From b121593d7e36c1bea14f5dcc18591fd0f36e9a65 Mon Sep 17 00:00:00 2001 From: Mathieu Boudreau Date: Fri, 11 Oct 2024 22:46:08 -0300 Subject: [PATCH] Update T1/R1 colorscales --- .../03-IR_DataFitting.md | 4 +- .../Notebooks/Figure-2-1-4.ipynb | 1039 +++++- .../Notebooks/lipari.csv | 256 ++ .../03-VFA_DataFitting.md | 3 +- .../Notebooks/Figure-2-2-6.ipynb | 1455 ++++++-- .../Notebooks/lipari.csv | 256 ++ 2 T1 Mapping/2-3 MP2RAGE/03-DataFitting.md | 4 +- .../2-3 MP2RAGE/Notebooks/Figure-2-3-2.ipynb | 1041 +++++- 2 T1 Mapping/2-3 MP2RAGE/Notebooks/lipari.csv | 256 ++ .../03-DataFitting.md | 5 +- .../Notebooks/Figure-6-1-6.ipynb | 3165 ++++++++++++++++- .../Notebooks/lipari.csv | 256 ++ .../Notebooks/navia.csv | 256 ++ bibliography/ir.bib | 14 +- 14 files changed, 7709 insertions(+), 301 deletions(-) create mode 100644 2 T1 Mapping/2-1 Inversion Recovery/Notebooks/lipari.csv create mode 100644 2 T1 Mapping/2-2 Variable Flip Angle/Notebooks/lipari.csv create mode 100644 2 T1 Mapping/2-3 MP2RAGE/Notebooks/lipari.csv create mode 100644 6 Magnetization Transfer Imaging/1 Quantitative Magnetization Transfer/Notebooks/lipari.csv create mode 100644 6 Magnetization Transfer Imaging/1 Quantitative Magnetization Transfer/Notebooks/navia.csv diff --git a/2 T1 Mapping/2-1 Inversion Recovery/03-IR_DataFitting.md b/2 T1 Mapping/2-1 Inversion Recovery/03-IR_DataFitting.md index 0f143a1..d44e234 100644 --- a/2 T1 Mapping/2-1 Inversion Recovery/03-IR_DataFitting.md +++ b/2 T1 Mapping/2-1 Inversion Recovery/03-IR_DataFitting.md @@ -42,9 +42,11 @@ Fitting comparison of simulated data (blue markers) with _T_{sub}`1` = 1 s and T :::{figure} #irFig5jn :label: irPlot4 :enumerator: 2.5 -Example inversion recovery dataset of a healthy adult brain (left). Inversion times used to acquire this magnitude image dataset were 30 ms, 530 ms, 1030 ms, and 1530 ms, and the TR used was 1550 ms. The _T_{sub}`1` map (right) was fitted using a RD-NLS algorithm. +Example inversion recovery dataset of a healthy adult brain (left). Inversion times used to acquire this magnitude image dataset were 30 ms, 530 ms, 1030 ms, and 1530 ms, and the TR used was 1550 ms. The _T_{sub}`1` map[^footnote] (right) was fitted using a RD-NLS algorithm. ::: +[^footnote]: _T_{sub}`1` maps are displayed using the Lipari colorscale, as proposed by [@fuderer2024co]. + ````{admonition} Click here to view the qMRLab (MATLAB/Octave) code that generated [](#irPlot3). :class: tip, dropdown diff --git a/2 T1 Mapping/2-1 Inversion Recovery/Notebooks/Figure-2-1-4.ipynb b/2 T1 Mapping/2-1 Inversion Recovery/Notebooks/Figure-2-1-4.ipynb index 231d193..29526ad 100644 --- a/2 T1 Mapping/2-1 Inversion Recovery/Notebooks/Figure-2-1-4.ipynb +++ b/2 T1 Mapping/2-1 Inversion Recovery/Notebooks/Figure-2-1-4.ipynb @@ -47239,23 +47239,1027 @@ "colorscale": [ [ 0, - "rgb(12,51,131)" + "rgb(0.01137,0.07324,0.148284)" ], [ - 0.25, - "rgb(10,136,186)" + 0.00392156862745098, + "rgb(0.013965,0.079062,0.15537)" ], [ - 0.5, - "rgb(242,211,56)" + 0.00784313725490196, + "rgb(0.015899,0.084718,0.162521)" ], [ - 0.75, - "rgb(242,143,56)" + 0.011764705882352941, + 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