Welcome to the repo for module 3. The demos/labs will be done within Jupyter Lab. To avoid all issues with compatibility and versions we recommend you to create and use a new conda environment. Download the environment.yml file and then run:
conda env create -f {path to the enviroment.yml file}
conda activate imaginganalysis
jupyter labextension install @jupyter-widgets/jupyterlab-manager ipyevents ipycanvas
jupyter lab
You will need the datasets
-
imaging.h5 (in this repo)
-
http://www.portugueslab.com/courses/LSMLSDA_2020/datasets/plane45.tif