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> spp = c("Caprimulgus aegyptius","Vanellus tricolor","Recurvirostra americana","Centropus nigrorufus","Bombycilla cedrorum","Orthotomus cinereiceps","Ortygospiza atricollis", "Nasica longirostris","Terpsiphone viridis", "Myiothlypis signata","Atlapetes melanopsis","Idiopsar brachyurus","Rauenia bonariensis","Lessonia oreas","Tyrannus niveigularis" ,"Rukia longirostra","Zosterops ponapensis","Ixobrychus involucris","Melanerpes pulcher","Picus viridanus")
> bird_query = datelife::make_datelife_query(input = spp)
---> Phylo-processing 'input'.
* 'input' is not a phylogeny.
---> Making a DateLife query.
---> Runnning TNRS to match input names to reference taxonomy (OTT).
|=====================================================================================================================================================================| 100%
---> Working with the following 20 taxa: Caprimulgus aegyptius | Vanellus tricolor | Recurvirostra americana | Centropus nigrorufus | Bombycilla cedrorum | Orthotomus cinereiceps | Ortygospiza atricollis | Nasica longirostris | Terpsiphone viridis | Basileuterus signatus... omitted 10 taxon names.
DateLife query done!
> phylo_median <- datelife::datelife_search(input = bird_query,
+ summary_format = "phylo_sdm")
... Running a DateLife search.
... Searching DateLife's OpenTree chronogram database version v2022.01.28
Search done!
Input taxon names were found in 6 chronograms.
Trying with overlap = 2
Success!
1 out of 6 chronograms tried: Ok.
2 out of 6 chronograms tried: Ok.
3 out of 6 chronograms tried: Ok.
4 out of 6 chronograms tried: Ok.
5 out of 6 chronograms tried: Ok.
6 out of 6 chronograms tried: Ok.
Synthesizing 6 chronograms with SDM
... No target_tree was provided, obtaining a tree topology from Open Tree synthetic phylogeny.
|=====================================================================================================================================================================| 100%
Error in if (is.numeric(input$ott_id) & !is.na(input$ott_id)) { :
the condition has length > 1```
The text was updated successfully, but these errors were encountered:
The text was updated successfully, but these errors were encountered: