SolisLemus lab projects

All

42 repositories

CMiNet
Public
CMiNet is an R package designed to generate consensus microbiome networks by integrating results from multiple network construction algorithms
r-package microbiome-data microbiome-network learning-consensus-microbiome-network
R
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GNU General Public License v3.0
•1•0•0•0•Updated Nov 13, 2024Nov 13, 2024
CMIMN
Public
CMIMN: Conditional Mutual Information for constructing Microbiome Network
r-package conditional-mutual-information microbiome-data microbiome-network
R
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GNU General Public License v3.0
•1•0•0•0•Updated Nov 9, 2024Nov 9, 2024
lab-dynamics
Public
Useful documents on guidelines, advice, resources for the lab
6•9•0•0•Updated Nov 7, 2024Nov 7, 2024
solislemuslab.github.io
Public
Github repo for SolisLemus lab website
open-source statistics reproducibility inclusion
TeX
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Other
•33•1•0•0•Updated Nov 7, 2024Nov 7, 2024
lake-microbiome-data-analysis
Public
Python
•1•1•0•0•Updated Nov 7, 2024Nov 7, 2024
HighDimMixedModels.jl
Public
Julia package for fitting regularized linear mixed-effect models on high-dimensional omics data.
high-dimensional-data omics mixed-effects-models
Julia
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GNU General Public License v3.0
•1•3•1•0•Updated Nov 4, 2024Nov 4, 2024
el-zoominario
Public
El Zoominario: seminar series to increase visibility of Latinx in STEM
stem teaching-materials latinx
CSS
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MIT License
•1•0•0•0•Updated Oct 25, 2024Oct 25, 2024
PhyloClustering.jl
Public
Julia
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MIT License
•1•2•3•0•Updated Oct 25, 2024Oct 25, 2024
soil-microbiome-nn
Public
Random Forest and Bayesian Neural network model applied to soil microbiome data
microbiome machine-learning neural-network
Jupyter Notebook
•1•0•0•0•Updated Oct 12, 2024Oct 12, 2024
minaa
Public
MiNAA aligns a pair of networks based their topologies and biologies.
graal microbiome orca graphlets network-alignment graph-algorithm interaction-network
C++
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MIT License
•5•4•0•0•Updated Oct 8, 2024Oct 8, 2024
PhyloDiamond.jl
Public
Method to estimate phylogenetic networks from algebraic invariants
HTML
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MIT License
•2•6•3•0•Updated Oct 3, 2024Oct 3, 2024
latinx-uwmadison
Public
stem latinx
Ruby
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Other
•0•0•0•0•Updated Sep 30, 2024Sep 30, 2024
BayesianNetworkRegression.jl
Public
Julia
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GNU General Public License v2.0
•1•10•2•0•Updated Aug 13, 2024Aug 13, 2024
dummy-repo
Public
Dummy repo to practice git/github in the lab
3•0•0•0•Updated Aug 3, 2024Aug 3, 2024
phylo-webapp
Public
Julia
•1•0•0•0•Updated Jul 30, 2024Jul 30, 2024
bioklustering
Public
BioKlustering: a web app for semi-supervised learning of maximally unbalanced genomic data
machine-learning genomics clustering genomics-visualization
Jupyter Notebook
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MIT License
•3•2•1•0•Updated Jul 10, 2024Jul 10, 2024
viral-ancestral
Public
3•0•0•0•Updated May 13, 2024May 13, 2024
potato-seed-cert
Public
Data analysis and visualization for the WI potato seed certification database
Python
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GNU General Public License v3.0
•2•1•3•0•Updated May 3, 2024May 3, 2024
virus-linker
Public
Data visualization of virus linker
R
•0•0•0•0•Updated Apr 19, 2024Apr 19, 2024
CAR-LASSO
Public
Conditional Auto-Regressive LASSO
C++
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GNU General Public License v3.0
•5•0•0•0•Updated Apr 11, 2024Apr 11, 2024
data-art-exhibition
Public
Materials for the website for the Data as Art Exhibition series.
art data-science
MIT License
•0•0•0•0•Updated Mar 7, 2024Mar 7, 2024
learning-data-science
Public
Learning materials for Data Science within biological applications such as WI Fast Plants: https://fastplants.org/
R
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MIT License
•2•2•0•0•Updated Dec 22, 2023Dec 22, 2023
snaq-tutorial
Public
Tutorial to infer phylogenetic networks from multilocus data with SNaQ in PhyloNetworks
workshop phylogenetics networks
Julia
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MIT License
•0•4•0•0•Updated Nov 16, 2023Nov 16, 2023
tropical-stethoscope
Public
Classification of animal sounds in a hyperdiverse rainforest using Convolutional Neural Networks (Sun et al, 2021)
Jupyter Notebook
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MIT License
•4•12•1•0•Updated Oct 16, 2023Oct 16, 2023
latinx-stat-database
Public
JavaScript
•1•0•0•0•Updated Sep 15, 2023Sep 15, 2023
forensic-stat-database
Public
JavaScript
•0•0•0•0•Updated Sep 15, 2023Sep 15, 2023
bryophytes-introgression
Public
Collaboration with Juan Carlos Villareal Aguilar, Gordon Burleigh
Julia
•1•0•0•0•Updated Aug 7, 2023Aug 7, 2023
dna-nn-simulations
Public
Python
•0•0•0•0•Updated Jun 29, 2023Jun 29, 2023
minaa-webapp
Public
The MiNAA Web App is a wrapper around MiNAA built with R Shiny.
R
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MIT License
•1•0•0•0•Updated Jun 19, 2023Jun 19, 2023
sample-size-shinyapp
Public
R Shinyapp to calculate sample size for a given power
statistics hypothesis-testing power-analysis sample-size-calculation shiny
R
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MIT License
•0•0•1•0•Updated Jan 17, 2023Jan 17, 2023