From bc5f1ae4fa19859009b74e6494b63e906e6a8e15 Mon Sep 17 00:00:00 2001 From: scaramallion Date: Sun, 11 Aug 2024 11:36:44 +1000 Subject: [PATCH] Switch build system to flit (#965) --- .github/workflows/merge-pytest.yml | 114 +- .github/workflows/merge-typing.yml | 16 +- .github/workflows/pr-pytest-apps.yml | 76 +- .github/workflows/pr-pytest.yml | 114 +- .github/workflows/pr-type-lint-format.yml | 22 +- .github/workflows/publish-pypi-deploy.yml | 13 +- .gitignore | 4 + poetry.lock | 1313 --------------------- pyproject.toml | 87 +- 9 files changed, 164 insertions(+), 1595 deletions(-) delete mode 100644 poetry.lock diff --git a/.github/workflows/merge-pytest.yml b/.github/workflows/merge-pytest.yml index e52090686..9fdc64ec9 100644 --- a/.github/workflows/merge-pytest.yml +++ b/.github/workflows/merge-pytest.yml @@ -51,78 +51,52 @@ jobs: id: setup-python with: python-version: ${{ matrix.python-version }} - - name: Install poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v4 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - name: Install dependencies - run: poetry install --no-interaction --extras tests + run: pip install .[tests] - name: Test with pytest env: PYTHON_VERSION: ${{ matrix.python-version }} run: | - poetry run pytest --cov pynetdicom --ignore=pynetdicom/apps && - poetry run coverage xml + pytest --cov pynetdicom --ignore=pynetdicom/apps && coverage xml - name: Send coverage results if: success() uses: codecov/codecov-action@v4 env: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} - pydicom-dev: - # Matrix builds with development pydicom - runs-on: ubuntu-latest - timeout-minutes: 30 - strategy: - fail-fast: false - matrix: - python-version: ['3.10', '3.11', '3.12'] - - steps: - - uses: actions/checkout@v4 - with: - fetch-depth: 2 - - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v5 - id: setup-python - with: - python-version: ${{ matrix.python-version }} - - name: Install poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v4 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - - name: Install dependencies - run: poetry install --no-interaction --extras tests - - name: Switch to development pydicom - run: | - pip install git+https://github.com/pydicom/pydicom - - name: Test with pytest - env: - PYTHON_VERSION: ${{ matrix.python-version }} - run: | - poetry run pytest --cov pynetdicom --ignore=pynetdicom/apps && - poetry run coverage xml - - name: Send coverage results - if: success() - uses: codecov/codecov-action@v4 - env: - CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} + # pydicom-dev: + # # Matrix builds with development pydicom + # runs-on: ubuntu-latest + # timeout-minutes: 30 + # strategy: + # fail-fast: false + # matrix: + # python-version: ['3.10', '3.11', '3.12'] + # + # steps: + # - uses: actions/checkout@v4 + # with: + # fetch-depth: 2 + # - name: Set up Python ${{ matrix.python-version }} + # uses: actions/setup-python@v5 + # id: setup-python + # with: + # python-version: ${{ matrix.python-version }} + # - name: Install dependencies + # run: pip install .[tests] + # - name: Switch to development pydicom + # run: | + # pip install git+https://github.com/pydicom/pydicom + # - name: Test with pytest + # env: + # PYTHON_VERSION: ${{ matrix.python-version }} + # run: | + # pytest --cov pynetdicom --ignore=pynetdicom/apps && coverage xml + # - name: Send coverage results + # if: success() + # uses: codecov/codecov-action@v4 + # env: + # CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} pydicom-release: # Matrix builds with released pydicom @@ -142,28 +116,14 @@ jobs: uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} - - name: Install poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v4 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - name: Install dependencies run: | - poetry install --no-interaction --extras tests && - poetry run pip list + pip install -e .[tests] - name: Test with pytest env: PYTHON_VERSION: ${{ matrix.python-version }} run: | - poetry run pytest --cov pynetdicom --ignore=pynetdicom/apps && - poetry run coverage xml + pytest --cov pynetdicom --ignore=pynetdicom/apps - name: Send coverage results if: success() uses: codecov/codecov-action@v4 diff --git a/.github/workflows/merge-typing.yml b/.github/workflows/merge-typing.yml index d759fa5b8..28291c07e 100644 --- a/.github/workflows/merge-typing.yml +++ b/.github/workflows/merge-typing.yml @@ -21,20 +21,8 @@ jobs: id: setup-python with: python-version: ${{ matrix.python-version }} - - name: Install poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v4 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - name: Install dependencies - run: poetry install --no-interaction --no-root --extras dev + run: pip install .