environment.yml

# to create the environment
# >>> conda env create --file environment.yml
# to register the kernel for jupyter lab:
# >>> source activate myenv
# >>> python -m ipykernel install --user --name modular_cultures --display-name "modular_cultures"

name: modular_cultures
channels:
  - conda-forge
dependencies:
  - python=3.7
  # - anaconda
  - dask
  - dask-jobqueue
  - tqdm
  - enlighten
  - numpy=1.22.2
  - scipy=1.8.0
  - h5py=3.5.1
  - pandas=1.4.2
  - xarray=0.21.1
  - pytables=3.7.0
  - matplotlib=3.5.1
  - seaborn=0.11.2 # my violin-swarm plot hack does not work on version 0.12
  - palettable
  - networkx=3.1
  - brian2=2.5.0.3
  - cython=0.29.27
  - numba=0.53.1
  - ipywidgets
  - ipython
  - jupyter
  - jupyterlab
  - pymc=4.1.3
  - arviz=0.12.1
  - pip
  - pip:
    - ipy_dict_hierarchy=0.0.2
    - python-benedict=0.25.2
    - git+https://github.com/pSpitzner/bitsandbobs=0.0.1