Makefile

CC:=g++
ifneq (,$(findstring Darwin,$(shell uname)))
        exist = $(shell if [ -e '/usr/local/bin/g++-10' ]; then echo "exist"; else echo "notexist"; fi;)
        ifeq ($(exist),exist)
                CC:=g++-10
        else
                exist = $(shell if [ -e '/usr/local/bin/g++-9' ]; then echo "exist"; else echo "notexist"; fi;)
                ifeq ($(exist),exist)
                        CC:=g++-9
                else
                        CC:=g++-8
                endif
        endif
endif

OMPFLG=-fopenmp
HASHFLG=-Wno-deprecated
BUILDFLG=-w -ffunction-sections -fdata-sections -fmodulo-sched -msse
EXE_TAL=bin/MS-single-to-table
EXE_T2S=bin/MS-table-to-single
EXE_CMP=bin/MS-comp-taxa
EXE_CPD=bin/MS-comp-taxa-dynamic
EXE_MMR=bin/MS-make-ref

tax:
	$(CC) -o $(EXE_TAL) src/taxa_sel.cpp $(HASHFLG) $(BUILDFLG) $(OMPFLG)
	$(CC) -o $(EXE_T2S) src/table2single.cpp $(HASHFLG) $(BUILDFLG) $(OMPFLG)
	$(CC) -o $(EXE_CMP) src/comp_sam.cpp $(HASHFLG) $(BUILDFLG) $(OMPFLG)
	$(CC) -o $(EXE_CPD) src/comp_sam_dynamic.cpp $(HASHFLG) $(BUILDFLG) $(OMPFLG)
	$(CC) -o $(EXE_MMR) src/make_ref.cpp $(HASHFLG) $(BUILDFLG) $(OMPFLG)

clean:
	rm -rf bin/* src/*.o