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asaim.yaml.lock
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asaim.yaml.lock
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install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: sra_tools
owner: iuc
revisions:
- 1790dcf3c32d
- 1ec814014652
- 494b2ec08162
- 4df8de2d0e48
- 516a54ddf218
- 653e89d73fc4
- 6591f049cf7e
- 69ebb7f46e45
- 6ea73833cf67
- 7068f48d0ef9
- 734abc7ac21d
- 751a694ec620
- 83c7d564b128
- aad3885b3216
- b723c120161a
- ba931a59dd59
- c441583adae5
- de0f7e0a3896
- e08a7ad4378b
- e407b9da183a
- f5ea3ce9b9b0
- f8054ea1c365
- fb723c531be5
tool_panel_section_label: Get Data
- name: fastqc
owner: devteam
revisions:
- 0b201de108b9
- 28d39af2dd06
- 3a458e268066
- 3fdc1a74d866
- 484e86282f4b
- 9337dd1fbc66
- d2cf2c0c8a11
- e28c965eeed4
tool_panel_section_label: FASTA/FASTQ
- name: prinseq
owner: iuc
revisions:
- 02befcb391f5
- 1ee282794de3
- 654b3a274ed5
- 6b865dde1baa
tool_panel_section_label: FASTA/FASTQ
- name: trim_galore
owner: bgruening
revisions:
- 11962ce40855
- 1bf4789584dc
- 2c1f0fe810f7
- 8352713cf939
- 949f01671246
- eb546ac2aab2
- f1e71aeaa923
tool_panel_section_label: FASTA/FASTQ
- name: trimmomatic
owner: pjbriggs
revisions:
- 14d05f2d511d
- 2bd7cdbb6228
- 415a165d92bb
- a60283899c6d
- f8a9a5eaca8a
tool_panel_section_label: FASTA/FASTQ
- name: multiqc
owner: iuc
revisions:
- 161f4383df15
- 1c2db0054039
- 3d93dd18d9f8
- 5e33b465d8d5
- 75c93c70d094
- 9a913cdee30e
- abfd8a6544d7
- b2f1f75d49c4
- bf675f34b056
- c19b16e5729c
- e4574a4d09d8
- f7985e0479b9
tool_panel_section_label: Quality Control
- name: format_cd_hit_output
owner: bebatut
revisions:
- 4015e9d6d277
tool_panel_section_label: Multiple Alignments
- name: sortmerna
owner: rnateam
revisions:
- 185effcdfb68
- 59252ca85c74
- 65c38d020fea
- b482293b2987
tool_panel_section_label: Annotation
- name: data_manager_sortmerna_database_downloader
owner: rnateam
revisions:
- 30bb49887172
tool_panel_section_label: Data Managers
- name: ncbi_blast_plus
owner: devteam
revisions:
- 2fe07f50a41e
- 3034ce97dd33
- 393a7a35383c
- 577d9c12411a
- 623f727cdff1
- 6560192c5098
- 6f386c5dc4fb
- 70e7dcbf6573
- 7538e2bfcd41
- 7f3c448e119b
- 9dabbfd73c8a
- b5f1f599d1fb
tool_panel_section_label: NCBI Blast
- name: diamond
owner: bgruening
revisions:
- 3c6b132b154a
- 54f751e413f4
- 98037ef3d2a9
tool_panel_section_label: NCBI Blast
- name: bwa
owner: devteam
revisions:
- 48f306c57611
tool_panel_section_label: Mapping
- name: bowtie2
owner: devteam
revisions:
- 019c2a81547a
- 42bb952b4e3c
- 8ccbdbe9a695
- 96d2e31a3938
- a9d4f71dbfb0
- c1ec08cb34f9
- ceb6467e276c
tool_panel_section_label: Mapping
- name: hmmer3
owner: iuc
revisions:
- 54b6b4d0613a
- b5066aa77fea
tool_panel_section_label: Annotation
- name: vsearch
owner: iuc
revisions:
- 9495df9dd6ef
- b3c7199d8786
- fae6527990af
tool_panel_section_label: Metagenomic Analysis
- name: nonpareil
owner: iuc
revisions:
- 280386b252a5
- 45210df786b9
- cef64c36c89e
tool_panel_section_label: Metagenomic Analysis
- name: megahit
owner: iuc
revisions:
- 02a822e32de7
- 14ddfc8ffb93
- 7518ee87b53d
- 98242353faa4
- a96f3ad4e0d8
- de387b2b2803
tool_panel_section_label: Assembly
- name: metaspades
owner: nml
revisions:
- 01a241476407
tool_panel_section_label: Assembly
- name: quast
owner: iuc
revisions:
- 3061c8b029e5
- 342a1d1fed7b
- 59db8ea8c845
- 675488238c96
- 72472698a2df
- 736d51130b41
- 7594365c546b
- 81df4950d65b
- 875d0f36d66f
- ebb0dcdb621a
- f30d03867854
tool_panel_section_label: Assembly
- name: refseq_masher
owner: nml
revisions:
- 1ec42f033bb4
tool_panel_section_label: Assembly
- name: valet
owner: iuc
revisions:
- 56236acaad45
tool_panel_section_label: Metagenomic Analysis
- name: data_manager_qiime_database_downloader
owner: iuc
revisions:
- c4dba88e85ef
- cbe065fbd038
- cc18f0f3514c
- ed86a8f378c8
tool_panel_section_label: Data Managers
- name: format_metaphlan2_output
owner: bebatut
revisions:
- 2bfa9b200600
tool_panel_section_label: Metagenomic Analysis
- name: group_humann2_uniref_abundances_to_go
owner: bebatut
revisions:
- cad28d7b49d2
tool_panel_section_label: Metagenomic Analysis
- name: compare_humann2_output
owner: bebatut
revisions:
- c1aca37cb1fc
tool_panel_section_label: Metagenomic Analysis
- name: interproscan5
owner: bgruening
revisions:
- 82547f0d3a29
tool_panel_section_label: Annotation
- name: combine_metaphlan2_humann2
owner: bebatut
revisions:
- 31394a0c0242
tool_panel_section_label: Metagenomic Analysis
- name: export2graphlan
owner: iuc
revisions:
- 635c90a27692
- b16989c1e3a7
- ed1becc01910
tool_panel_section_label: Graph/Display Data
- name: taxonomy_krona_chart
owner: crs4
revisions:
- e9005d1f3cfd
tool_panel_section_label: Metagenomic Analysis
- name: kleborate
owner: iuc
revisions:
- 374b2e9ade86
- '383036561810'
- 959920e3e800
- a7c43271312c
tool_panel_section_label: Metagenomic Analysis