[dev] - name: Run typing check with mypy run: | - poetry run mypy + mypy diff --git a/.github/workflows/pr-pytest-apps.yml b/.github/workflows/pr-pytest-apps.yml index e73942843..191e4a5d7 100644 --- a/.github/workflows/pr-pytest-apps.yml +++ b/.github/workflows/pr-pytest-apps.yml @@ -6,7 +6,35 @@ on: jobs: - pydicom-dev: + # pydicom-dev: + # runs-on: ubuntu-latest + # timeout-minutes: 30 + # strategy: + # fail-fast: false + # matrix: + # python-version: ['3.10'] + # + # steps: + # - uses: actions/checkout@v4 + # with: + # fetch-depth: 2 + # - name: Set up Python ${{ matrix.python-version }} + # uses: actions/setup-python@v5 + # id: setup-python + # with: + # python-version: ${{ matrix.python-version }} + # - name: Install dependencies + # run: pip install -e .[tests] + # - name: Switch to development pydicom + # run: | + # pip install git+https://github.com/pydicom/pydicom + # - name: Test with pytest + # env: + # PYTHON_VERSION: ${{ matrix.python-version }} + # run: | + # pytest -x --ignore=pynetdicom/tests + + pydicom-release: runs-on: ubuntu-latest timeout-minutes: 30 strategy: @@ -23,52 +51,10 @@ jobs: id: setup-python with: python-version: ${{ matrix.python-version }} - - name: Install poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v4 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - name: Install dependencies - run: poetry install --no-interaction --extras tests - - name: Switch to development pydicom - run: | - pip install git+https://github.com/pydicom/pydicom && - poetry run pip list + run: pip install -e .[tests] - name: Test with pytest env: PYTHON_VERSION: ${{ matrix.python-version }} run: | - poetry run pytest -x --ignore=pynetdicom/tests - - # pydicom-release: - # runs-on: ubuntu-latest - # timeout-minutes: 30 - # strategy: - # fail-fast: false - # matrix: - # python-version: ['3.9'] - # - # steps: - # - uses: actions/checkout@v4 - # with: - # fetch-depth: 2 - # - name: Set up Python ${{ matrix.python-version }} - # uses: actions/setup-python@v5 - # with: - # python-version: ${{ matrix.python-version }} - # - name: Install dependencies - # run: | - # python -m pip install --upgrade pip - # pip install pytest pydicom sqlalchemy pyfakefs - # - name: Test with pytest - # env: - # PYTHON_VERSION: ${{ matrix.python-version }} - # run: | - # pytest --ignore=pynetdicom/tests + pytest -x --ignore=pynetdicom/tests diff --git a/.github/workflows/pr-pytest.yml b/.github/workflows/pr-pytest.yml index 3c4eb68e0..37327bc8a 100644 --- a/.github/workflows/pr-pytest.yml +++ b/.github/workflows/pr-pytest.yml @@ -54,77 +54,51 @@ jobs: id: setup-python with: python-version: ${{ matrix.python-version }} - - name: Install poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v4 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - name: Install dependencies - run: poetry install --no-interaction --extras tests + run: pip install -e .[tests] - name: Get OpenSSL version run: | - poetry run python -c "import ssl; print('OpenSSL:', ssl.OPENSSL_VERSION_INFO)" + python -c "import ssl; print('OpenSSL:', ssl.OPENSSL_VERSION_INFO)" - name: Test with pytest env: PYTHON_VERSION: ${{ matrix.python-version }} run: | - poetry run pytest -x --cov pynetdicom --ignore=pynetdicom/apps && - poetry run coverage xml + pytest -x --cov pynetdicom --ignore=pynetdicom/apps - name: Send coverage results if: ${{ success() }} uses: codecov/codecov-action@v4 - pydicom-dev: - # Matrix builds with development pydicom - runs-on: ubuntu-latest - timeout-minutes: 30 - strategy: - fail-fast: false - matrix: - python-version: ['3.10'] - - steps: - - uses: actions/checkout@v4 - with: - fetch-depth: 2 - - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v5 - id: setup-python - with: - python-version: ${{ matrix.python-version }} - - name: Install poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v4 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - - name: Install dependencies - run: poetry install --no-interaction --extras tests - - name: Switch to development pydicom - run: | - pip install git+https://github.com/pydicom/pydicom - - name: Test with pytest - env: - PYTHON_VERSION: ${{ matrix.python-version }} - run: | - poetry run pytest -x --cov pynetdicom --ignore=pynetdicom/apps && - poetry run coverage xml - - name: Send coverage results - if: ${{ success() }} - uses: codecov/codecov-action@v4 + # pydicom-dev: + # # Matrix builds with development pydicom + # runs-on: ubuntu-latest + # timeout-minutes: 30 + # strategy: + # fail-fast: false + # matrix: + # python-version: ['3.10'] + # + # steps: + # - uses: actions/checkout@v4 + # with: + # fetch-depth: 2 + # - name: Set up Python ${{ matrix.python-version }} + # uses: actions/setup-python@v5 + # id: setup-python + # with: + # python-version: ${{ matrix.python-version }} + # - name: Install dependencies + # run: pip install -e .[tests] + # - name: Switch to development pydicom + # run: | + # pip install git+https://github.com/pydicom/pydicom + # - name: Test with pytest + # env: + # PYTHON_VERSION: ${{ matrix.python-version }} + # run: | + # pytest -x --cov pynetdicom --ignore=pynetdicom/apps && coverage xml + # - name: Send coverage results + # if: ${{ success() }} + # uses: codecov/codecov-action@v4 pydicom-release: # Matrix builds with released pydicom @@ -144,31 +118,17 @@ jobs: uses: actions/setup-python@v5 with: python-version: ${{ matrix.python-version }} - - name: Install poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v4 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - name: Install dependencies run: | - poetry install --no-interaction --extras tests && - poetry run pip list + pip install -e .[tests] - name: Get OpenSSL version run: | - poetry run python -c "import ssl; print('OpenSSL:', ssl.OPENSSL_VERSION_INFO)" + python -c "import ssl; print('OpenSSL:', ssl.OPENSSL_VERSION_INFO)" - name: Test with pytest env: PYTHON_VERSION: ${{ matrix.python-version }} run: | - poetry run pytest -x --cov pynetdicom --ignore=pynetdicom/apps && - poetry run coverage xml + pytest -x --cov pynetdicom --ignore=pynetdicom/apps - name: Send coverage results if: ${{ success() }} uses: codecov/codecov-action@v4 diff --git a/.github/workflows/pr-type-lint-format.yml b/.github/workflows/pr-type-lint-format.yml index 3cbda228d..21a166a33 100644 --- a/.github/workflows/pr-type-lint-format.yml +++ b/.github/workflows/pr-type-lint-format.yml @@ -21,29 +21,17 @@ jobs: id: setup-python with: python-version: ${{ matrix.python-version }} - - name: Install poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v4 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/poetry.lock') }} - name: Install dependencies - run: poetry install --no-interaction --no-root --extras dev + run: pip install -e .[dev] - name: Run type check using mypy run: | - poetry run mypy + mypy - name: Run formatting check using black run: | - poetry run black . --check + black . --check - name : Run linting check using ruff run: | - poetry run ruff check . + ruff check . - name: Run spell check using codespell run: | - poetry run codespell -d pynetdicom + codespell -d pynetdicom diff --git a/.github/workflows/publish-pypi-deploy.yml b/.github/workflows/publish-pypi-deploy.yml index cdaf0931f..b9c66a76c 100644 --- a/.github/workflows/publish-pypi-deploy.yml +++ b/.github/workflows/publish-pypi-deploy.yml @@ -18,16 +18,13 @@ jobs: with: python-version: '3.10' - - name: Install poetry - uses: snok/install-poetry@v1 - with: - virtualenvs-create: true - virtualenvs-in-project: true - installer-parallel: true + - name: Install flit + run: | + pip install -U flit - name: Build package run: | - poetry build + flit build - name: Upload artifacts if: ${{ success() }} @@ -42,7 +39,7 @@ jobs: runs-on: ubuntu-latest environment: name: pypi - url: https://pypi.org/project/pylibjpeg-libjpeg/ + url: https://pypi.org/project/pynetdicom/ permissions: id-token: write diff --git a/.gitignore b/.gitignore index 213cc154d..fca1b3eb2 100644 --- a/.gitignore +++ b/.gitignore @@ -100,3 +100,7 @@ env*/ # mypy .mypy* + +# Misc +issues/* +.asv/* diff --git a/poetry.lock b/poetry.lock deleted file mode 100644 index eadd40baf..000000000 --- a/poetry.lock +++ /dev/null @@ -1,1313 +0,0 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - -[[package]] -name = "alabaster" -version = "0.7.13" -description = "A configurable sidebar-enabled Sphinx theme" -optional = true -python-versions = ">=3.6" -files = [ - 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