diff --git a/revdep/dplyr/README.md b/revdep/dplyr/README.md
index 0b0d11a9c8..6f9ce7665d 100644
--- a/revdep/dplyr/README.md
+++ b/revdep/dplyr/README.md
@@ -1,245 +1,114 @@
-# Platform
-
-|field |value |
-|:--------|:----------------------------|
-|version |R version 4.0.0 (2020-04-24) |
-|os |macOS Mojave 10.14.6 |
-|system |x86_64, darwin17.0 |
-|ui |X11 |
-|language |(EN) |
-|collate |en_US.UTF-8 |
-|ctype |en_US.UTF-8 |
-|tz |Europe/Paris |
-|date |2020-05-28 |
-
-# Dependencies
-
-|package |old |new |Δ |
-|:----------|:--------|:-----------|:--|
-|dplyr |0.8.5 |0.8.99.9003 |* |
-|assertthat |0.2.1 |0.2.1 | |
-|BH |1.72.0-3 |NA |* |
-|cli |2.0.2 |2.0.2 | |
-|crayon |1.3.4 |1.3.4 | |
-|digest |0.6.25 |0.6.25 | |
-|ellipsis |0.3.1 |0.3.1 | |
-|fansi |0.4.1 |0.4.1 | |
-|generics |NA |0.0.2 |* |
-|glue |1.4.1 |1.4.1 | |
-|lifecycle |0.2.0 |0.2.0 | |
-|magrittr |1.5 |1.5 | |
-|pillar |1.4.4 |1.4.4 | |
-|pkgconfig |2.0.3 |2.0.3 | |
-|plogr |0.2.0 |NA |* |
-|purrr |0.3.4 |0.3.4 | |
-|R6 |2.4.1 |2.4.1 | |
-|Rcpp |1.0.4.6 |NA |* |
-|rlang |0.4.6 |0.4.6 | |
-|tibble |3.0.1 |3.0.1 | |
-|tidyselect |1.1.0 |1.1.0 | |
-|utf8 |1.1.4 |1.1.4 | |
-|vctrs |0.3.0 |0.3.0 | |
-
# Revdeps
-## Failed to check (127)
+## Failed to check (15)
-|package |version |error |warning |note |
-|:--------------------------------------------------|:--------|:---------|:-------|:------|
-|ACDm |1.0.4 |1 | | |
-|ADMMsigma |2.1 |1 | | |
-|airGR |1.4.3.65 |1 | | |
-|arrow |0.17.0 |1 | | |
-|BAS |1.5.5 |1 | | |
-|bayesammi |0.1.0 |1 | | |
-|BayesPostEst |0.2.0 |1 | | |
-|BgeeDB |2.14.0 |1 | | |
-|bigsnpr |1.3.0 |1 | | |
-|bioCancer |? | | | |
-|BivRec |1.2.0 |1 | | |
-|bkmr |0.2.0 |1 | | |
-|BMTME |1.0.12 |1 | | |
-|BradleyTerryScalable |0.1.0 |1 | | |
-|brunnermunzel |1.4.1 |1 | | |
-|bsam |1.1.2 |1 | | |
-|BUSpaRse |1.1.5 |1 | |1 |
-|carat |1.0 |1 | | |
-|CaseBasedReasoning |0.1 |1 | | |
-|CB2 |1.3.1 |1 | | |
-|ChIPseeker |? | | | |
-|CINdex |? | | | |
-|circumplex |0.3.6 |1 | | |
-|clustermq |0.8.9 |1 | |1 |
-|clusterProfiler |? | | | |
-|CNPBayes |1.13.5 |1 | | |
-|colorednoise |1.0.5 |1 | | |
-|COMPASS |1.26.0 |1 | |1 |
-|concurve |2.5.0 |1 | | |
-|corrcoverage |1.2.1 |1 | | |
-|Countr |3.5.4 |1 | | |
-|cpr |0.2.3 |1 | | |
-|crawl |2.2.1 |1 | | |
-|CytoML |2.0.0 |1 | | |
-|dann |0.2.0 |1 | | |
-|DAPAR |1.20.1 |1 | | |
-|DataVisualizations |1.1.11 |1 | |1 |
-|DEP |1.10.0 |1 | | |
-|DepthProc |2.1.3 |1 | | |
-|dexter |1.0.7 |1 | | |
-|DiffBind |2.16.0 |1 | |5 |
-|dodgr |0.2.7 |1 | | |
-|downscaledl |1.0 |1 | | |
-|dscore |1.2.0 |1 | | |
-|dtwclust |5.5.6 |1 | | |
-|[DuoClustering2018](failures.md#duoclustering2018) |1.6.0 |-1 __+1__ | |__+1__ |
-|dynfrail |0.5.2 |1 | | |
-|ENCODExplorer |2.14.0 |1 | |1 |
-|exuber |0.4.0 |1 | |1 |
-|fable |0.2.0 |1 | | |
-|fastLink |0.6.0 |1 | | |
-|flowWorkspace |4.0.0 |1 | | |
-|fourierin |0.2.4 |1 | | |
-|gap |1.2.2 |1 | |1 |
-|GAPGOM |? | | | |
-|gastempt |0.5.0 |1 | | |
-|GenomicMating |2.0 |1 | | |
-|geodiv |0.1.1 |1 | | |
-|GEOquery |2.56.0 |1 | |4 |
-|gespeR |1.20.0 |1 | | |
-|goldi |1.0.1 |1 | | |
-|graphicalVAR |0.2.3 |1 | | |
-|grasp2db |1.1.0 |1 |3 |4 |
-|heatwaveR |0.4.2 |1 | |1 |
-|ideal |1.12.0 |1 | |1 |
-|idefix |0.4.3 |1 | | |
-|infercnv |1.4.0 |1 | | |
-|iRF |2.0.0 |1 | | |
-|joineRML |0.4.4 |1 | | |
-|lpirfs |0.1.7 |1 | |1 |
-|maEndToEnd |? | | | |
-|metagene2 |1.4.0 |1 | | |
-|mfbvar |0.5.3 |1 | | |
-|miceFast |0.5.1 |1 | | |
-|MixMatrix |0.2.4 |1 | | |
-|momentuHMM |1.5.1 |1 | | |
-|MonetDBLite |0.6.0 |1 | |1 |
-|morse |3.2.5 |1 | | |
-|mrgsolve |0.10.1 |1 | | |
-|NobBS |0.1.0 |1 | | |
-|NoRCE |? | | | |
-|openair |2.7-2 |1 | | |
-|partition |0.1.1 |1 | | |
-|pccc |1.0.3 |1 | | |
-|phase1PRMD |1.0.2 |1 | | |
-|phenofit |0.2.7 |1 | | |
-|phyr |1.0.2 |1 | |1 |
-|PLNmodels |0.9.5 |1 | | |
-|pomp |2.8 |1 | | |
-|PPforest |0.1.1 |1 | | |
-|pRoloc |1.28.0 |1 | | |
-|psychmeta |2.3.8 |1 | | |
-|psychonetrics |0.7.1 |1 | | |
-|qgraph |1.6.5 |1 | |1 |
-|quanteda |2.0.1 |1 | | |
-|quokar |0.1.0 |1 | | |
-|qwraps2 |0.4.2 |1 | | |
-|[Rariant](failures.md#rariant) |1.24.0 |__+1__ |-1 |-3 |
-|rbridge |1.0.2 |1 | | |
-|registr |1.0.0 |1 | | |
-|resautonet |1.0 |1 | | |
-|rnaseqGene |1.12.0 |1 | |1 |
-|RSSL |0.9.1 |1 | | |
-|RxODE |0.9.2-0 |1 | |1 |
-|sarima |0.8.2 |1 | | |
-|scanstatistics |1.0.1 |1 | | |
-|scfind |1.9.0 |1 | | |
-|scGPS |? | | | |
-|scmap |1.10.0 |1 | | |
-|[SCORPIUS](failures.md#scorpius) |1.0.6 |__+1__ | | |
-|SCPME |1.0 |1 | | |
-|selectKSigs |1.0.0 |1 | | |
-|SimBIID |0.1.4 |1 | | |
-|simts |0.1.1 |1 | | |
-|SpaCCr |0.1.0 |1 | | |
-|stcos |0.2.1 |1 | | |
-|TCGAbiolinks |2.16.0 |1 | | |
-|TCGAbiolinksGUI |1.14.0 |1 | | |
-|telefit |1.0.3 |1 | | |
-|TestDimorph |0.3.1 |1 | | |
-|tidybulk |? | | | |
-|ToxicoGx |0.1.1 |1 | | |
-|VarSelLCM |2.1.3 |1 | | |
-|vlad |0.2.0 |1 | | |
-|walker |0.3.1-1 |1 | | |
-|weibulltools |1.0.1 |1 | | |
-|XBSeq |1.20.0 |1 | |3 |
+|package |version |error |warning |note |
+|:----------------|:-------|:-----|:-------|:----|
+|butcher |? | | | |
+|CausalImpact |? | | | |
+|CB2 |? | | | |
+|cbar |? | | | |
+|diceR |? | | | |
+|fingertipscharts |0.0.10 |1 | | |
+|gastempt |0.5.0 |1 | | |
+|MarketMatching |? | | | |
+|MonetDB.R |? | | | |
+|nesRdata |0.3.1 |1 | | |
+|rdflib |0.2.3 |1 | | |
+|SimDesign |? | | | |
+|trackdf |? | | | |
+|trackr |? | | | |
+|wrswoR |? | | | |
-## New problems (64)
+## New problems (87)
-|package |version |error |warning |note |
-|:------------------------------------------------|:-------|:--------|:-------|:----|
-|[AlphaBeta](problems.md#alphabeta) |1.2.0 |__+1__ | |2 |
-|[amt](problems.md#amt) |0.1.1 |__+1__ | | |
-|[BMSC](problems.md#bmsc) |0.2.0 |__+1__ | |1 |
-|[cattonum](problems.md#cattonum) |0.0.4 |__+1__ | | |
-|[circRNAprofiler](problems.md#circrnaprofiler) |1.2.0 |1 __+1__ | |1 |
-|[CollapseLevels](problems.md#collapselevels) |0.2.0 |__+1__ | | |
-|[cvms](problems.md#cvms) |1.0.1 |__+1__ | | |
-|[ddpcr](problems.md#ddpcr) |1.14 | |__+1__ | |
-|[DEGreport](problems.md#degreport) |1.24.0 |__+2__ | |3 |
-|[disk.frame](problems.md#diskframe) |0.3.5 |__+1__ |__+1__ | |
-|[DLMtool](problems.md#dlmtool) |5.4.3 |__+1__ | |1 |
-|[docxtools](problems.md#docxtools) |0.2.1 |__+2__ | | |
-|[driftR](problems.md#driftr) |1.1.0 |__+1__ | | |
-|[easyr](problems.md#easyr) |0.3-1 |__+1__ | | |
-|[eda4treeR](problems.md#eda4treer) |0.2.0 |__+1__ | |1 |
-|[egor](problems.md#egor) |0.20.03 | |__+1__ | |
-|[episheet](problems.md#episheet) |0.4.0 |__+2__ | | |
-|[expstudies](problems.md#expstudies) |0.0.5 |__+1__ | | |
-|[fabletools](problems.md#fabletools) |0.1.3 |__+2__ | | |
-|[fingertipscharts](problems.md#fingertipscharts) |0.0.10 |__+2__ | |1 |
-|[foieGras](problems.md#foiegras) |0.4.0 |__+2__ | |1 |
-|[geometr](problems.md#geometr) |0.2.4 |__+1__ | |1 |
-|[geomnet](problems.md#geomnet) |0.2.0 |__+1__ | | |
-|[getTBinR](problems.md#gettbinr) |0.7.0 |__+1__ | | |
-|[ggedit](problems.md#ggedit) |0.3.0 |__+1__ | |1 |
-|[gratia](problems.md#gratia) |0.3.1 |__+1__ | | |
-|[HaDeX](problems.md#hadex) |1.1 |__+2__ | |1 |
-|[healthcareai](problems.md#healthcareai) |2.4.0 |__+1__ | | |
-|[idmodelr](problems.md#idmodelr) |0.3.1 |__+1__ | | |
-|[isomiRs](problems.md#isomirs) |1.16.1 |1 __+1__ | |3 |
-|[lans2r](problems.md#lans2r) |1.0.5 |__+1__ | | |
-|[LexisNexisTools](problems.md#lexisnexistools) |0.3.0 |__+1__ | | |
-|[mmetrics](problems.md#mmetrics) |0.3.0 |__+1__ | |1 |
-|[MSstatsTMT](problems.md#msstatstmt) |1.6.1 |__+2__ | | |
-|[neuropsychology](problems.md#neuropsychology) |0.5.0 |__+1__ | |1 |
-|[ngsReports](problems.md#ngsreports) |1.4.1 |__+1__ | |1 |
-|[opentripplanner](problems.md#opentripplanner) |0.2.1.0 |__+1__ | |1 |
-|[pammtools](problems.md#pammtools) |0.2.3 | |__+1__ | |
-|[PAST](problems.md#past) |1.4.1 |__+1__ |2 |1 |
-|[photosynthesis](problems.md#photosynthesis) |1.0.0 |__+1__ | |1 |
-|[pmdplyr](problems.md#pmdplyr) |0.3.1.1 |__+2__ |__+1__ | |
-|[rabhit](problems.md#rabhit) |0.1.4 |__+1__ | | |
-|[ratPASTA](problems.md#ratpasta) |0.1.0 |__+1__ | |1 |
-|[RCMIP5](problems.md#rcmip5) |1.2.0 |__+1__ | | |
-|[rsample](problems.md#rsample) |0.0.6 |__+1__ | | |
-|[saotd](problems.md#saotd) |0.2.0 |__+1__ | |1 |
-|[sergeant](problems.md#sergeant) |0.5.2 | |__+1__ | |
-|[sevenbridges](problems.md#sevenbridges) |1.18.0 |__+1__ | |1 |
-|[simglm](problems.md#simglm) |0.7.4 |__+1__ | | |
-|[SIRItoGTFS](problems.md#siritogtfs) |0.2.4 |__+1__ | | |
-|[skynet](problems.md#skynet) |1.3.0 |__+1__ | |1 |
-|[strapgod](problems.md#strapgod) |0.0.4 |__+1__ | | |
-|[StratigrapheR](problems.md#stratigrapher) |1.0.1 |__+1__ | | |
-|[tidyjson](problems.md#tidyjson) |0.3.0 |__+2__ | | |
-|[tidyRSS](problems.md#tidyrss) |2.0.1 |__+1__ | | |
-|[tidystats](problems.md#tidystats) |0.4 |__+1__ | |2 |
-|[tidystopwords](problems.md#tidystopwords) |0.9.0 |__+1__ | |1 |
-|[timeOmics](problems.md#timeomics) |1.0.0 |__+2__ | |3 |
-|[TPP](problems.md#tpp) |3.16.0 |__+2__ | |3 |
-|[tree.bins](problems.md#treebins) |0.1.1 |__+1__ | |1 |
-|[treeplyr](problems.md#treeplyr) |0.1.7 |__+1__ | | |
-|[vcfR](problems.md#vcfr) |1.10.0 |__+2__ | | |
-|[vpc](problems.md#vpc) |1.2.0 |__+2__ | | |
-|[yamlet](problems.md#yamlet) |0.4.7 | |__+1__ |-1 |
+|package |version |error |warning |note |
+|:--------------------------------------------------|:-------|:------|:-------|:----|
+|[amt](problems.md#amt) |0.1.1 |__+1__ | | |
+|[anomalize](problems.md#anomalize) |0.2.0 |__+2__ | | |
+|[applicable](problems.md#applicable) |0.0.1 |__+1__ | | |
+|[bdl](problems.md#bdl) |1.0.2 |__+1__ | | |
+|[cattonum](problems.md#cattonum) |0.0.4 |__+1__ | | |
+|[codebook](problems.md#codebook) |0.8.2 |__+1__ | |2 |
+|[collapse](problems.md#collapse) |1.2.1 |__+1__ | |1 |
+|[CollapseLevels](problems.md#collapselevels) |0.2.0 |__+1__ | | |
+|[correlationfunnel](problems.md#correlationfunnel) |0.1.0 |__+1__ | |2 |
+|[cutpointr](problems.md#cutpointr) |1.0.2 |__+1__ | | |
+|[ddpcr](problems.md#ddpcr) |1.14 | |__+1__ | |
+|[disk.frame](problems.md#diskframe) |0.3.5 |__+1__ |__+1__ | |
+|[distrr](problems.md#distrr) |0.0.5 |__+1__ | | |
+|[docxtools](problems.md#docxtools) |0.2.1 |__+2__ | | |
+|[driftR](problems.md#driftr) |1.1.0 |__+1__ | | |
+|[easyr](problems.md#easyr) |0.3-1 |__+1__ | | |
+|[eda4treeR](problems.md#eda4treer) |0.2.0 |__+1__ | |1 |
+|[egor](problems.md#egor) |0.20.03 | |__+1__ | |
+|[episheet](problems.md#episheet) |0.4.0 |__+2__ | | |
+|[europepmc](problems.md#europepmc) |0.3 |__+1__ | | |
+|[expstudies](problems.md#expstudies) |0.0.5 |__+1__ | | |
+|[fable](problems.md#fable) |0.2.0 |__+2__ | | |
+|[fabletools](problems.md#fabletools) |0.1.3 |__+2__ | | |
+|[finalfit](problems.md#finalfit) |1.0.1 |__+1__ | | |
+|[foieGras](problems.md#foiegras) |0.4.0 |__+2__ | |1 |
+|[geometr](problems.md#geometr) |0.2.4 |__+1__ | |1 |
+|[getTBinR](problems.md#gettbinr) |0.7.0 |__+1__ | | |
+|[ggedit](problems.md#ggedit) |0.3.0 |__+1__ | |1 |
+|[gratia](problems.md#gratia) |0.3.1 |__+1__ | | |
+|[groupedstats](problems.md#groupedstats) |1.0.0 |__+1__ | | |
+|[HaDeX](problems.md#hadex) |1.1 |__+2__ | |1 |
+|[healthcareai](problems.md#healthcareai) |2.4.0 |__+1__ | | |
+|[idmodelr](problems.md#idmodelr) |0.3.1 |__+1__ | | |
+|[immunarch](problems.md#immunarch) |0.6.4 |__+1__ | |2 |
+|[IncucyteDRC](problems.md#incucytedrc) |0.5.4 |__+1__ | | |
+|[infer](problems.md#infer) |0.5.1 |__+1__ | |1 |
+|[iRF](problems.md#irf) |2.0.0 | |__+1__ | |
+|[jpndistrict](problems.md#jpndistrict) |0.3.6 |__+1__ | |1 |
+|[keyATM](problems.md#keyatm) |0.2.0 |__+1__ | |2 |
+|[kiwisR](problems.md#kiwisr) |0.1.8 |__+1__ | | |
+|[lpirfs](problems.md#lpirfs) |0.1.7 |__+1__ | |1 |
+|[mason](problems.md#mason) |0.2.6 |__+1__ | |1 |
+|[mcp](problems.md#mcp) |0.2.0 |__+1__ | |1 |
+|[metabolighteR](problems.md#metabolighter) |0.1.0 |__+2__ | | |
+|[metamicrobiomeR](problems.md#metamicrobiomer) |1.1 |__+1__ | |1 |
+|[mmetrics](problems.md#mmetrics) |0.3.0 |__+1__ | |1 |
+|[neuropsychology](problems.md#neuropsychology) |0.5.0 |__+1__ | |1 |
