From 449963913c178f759b6830fcd6c9bf158178484f Mon Sep 17 00:00:00 2001 From: Yujia Zheng Date: Mon, 13 Jan 2025 10:55:48 -0500 Subject: [PATCH 1/3] Update BOSS.py --- causallearn/search/PermutationBased/BOSS.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/causallearn/search/PermutationBased/BOSS.py b/causallearn/search/PermutationBased/BOSS.py index 85551b8..fd1bcdc 100644 --- a/causallearn/search/PermutationBased/BOSS.py +++ b/causallearn/search/PermutationBased/BOSS.py @@ -95,11 +95,11 @@ def boss( ) elif score_func == "local_score_BIC": # SEM BIC score - warnings.warn("Please use 'local_score_BIC_from_cov' instead") + warnings.warn("Using 'local_score_BIC_from_cov' instead for efficiency") if parameters is None: parameters = {"lambda_value": 2} localScoreClass = LocalScoreClass( - data=X, local_score_fun=local_score_BIC, parameters=parameters + data=X, local_score_fun=local_score_BIC_from_cov, parameters=parameters ) elif score_func == "local_score_BIC_from_cov": # SEM BIC score From effde3aac4fada26517ba885beadc8be6d3e62ab Mon Sep 17 00:00:00 2001 From: Yujia Zheng Date: Mon, 13 Jan 2025 10:56:15 -0500 Subject: [PATCH 2/3] Update GRaSP.py --- causallearn/search/PermutationBased/GRaSP.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/causallearn/search/PermutationBased/GRaSP.py b/causallearn/search/PermutationBased/GRaSP.py index 2ac106b..9de4b6b 100644 --- a/causallearn/search/PermutationBased/GRaSP.py +++ b/causallearn/search/PermutationBased/GRaSP.py @@ -153,11 +153,11 @@ def grasp( ) elif score_func == "local_score_BIC": # SEM BIC score - warnings.warn("Please use 'local_score_BIC_from_cov' instead") + warnings.warn("Using 'local_score_BIC_from_cov' instead for efficiency") if parameters is None: parameters = {"lambda_value": 2} localScoreClass = LocalScoreClass( - data=X, local_score_fun=local_score_BIC, parameters=parameters + data=X, local_score_fun=local_score_BIC_from_cov, parameters=parameters ) elif score_func == "local_score_BIC_from_cov": # SEM BIC score From b06c81f9157dd85c780fb0ed6705575aaa0eca49 Mon Sep 17 00:00:00 2001 From: Yujia Zheng Date: Mon, 13 Jan 2025 10:56:28 -0500 Subject: [PATCH 3/3] Update setup.py --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 81a1401..7751250 100644 --- a/setup.py +++ b/setup.py @@ -3,7 +3,7 @@ with open('README.md', 'r') as fh: README = fh.read() -VERSION = '0.1.3.9' +VERSION = '0.1.4.0' setuptools.setup( name='causal-learn',