Jordan Lab

All

13 repositories

stringMLST_datasets
Public
stringMLST datasets
bioinformatics mlst bioinformatics-databases applied-bioinformatics-lab
MIT License
•0•5•1•0•Updated Mar 18, 2023Mar 18, 2023
tagore
Public
The script presents a simple way to visualize features on human chromosome ideograms
visualization bioinformatics ideogram human-genetics applied-bioinformatics-lab chromosome
Python
•
GNU General Public License v3.0
•9•39•3•0•Updated Dec 23, 2022Dec 23, 2022
STing_datasets
Public
MLST and other databases for STing
Python
•
MIT License
•0•1•0•0•Updated Sep 17, 2022Sep 17, 2022
pfgeBLAST
Public
PFGE from raw reads
Python
•0•0•0•0•Updated Jul 18, 2021Jul 18, 2021
ChocoGen-TraitMap
Public
HTML
•1•0•0•6•Updated May 11, 2021May 11, 2021
STing
Public
Ultrafast sequence typing and gene detection from NGS raw reads
genomics cpp ngs computational-biology dna mlst kmer ngs-analysis cgmlst databases
C++
•
Other
•2•20•4•0•Updated Apr 15, 2021Apr 15, 2021
stringMLST
Public
Fast k-mer based tool for multi locus sequence typing (MLST)
python bioinformatics kmer bacterial-database bacterial-genomes applied-bioinformatics-lab mlst fastq-files
Python
•
Other
•7•42•4•0•Updated Sep 3, 2020Sep 3, 2020
ChocoGen3-Chandeetal-2020
Public
Scripts for Chande et al. 2020. The phenotypic and functional consequences of genomic divergence between admixed Latin American populations: Antioquia and Chocó, Colombia
R
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 14, 2020Jan 14, 2020
pChunk
Public
Rapid, accurate annotations of Plasmids from Illumina NGS reads
bioinformatics annotation plasmid applied-bioinformatics-lab
R
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Other
•0•1•0•0•Updated Sep 30, 2019Sep 30, 2019
nifH_extract
Public
nifH_extract is a pipeline that retrieves a preliminary database of sequences from using an existing database of nifH genes.
Python
•1•0•4•0•Updated Aug 29, 2019Aug 29, 2019
vibriocholera.com
Public
Clarion
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MIT License
•0•0•0•0•Updated Jul 9, 2019Jul 9, 2019
GADGET_compute
Public
Source code for the GADGET compute module: https://gadget.biosci.gatech.edu/compute/
population-genetics genetic-analysis applied-bioinformatics-lab
CSS
•
GNU General Public License v3.0
•0•0•0•0•Updated Aug 6, 2018Aug 6, 2018
GADGET_explore
Public
Source code for the GADGET explore module: https://gadget.biosci.gatech.edu/explore/
visualization genetic-algorithm population-genetics applied-bioinformatics-lab
R
•
GNU General Public License v3.0
•1•2•0•0•Updated Aug 6, 2018Aug 6, 2018