All XY shape error

[alecandido]

With the branch fix_collect_shots issues with rabi and T1 are solved, now I can run it in 2 qubits.

But in routine allXY I got an error:

[Qibo 0.2.7|INFO|2024-09-12 12:20:29]: Loading platform /home/users/javier.serrano/lab/qibolab_platforms_qrc/tii3qw81_zcu111
[Qibo 0.2.7|INFO|2024-09-12 12:20:29]: Using qibolab (/home/users/javier.serrano/lab/qibolab_platforms_qrc/tii3qw81_zcu111) backend on /CPU:0
�[33;20m[Qibocal 0.0.11|WARNING|2024-09-12 12:20:29]: Deleting previous directory reports/20240912_experiment.�[0m
�[38;20m[Qibocal 0.0.11|INFO|2024-09-12 12:20:29]: Creating directory reports/20240912_experiment.�[0m
[Qibo 0.2.7|INFO|2024-09-12 12:20:29]: Connecting to instrument <qibolab.instruments.rfsoc.driver.RFSoC object at 0x7123146d2d40>.
[Qibo 0.2.7|INFO|2024-09-12 12:20:29]: Connecting to instrument <qibolab.instruments.rohde_schwarz.SGS100A object at 0x7123044a3130>.
�[38;20m[Qibocal 0.0.11|INFO|2024-09-12 12:20:30]: Executing mode AUTOCALIBRATION on allXY.�[0m
[Qibo 0.2.7|INFO|2024-09-12 12:20:30]: Minimal execution time (sequence): 0.05376
/home/users/javier.serrano/lab/qibolab_platforms_qrc/tii3qw81_zcu111
Connected to: Rohde&Schwarz SGS100A (serial:1416.0505k02/114166, firmware:4.2.76.0-4.30.046.295) in 0.18s
Traceback (most recent call last):
  File "/nfs/users/javier.serrano/lab/julEnv/bin/qq", line 6, in <module>
    sys.exit(command())
  File "/nfs/users/javier.serrano/lab/julEnv/lib/python3.10/site-packages/click/core.py", line 1157, in __call__
    return self.main(*args, **kwargs)
  File "/nfs/users/javier.serrano/lab/julEnv/lib/python3.10/site-packages/click/core.py", line 1078, in main
    rv = self.invoke(ctx)
  File "/nfs/users/javier.serrano/lab/julEnv/lib/python3.10/site-packages/click/core.py", line 1688, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/nfs/users/javier.serrano/lab/julEnv/lib/python3.10/site-packages/click/core.py", line 1434, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/nfs/users/javier.serrano/lab/julEnv/lib/python3.10/site-packages/click/core.py", line 783, in invoke
    return __callback(*args, **kwargs)
  File "/nfs/users/javier.serrano/lab/qibocal/src/qibocal/cli/_base.py", line 72, in auto
    autocalibrate(runcard, folder, force, update)
  File "/nfs/users/javier.serrano/lab/qibocal/src/qibocal/cli/autocalibration.py", line 51, in autocalibrate
    history = run(output=path, runcard=runcard, mode=AUTOCALIBRATION)
  File "/nfs/users/javier.serrano/lab/qibocal/src/qibocal/auto/execute.py", line 106, in run
    instance.run_protocol(
  File "/nfs/users/javier.serrano/lab/qibocal/src/qibocal/auto/execute.py", line 77, in run_protocol
    completed = task.run(
  File "/nfs/users/javier.serrano/lab/qibocal/src/qibocal/auto/task.py", line 97, in run
    completed.data, completed.data_time = operation.acquisition(
  File "/nfs/users/javier.serrano/lab/qibocal/src/qibocal/auto/operation.py", line 42, in wrapper
    out = func(*args, **kwds)
  File "/nfs/users/javier.serrano/lab/qibocal/src/qibocal/protocols/allxy/allxy.py", line 102, in _acquisition
    results = [
  File "/nfs/users/javier.serrano/lab/qibocal/src/qibocal/protocols/allxy/allxy.py", line 103, in <listcomp>
    platform.execute_pulse_sequence(sequence, options) for sequence in sequences
  File "/nfs/users/javier.serrano/lab/qibolab/src/qibolab/platform/platform.py", line 196, in execute_pulse_sequence
    return self._execute(sequence, options, **kwargs)
  File "/nfs/users/javier.serrano/lab/qibolab/src/qibolab/platform/platform.py", line 170, in _execute
    new_result = instrument.play(
  File "/nfs/users/javier.serrano/lab/qibolab/src/qibolab/instruments/rfsoc/driver.py", line 260, in play
    toti, totq = self._execute_pulse_sequence(sequence, qubits, opcode)
  File "/nfs/users/javier.serrano/lab/qibolab/src/qibolab/instruments/rfsoc/driver.py", line 187, in _execute_pulse_sequence
    return self._try_to_execute(server_commands, self.host, self.port)
  File "/nfs/users/javier.serrano/lab/qibolab/src/qibolab/instruments/rfsoc/driver.py", line 90, in _try_to_execute
    raise e
  File "/nfs/users/javier.serrano/lab/qibolab/src/qibolab/instruments/rfsoc/driver.py", line 78, in _try_to_execute
    return client.connect(server_commands, host, port)
  File "/nfs/users/javier.serrano/lab/qibosoq/src/qibosoq/client.py", line 58, in connect
    raise QibosoqError(results)
qibosoq.client.QibosoqError: Traceback (most recent call last):
  File "/home/xilinx/qibosoq/src/qibosoq/server.py", line 140, in handle
    results = execute_program(data, self.server.qick_soc)
  File "/home/xilinx/qibosoq/src/qibosoq/server.py", line 103, in execute_program
    toti, totq = program.perform_experiment(
  File "/home/xilinx/qibosoq/src/qibosoq/programs/base.py", line 257, in perform_experiment
    return self.collect_shots()[-2:]
  File "/home/xilinx/qibosoq/src/qibosoq/programs/base.py", line 289, in collect_shots
    np.stack((self.di_buf[idx], self.dq_buf[idx]))[:, : np.prod(shape[1:])]
ValueError: operands could not be broadcast together with shapes (2,1024) (3,1) 

Originally posted by @JavierSerranoGarcia in qiboteam/qibolab_platforms_qrc#177 (comment)