From c9b643a655a2c4b661ffcee0a1f37e09a2e27ab9 Mon Sep 17 00:00:00 2001 From: EllaKaye Date: Mon, 29 Jan 2024 11:29:05 +0000 Subject: [PATCH] Fix encoding and doi in man files --- src/library/datasets/man/penguins.Rd | 15 ++++++++------- src/library/datasets/man/penguins_raw.Rd | 18 ++++++++++-------- 2 files changed, 18 insertions(+), 15 deletions(-) diff --git a/src/library/datasets/man/penguins.Rd b/src/library/datasets/man/penguins.Rd index beecaf3a9d3..7e68039bfe5 100644 --- a/src/library/datasets/man/penguins.Rd +++ b/src/library/datasets/man/penguins.Rd @@ -1,4 +1,5 @@ \name{penguins} +\encoding{UTF-8} \docType{data} \alias{penguins} \title{Size Measurements for Adult Foraging Penguins near Palmer Station, Antarctica} @@ -11,7 +12,7 @@ This is a subset of \code{\link{penguins_raw}}. \format{ A tibble with 344 rows and 8 variables: \describe{ - \item{species}{a factor denoting penguin species (Adélie, Chinstrap and Gentoo)} + \item{species}{a factor denoting penguin species (Adelie, Chinstrap and Gentoo)} \item{island}{a factor denoting island in Palmer Archipelago, Antarctica (Biscoe, Dream or Torgersen)} \item{bill_length_mm}{a number denoting bill length (millimeters)} \item{bill_depth_mm}{a number denoting bill depth (millimeters)} @@ -21,15 +22,15 @@ This is a subset of \code{\link{penguins_raw}}. \item{year}{an integer denoting the study year (2007, 2008, or 2009)} } } -\references{ -Gorman, K. B., Williams, T. D. and Fraser, W. R. (2014) Ecological Sexual Dimorphism and Environmental Variability within a Community of Antarctic Penguins (Genus Pygoscelis). PLoS ONE \bold{9}, 3, e90081. doi:10.1371/journal.pone.0090081. -} \source{ -{Adélie penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Adélie penguins (Pygoscelis adeliae) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 5. Environmental Data Initiative.} \ifelse{text}{doi: 10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f (URL: https://doi.org/10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f)}{\ifelse{latex}{doi:\out{\nobreakspace{}}\href{https://doi.org/10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f}{10.6073\out{\slash{}}pasta\out{\slash{}}98b16d7d563f265cb52372c8ca99e60f}}{doi: \href{https://doi.org/10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f}{10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f}}} +\enc{Adélie}{Adelie} penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female \enc{Adélie}{Adelie} penguins (Pygoscelis adeliae) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 5. Environmental Data Initiative, \doi{10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f}. -{Gentoo penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Gentoo penguin (Pygoscelis papua) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 5. Environmental Data Initiative.} \ifelse{text}{doi: 10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689 (URL: https://doi.org/10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689)}{\ifelse{latex}{doi:\out{\nobreakspace{}}\href{https://doi.org/10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689}{10.6073\out{\slash{}}pasta\out{\slash{}}7fca67fb28d56ee2ffa3d9370ebda689}}{doi: \href{https://doi.org/10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689}{10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689}}} +Gentoo penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Gentoo penguin (Pygoscelis papua) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 5. Environmental Data Initiative, \doi{10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689}. -{Chinstrap penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Chinstrap penguin (Pygoscelis antarcticus) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 6. Environmental Data Initiative.} \ifelse{text}{doi: 10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e (URL: https://doi.org/10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e)}{\ifelse{latex}{doi:\out{\nobreakspace{}}\href{https://doi.org/10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e}{10.6073\out{\slash{}}pasta\out{\slash{}}c14dfcfada8ea13a17536e73eb6fbe9e}}{doi: \href{https://doi.org/10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e}{10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e}}} +Chinstrap penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Chinstrap penguin (Pygoscelis antarcticus) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 6. Environmental Data Initiative, \doi{10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e}. +} +\references{ +Gorman, K. B., Williams, T. D. and Fraser, W. R. (2014) Ecological Sexual Dimorphism and Environmental Variability within a Community of Antarctic Penguins (Genus Pygoscelis). PLoS ONE \bold{9}, 3, e90081. doi:10.1371/journal.pone.0090081. } \note{ This data is also available in the \CRANpkg{palmerpenguins} package. See also \url{https://allisonhorst.github.io/palmerpenguins/} for further details and resources. diff --git a/src/library/datasets/man/penguins_raw.Rd b/src/library/datasets/man/penguins_raw.Rd index 0918e1bc1f8..9cca9fd6810 100644 --- a/src/library/datasets/man/penguins_raw.Rd +++ b/src/library/datasets/man/penguins_raw.Rd @@ -1,8 +1,10 @@ -\title{Penguin Size, Clutch, and Blood Isotope Data for Foraging Adults near Palmer Station, Antarctica} \name{penguins_raw} +\encoding{UTF-8} +\docType{data} \alias{penguins_raw} +\title{Penguin Size, Clutch, and Blood Isotope Data for Foraging Adults near Palmer Station, Antarctica} \description{ - Includes nesting observations, penguin size data, and isotope measurements from blood samples for adult Adélie, Chinstrap, and Gentoo penguins. + Includes nesting observations, penguin size data, and isotope measurements from blood samples for adult \enc{Adélie}{Adelie}, Chinstrap, and Gentoo penguins. } \usage{penguins_raw} \format{ @@ -28,15 +30,15 @@ \item{Sample}{a character string denoting whether the bird featured in the test or train set (or neither) in the original analysis (see References).} } } -\references{ -Gorman, K. B., Williams, T. D. and Fraser, W. R. (2014) Ecological Sexual Dimorphism and Environmental Variability within a Community of Antarctic Penguins (Genus Pygoscelis). PLoS ONE \bold{9}, 3, e90081. doi:10.1371/journal.pone.0090081. -} \source{ -{Adélie penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Adélie penguins (Pygoscelis adeliae) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 5. Environmental Data Initiative.} \ifelse{text}{doi: 10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f (URL: https://doi.org/10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f)}{\ifelse{latex}{doi:\out{\nobreakspace{}}\href{https://doi.org/10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f}{10.6073\out{\slash{}}pasta\out{\slash{}}98b16d7d563f265cb52372c8ca99e60f}}{doi: \href{https://doi.org/10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f}{10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f}}} +\enc{Adélie}{Adelie} penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female \enc{Adélie}{Adelie} penguins (Pygoscelis adeliae) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 5. Environmental Data Initiative, \doi{10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f}. -{Gentoo penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Gentoo penguin (Pygoscelis papua) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 5. Environmental Data Initiative.} \ifelse{text}{doi: 10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689 (URL: https://doi.org/10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689)}{\ifelse{latex}{doi:\out{\nobreakspace{}}\href{https://doi.org/10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689}{10.6073\out{\slash{}}pasta\out{\slash{}}7fca67fb28d56ee2ffa3d9370ebda689}}{doi: \href{https://doi.org/10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689}{10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689}}} +Gentoo penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Gentoo penguin (Pygoscelis papua) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 5. Environmental Data Initiative, \doi{10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689}. -{Chinstrap penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Chinstrap penguin (Pygoscelis antarcticus) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 6. Environmental Data Initiative.} \ifelse{text}{doi: 10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e (URL: https://doi.org/10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e)}{\ifelse{latex}{doi:\out{\nobreakspace{}}\href{https://doi.org/10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e}{10.6073\out{\slash{}}pasta\out{\slash{}}c14dfcfada8ea13a17536e73eb6fbe9e}}{doi: \href{https://doi.org/10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e}{10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e}}} +Chinstrap penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Chinstrap penguin (Pygoscelis antarcticus) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 6. Environmental Data Initiative, \doi{10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e}. +} +\references{ +Gorman, K. B., Williams, T. D. and Fraser, W. R. (2014) Ecological Sexual Dimorphism and Environmental Variability within a Community of Antarctic Penguins (Genus Pygoscelis). PLoS ONE \bold{9}, 3, e90081. doi:10.1371/journal.pone.0090081. } \note{ This data is also available in the \CRANpkg{palmerpenguins} package. See also \url{https://allisonhorst.github.io/palmerpenguins/} for further details and resources.