Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

allocation error in pdmatrix 2. #8

Open
cymon opened this issue Feb 14, 2017 · 2 comments
Open

allocation error in pdmatrix 2. #8

cymon opened this issue Feb 14, 2017 · 2 comments

Comments

@cymon
Copy link
Contributor

cymon commented Feb 14, 2017

This is a new one for me... interested? (during mcmc.autoTune())

51 Estimated completion time: 0 days, 15:17:52
52 ......... 1000 - 10:43:24
53 ......... 2000 - 07:18:46
54 ......... 3000 - 03:45:41
55 .........allocation error in pdmatrix 2.

@pgfoster
Copy link
Owner

That one is a malloc() failure, where the C-language stuff requests some memory and is denied. I have seen similar before when I have run out of memory (long ago ....). Could that be what has happened? If so, the fix is boot the other memory hogs off, or find a more commodious machine.

@cymon
Copy link
Contributor Author

cymon commented Feb 14, 2017

Hmm... it could be... but usually if it's killed by the queue for exceeding the memory limit, I get a "killed" response and no indication in the log... besides the queue indicated that it only maxed out at 3.4GB of an allocated 4GB. It could of course be the same problem, but that is not the usual response from the queue... I'll keep an eye on it... thanks.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants