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<p class=MsoNormal><span style='font-size:18.0pt;line-height:105%'>Machine
Learning Assignment John Hopkins University</span></p>
<p class=MsoNormal>The code that supports this assignment is in the same repo
called <span class=SpellE>Prediction.R</span>.<span style='mso-spacerun:yes'>
</span>Here is the link to the repo:</p>
<p class=MsoNormal><a
href="https://github.com/pcolmer99/Machine-Learning-Assignment.git">https://github.com/pcolmer99/Machine-Learning-Assignment.git</a></p>
<p class=MsoNormal>The aim of the code is to predict the outcome of the
variable <span class=SpellE>classe</span>.</p>
<p class=MsoNormal>I spend some time reading the assignment, the actual
research paper and then performed some very simple analysis, i.e. feature
plots, box plots and viewing in Excel, to get a feel for the data. </p>
<p class=MsoNormal>This helped me devise the following process. Ive not
included all the analysis and truncated the screenshots in order to meet the
sub 2000 word limit.</p>
<p class=MsoNormal>Firstly we install the packages and load in all the relevant
libraries:</p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:blue'>> <span class=GramE>library(</span>caret)</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:blue'>> <span class=GramE>library(</span>ggplot2)</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:blue'>> <span class=SpellE><span
class=GramE>install.packages</span></span><span class=GramE>(</span>"caret")</span></p>
<p class=MsoNormal> </p>
<p class=MsoNormal>Then load in the training and testing sets, and ensure all
div by zero, NA and null values are converted to NA values in the data.
This is the start of the data <span class=SpellE>cleanup</span> process and
means we only have to deal with the NAs in our next step.</p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:blue'>> <span class=GramE>training</span>
<- read.csv('pml-training.csv', <span class=SpellE>na.strings</span>=c("NA","#DIV/0!",""))</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:blue'>> testing <- <span class=GramE>read.csv(</span>'pml-testing.csv',
<span class=SpellE>na.strings</span>=c("NA","#DIV/0!",""))</span></p>
<p class=MsoNormal> </p>
<p class=MsoNormal>As you can see, we now have lots of NAs to deal with.
This screenshot is truncated for brevity.</p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:blue'>> <span class=SpellE><span
class=GramE>str</span></span><span class=GramE>(</span>training)</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'>'<span class=SpellE>data.frame</span>':
19622 obs. of<span class=GramE> 160</span> variables:</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $
X
: <span class=SpellE>int</span><span class=GramE> 1</span> 2 3 4 5 6 7 8
9 10 ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>user_name</span>
: Factor w/ 6 levels "<span class=SpellE>adelmo</span>","<span
class=SpellE>carlitos</span><span class=GramE>",..:</span> 2 2 2 2 2 2 2 2
2 2 ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $
raw_timestamp_part_1 : <span class=SpellE>int</span><span
class=GramE> 1323084231</span> 1323084231 1323084231 1323084232
1323084232 1323084232 1323084232 1323084232 1323084232 1323084232 ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $
raw_timestamp_part_2 : <span class=SpellE>int</span><span
class=GramE> 788290</span> 808298 820366 120339 196328 304277 368296
440390 484323 484434 ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>cvtd_timestamp</span>
: Factor w/ 20 levels "02/12/2011 13:32<span class=GramE>",..:</span>
9 9 9 9 9 9 9 9 9 9 ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>new_window</span>
: Factor w/ 2 levels "<span class=SpellE>no","yes</span>":
1 1 1 1 1 1 1 1 1 <span class=GramE>1 ...</span></span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>num_window</span>
: <span class=SpellE>int</span><span class=GramE> 11</span> 11 11 12 12
12 12 12 12 12 ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>roll_belt</span>
: <span class=SpellE>num</span><span class=GramE> 1.41</span> 1.41 1.42
1.48 1.48 1.45 1.42 1.42 1.43 1.45 ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>pitch_belt</span>
: <span class=SpellE>num</span><span class=GramE> 8.07</span> 8.07 8.07
8.05 8.07 8.06 8.09 8.13 8.16 8.17 ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>yaw_belt</span>
: <span class=SpellE>num</span><span class=GramE> -</span>94.4 -94.4
-94.4 -94.4 -94.4 -94.4 -94.4 -94.4 -94.4 -94.4 ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>total_accel_belt</span>
: <span class=SpellE>int</span><span class=GramE> 3</span> 3 3 3 3 3 3 3
3 3 ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>kurtosis_roll_belt</span>
: <span class=SpellE>num</span><span class=GramE> NA</span> <span
class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>kurtosis_picth_belt</span>
: <span class=SpellE>num</span><span class=GramE> NA</span> <span
class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>kurtosis_yaw_belt</span>
: <span class=SpellE>logi</span><span class=GramE> NA</span> <span
class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>skewness_roll_belt</span>
: <span class=SpellE>num</span><span class=GramE> NA</span> <span
class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $
skewness_roll_belt.1 : <span class=SpellE>num</span><span
class=GramE> NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>skewness_yaw_belt</span>
: <span class=SpellE>logi</span><span class=GramE> NA</span> <span
class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> ...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>max_roll_belt</span>
: <span class=SpellE>num</span><span class=GramE> NA</span> <span
class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
<span class=SpellE>NA</span> <span class=SpellE>NA</span> <span class=SpellE>NA</span>
...</span></p>
<p class=MsoNormal style='margin-bottom:0cm;margin-bottom:.0001pt;background:
white;word-break:break-all'><span style='font-size:10.0pt;line-height:105%;
font-family:"Lucida Console";color:black'> $ <span class=SpellE>max_picth_belt</span>
: <span class=SpellE>int</span><span class=GramE> NA</span> <span