esummary_assembly.dtd

<!-- DocSum DTD for assembly database -->

<!--~~ !dtd
~~json
   <json type='esummary' version='0.3'>
       <config lcnames='true'/>
   </json>
~~-->

<!ENTITY	 % T_string		"(#PCDATA)">
<!ENTITY	 % T_int		"(#PCDATA)">

<!-- Members definition of Structure type: T_Bioproj -->
<!ELEMENT	BioprojectAccn		%T_string;>
<!--~~ <BioprojectId>
~~json <number/>
~~-->
<!ELEMENT	BioprojectId		%T_int;>

<!-- Definition of Structure type: T_Bioproj -->
<!--~~ <Bioproj>
~~json <object/>
~~-->
<!ENTITY	 % T_Bioproj "(
			BioprojectAccn?,
			BioprojectId?
			)
			">

<!-- Definition of List type: T_BioProjList -->
<!ELEMENT	Bioproj	%T_Bioproj;>
<!ENTITY	 % T_BioProjList	"(Bioproj)*">

<!-- Definition of List type: T_IntList -->
<!ELEMENT	int	%T_int;>
<!ENTITY	 % T_IntList	"(int)*">

<!-- Members definition of Structure type: T_Infraspecie -->
<!ELEMENT	Sub_type		%T_string;>
<!ELEMENT	Sub_value		%T_string;>

<!-- Definition of Structure type: T_Infraspecie -->
<!--~~ <Infraspecie>
~~json <object/>
~~-->
<!ENTITY	 % T_Infraspecie "(
			Sub_type?,
			Sub_value?
			)
			">

<!-- Definition of List type: T_InfraspeciesList -->
<!ELEMENT	Infraspecie	%T_Infraspecie;>
<!ENTITY	 % T_InfraspeciesList	"(Infraspecie)*">

<!-- Members definition of Structure type: T_BiosourceStruct -->
<!ELEMENT	InfraspeciesList		%T_InfraspeciesList;>
<!ELEMENT	Sex		%T_string;>
<!ELEMENT	Isolate		%T_string;>

<!-- Definition of Structure type: T_BiosourceStruct -->
<!--~~ <BiosourceStruct>
~~json <object/>
~~-->
<!ENTITY	 % T_BiosourceStruct "(
			InfraspeciesList?,
			Sex?,
			Isolate?
			)
			">
<!ENTITY	 % T_date		"(#PCDATA)">

<!-- Members definition of Structure type: T_Anomalous -->
<!ELEMENT	Property		%T_string;>
<!ELEMENT	Pubmed		%T_string;>

<!-- Definition of Structure type: T_Anomalous -->
<!--~~ <Anomalous>
~~json <object/>
~~-->
<!ENTITY	 % T_Anomalous "(
			Property?,
			Pubmed?
			)
			">

<!-- Definition of List type: T_AnomalousListT -->
<!ELEMENT	Anomalous	%T_Anomalous;>
<!ENTITY	 % T_AnomalousListT	"(Anomalous)*">

<!-- Definition of List type: T_StrList -->
<!ELEMENT	string	%T_string;>
<!ENTITY	 % T_StrList	"(string)*">

<!-- Members definition of Structure type: T_SynStruct -->
<!ELEMENT	Genbank		%T_string;>
<!ELEMENT	RefSeq		%T_string;>
<!ELEMENT	Similarity		%T_string;>

<!-- Definition of Structure type: T_SynStruct -->
<!--~~ <SynStruct>
~~json <object/>
~~-->
<!ENTITY	 % T_SynStruct "(
			Genbank?,
			RefSeq?,
			Similarity?
			)
			">

<!-- Members definition of Structure type: T_BuscoT -->
<!ELEMENT	RefSeqAnnotationRelease		%T_string;>
<!ELEMENT	BuscoLineage		%T_string;>
<!ELEMENT	BuscoVer		%T_string;>
<!ELEMENT	Complete		%T_string;>
<!ELEMENT	SingleCopy		%T_string;>
<!ELEMENT	Duplicated		%T_string;>
<!ELEMENT	Fragmented		%T_string;>
<!ELEMENT	Missing		%T_string;>
<!--~~ <TotalCount>
~~json <number/>
~~-->
<!ELEMENT	TotalCount		%T_int;>

<!-- Definition of Structure type: T_BuscoT -->
<!--~~ <BuscoT>
~~json <object/>
~~-->
<!ENTITY	 % T_BuscoT "(
			RefSeqAnnotationRelease?,
			BuscoLineage?,
			BuscoVer?,
			Complete?,
			SingleCopy?,
			Duplicated?,
			Fragmented?,
			Missing?,
			TotalCount?
			)
			">
<!ENTITY	 % T_xml		"(#PCDATA)">

