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Should we start the haplotype counting at 0 or at 1? #3

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subwaystation opened this issue Sep 19, 2023 · 0 comments
Open

Should we start the haplotype counting at 0 or at 1? #3

subwaystation opened this issue Sep 19, 2023 · 0 comments

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@subwaystation
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In the HPRC we start at 1, if I remember correctly. The https://github.com/pangenome/pggb/blob/master/scripts/gfa2evaluation.sh script also assumes that we start counting at 1.
I am totally fine with it, but maybe this should be specified in the spec? I ran into issues with the script, because I had data that started at 0.
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@subwaystation