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Filter PomBase parent disease associations with PB REF:0000003 #1184

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ValWood opened this issue Jun 25, 2024 · 4 comments
Open

Filter PomBase parent disease associations with PB REF:0000003 #1184

ValWood opened this issue Jun 25, 2024 · 4 comments
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@ValWood
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ValWood commented Jun 25, 2024

e.g
Screenshot 2024-06-25 at 09 30 29

non urgent

@kimrutherford
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Could you explain a bit more? I don't understand what's needed.

@ValWood
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ValWood commented Jun 26, 2024

Sorry!

So you filtered PomBAse exact annotations with PB REF:0000003

We should also filter any annotations to parent terms with PB REF:0000003

@kimrutherford
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Ah, OK. That's trickier. :-)

I did the exact filter with just a bit of Perl. Filtering based on ontology structure will need some database querying (and a bit of Perl). It will be like a simplified version of the GO filtering code.

@kimrutherford kimrutherford self-assigned this Jun 26, 2024
@ValWood
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ValWood commented Jun 26, 2024

very low priority, shelve it for now

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