<!-- Members definition of Structure type: T_DocSum -->
<!ELEMENT	RsUid		%T_string;>
<!ELEMENT	GbUid		%T_string;>
<!ELEMENT	AssemblyAccession		%T_string;>
<!ELEMENT	LastMajorReleaseAccession		%T_string;>
<!ELEMENT	LatestAccession		%T_string;>
<!ELEMENT	ChainId		%T_string;>
<!ELEMENT	AssemblyName		%T_string;>
<!ELEMENT	UCSCName		%T_string;>
<!ELEMENT	EnsemblName		%T_string;>
<!ELEMENT	Taxid		%T_string;>
<!ELEMENT	Organism		%T_string;>
<!ELEMENT	SpeciesTaxid		%T_string;>
<!ELEMENT	SpeciesName		%T_string;>
<!ELEMENT	AssemblyType		%T_string;>
<!ELEMENT	AssemblyClass		%T_string;>
<!ELEMENT	AssemblyStatus		%T_string;>
<!--~~ <AssemblyStatusSort>
~~json <number/>
~~-->
<!ELEMENT	AssemblyStatusSort		%T_int;>
<!ELEMENT	WGS		%T_string;>
<!ELEMENT	GB_BioProjects		%T_BioProjList;>
<!ELEMENT	GB_Projects		%T_IntList;>
<!ELEMENT	RS_BioProjects		%T_BioProjList;>
<!ELEMENT	RS_Projects		%T_IntList;>
<!ELEMENT	BioSampleAccn		%T_string;>
<!ELEMENT	BioSampleId		%T_string;>
<!ELEMENT	Biosource		%T_BiosourceStruct;>
<!ELEMENT	Coverage		%T_string;>
<!ELEMENT	PartialGenomeRepresentation		%T_string;>
<!ELEMENT	Primary		%T_string;>
<!ELEMENT	AssemblyDescription		%T_string;>
<!ELEMENT	ReleaseLevel		%T_string;>
<!ELEMENT	ReleaseType		%T_string;>
<!ELEMENT	AsmReleaseDate_GenBank		%T_date;>
<!ELEMENT	AsmReleaseDate_RefSeq		%T_date;>
<!ELEMENT	SeqReleaseDate		%T_date;>
<!ELEMENT	AsmUpdateDate		%T_date;>
<!ELEMENT	SubmissionDate		%T_date;>
<!ELEMENT	LastUpdateDate		%T_date;>
<!ELEMENT	SubmitterOrganization		%T_string;>
<!ELEMENT	RefSeq_category		%T_string;>
<!ELEMENT	AnomalousList		%T_AnomalousListT;>
<!ELEMENT	ExclFromRefSeq		%T_StrList;>
<!ELEMENT	PropertyList		%T_StrList;>
<!ELEMENT	FromType		%T_string;>
<!ELEMENT	Synonym		%T_SynStruct;>
<!--~~ <ContigN50>
~~json <number/>
~~-->
<!ELEMENT	ContigN50		%T_int;>
<!--~~ <ScaffoldN50>
~~json <number/>
~~-->
<!ELEMENT	ScaffoldN50		%T_int;>
<!ELEMENT	FtpPath_GenBank		%T_string;>
<!ELEMENT	FtpPath_RefSeq		%T_string;>
<!ELEMENT	FtpPath_Assembly_rpt		%T_string;>
<!ELEMENT	FtpPath_Stats_rpt		%T_string;>
<!ELEMENT	FtpPath_Regions_rpt		%T_string;>
<!ELEMENT	Busco		%T_BuscoT;>
<!ELEMENT	SortOrder		%T_string;>
<!ELEMENT	Meta		%T_xml;>
<!ELEMENT	error		%T_string;>

<!-- Definition of Structure type: T_DocSum -->
<!--~~ <DocumentSummary>
~~json <object name='@uid'/>
~~-->
<!ENTITY	 % T_DocSum "((
			RsUid?,
			GbUid?,
			AssemblyAccession?,
			LastMajorReleaseAccession?,
			LatestAccession?,
			ChainId?,
			AssemblyName?,
			UCSCName?,
			EnsemblName?,
			Taxid?,
			Organism?,
			SpeciesTaxid?,
			SpeciesName?,
			AssemblyType?,
			AssemblyClass?,
			AssemblyStatus?,
			AssemblyStatusSort?,
			WGS?,
			GB_BioProjects?,
			GB_Projects?,
			RS_BioProjects?,
			RS_Projects?,
			BioSampleAccn?,
			BioSampleId?,
			Biosource?,
			Coverage?,
			PartialGenomeRepresentation?,
			Primary?,
			AssemblyDescription?,
			ReleaseLevel?,
			ReleaseType?,
			AsmReleaseDate_GenBank?,
			AsmReleaseDate_RefSeq?,
			SeqReleaseDate?,
			AsmUpdateDate?,
			SubmissionDate?,
			LastUpdateDate?,
			SubmitterOrganization?,
			RefSeq_category?,
			AnomalousList?,
			ExclFromRefSeq?,
			PropertyList?,
			FromType?,
			Synonym?,
			ContigN50?,
			ScaffoldN50?,
			FtpPath_GenBank?,
			FtpPath_RefSeq?,
			FtpPath_Assembly_rpt?,
			FtpPath_Stats_rpt?,
			FtpPath_Regions_rpt?,
			Busco?,
			SortOrder?,
			Meta?
			)
			| error)
			">

<!ELEMENT DocumentSummary %T_DocSum;>
<!ATTLIST DocumentSummary uid CDATA #IMPLIED>

<!ELEMENT DbBuild      %T_string;>
<!ELEMENT DocumentSummarySet (DbBuild?, DocumentSummary*)>
<!ATTLIST DocumentSummarySet status CDATA #REQUIRED>
<!--~~ <DocumentSummarySet>
~~json
   <object key="result">
       <array key="uids" select='DocumentSummary/@uid'/>
       <members select='DocumentSummary'/>
   </object>
~~-->
<!--~~ <eSummaryResult>
~~ json <member/>
~~-->

<!ELEMENT eSummaryResult (DocumentSummarySet?)>