep 12, 2024Sep 12, 2024

    • TASC

      Public
      TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.
      interoperabilityharmonisationtechnical-alignment
      7•8•18•2•Updated Sep 11, 2024Sep 11, 2024

    • ga4gh-testbed-ui

      Public
      Web UI for the GA4GH Testbed Reporting service
      testbed
      JavaScript
      •
      Apache License 2.0
      •1•2•0•2•Updated Sep 10, 2024Sep 10, 2024

    • gks-metaschema

      Public
      Tools and scripts for parsing the GKS standards metaschemas
      Python
      •
      Apache License 2.0
      •2•0•4•1•Updated Sep 9, 2024Sep 9, 2024

    • gks2clinvar

      Public
      A submission tool for submitting to the ClinVar Submission API using GA4GH GKS data
      Apache License 2.0
      •0•0•9•4•Updated Sep 4, 2024Sep 4, 2024

    • va-spec-python

      Public
      GA4GH Variation Annotation Python Implementation
      Makefile
      •
      Apache License 2.0
      •1•0•1•1•Updated Sep 3, 2024Sep 3, 2024

    • cat-vrs-python

      Public
      GA4GH Categorical Variation Representation Python Implementation
      Makefile
      •
      Apache License 2.0
      •1•0•1•2•Updated Sep 3, 2024Sep 3, 2024

    • pedigree-tools

      Public
      JavaScript
      •1•1•4•9•Updated Aug 21, 2024Aug 21, 2024

    • gk-pilot

      Public
      A pilot implementation of GKS Work Stream specifications.
      Makefile
      •
      Apache License 2.0
      •1•1•11•1•Updated Aug 15, 2024Aug 15, 2024

    • refget-compliance-suite

      Public
      Repository for the Google Summer of Code for the Reference Retrieval API
      ga4ghgsoc-2018retrieval-api
      Python
      •
      Apache License 2.0
      •6•7•3•3•Updated Aug 9, 2024Aug 9, 2024

    • ga4gh-doi

      Public
      Apache License 2.0
      •0•0•0•1•Updated Jul 31, 2024Jul 31, 2024