+|[opentripplanner](problems.md#opentripplanner) |0.2.1.0 |__+1__ | |1 |
+|[pammtools](problems.md#pammtools) |0.2.3 | |__+1__ | |
+|[panelr](problems.md#panelr) |0.7.2 |__+2__ | |1 |
+|[photosynthesis](problems.md#photosynthesis) |1.0.0 |__+1__ | |1 |
+|[pmdplyr](problems.md#pmdplyr) |0.3.1.1 |__+2__ |__+1__ | |
+|[ptstem](problems.md#ptstem) |0.0.7 |__+1__ | |1 |
+|[purrrogress](problems.md#purrrogress) |0.1.1 |__+1__ | |1 |
+|[rabhit](problems.md#rabhit) |0.1.4 |__+1__ | | |
+|[radiant.data](problems.md#radiantdata) |1.3.4 |__+1__ | | |
+|[rainette](problems.md#rainette) |0.1.1 |__+1__ | | |
+|[ratPASTA](problems.md#ratpasta) |0.1.0 |__+1__ | |1 |
+|[RCMIP5](problems.md#rcmip5) |1.2.0 |__+1__ | | |
+|[rcv](problems.md#rcv) |0.2.1 |__+1__ | |1 |
+|[RNeXML](problems.md#rnexml) |2.4.4 |__+1__ | | |
+|[rsample](problems.md#rsample) |0.0.6 |__+1__ | | |
+|[RTL](problems.md#rtl) |0.1.1 |__+1__ | |2 |
+|[rules](problems.md#rules) |0.0.1 |__+1__ | | |
+|[saotd](problems.md#saotd) |0.2.0 |__+1__ | |1 |
+|[sergeant](problems.md#sergeant) |0.5.2 | |__+1__ | |
+|[sf](problems.md#sf) |0.9-3 |__+2__ | |1 |
+|[simglm](problems.md#simglm) |0.7.4 |__+1__ | | |
+|[simplevis](problems.md#simplevis) |1.1.3 |__+1__ | |1 |
+|[SIRItoGTFS](problems.md#siritogtfs) |0.2.4 |__+1__ | | |
+|[sistec](problems.md#sistec) |0.0.2 |__+1__ | | |
+|[skynet](problems.md#skynet) |1.3.0 |__+1__ | |1 |
+|[strapgod](problems.md#strapgod) |0.0.4 |__+1__ | | |
+|[StratigrapheR](problems.md#stratigrapher) |1.0.1 |__+1__ | | |
+|[sugarbag](problems.md#sugarbag) |0.1.2 |__+1__ | |1 |
+|[tidyjson](problems.md#tidyjson) |0.3.0 |__+2__ | | |
+|[tidyRSS](problems.md#tidyrss) |2.0.1 |__+1__ | | |
+|[tidystats](problems.md#tidystats) |0.4 |__+1__ | |2 |
+|[tidystopwords](problems.md#tidystopwords) |0.9.0 |__+1__ | |1 |
+|[timetk](problems.md#timetk) |1.0.0 |__+1__ | |2 |
+|[tree.bins](problems.md#treebins) |0.1.1 |__+1__ | |1 |
+|[treeplyr](problems.md#treeplyr) |0.1.7 |__+1__ | | |
+|[tsibble](problems.md#tsibble) |0.8.6 |__+2__ | |1 |
+|[vcfR](problems.md#vcfr) |1.10.0 |__+2__ | |1 |
+|[vctrs](problems.md#vctrs) |0.3.0 |__+1__ | | |
+|[vpc](problems.md#vpc) |1.2.0 |__+2__ | | |
+|[yamlet](problems.md#yamlet) |0.4.7 | |__+1__ |-1 |
diff --git a/revdep/dplyr/failures.md b/revdep/dplyr/failures.md
index 06f156d398..f211a9ca39 100644
--- a/revdep/dplyr/failures.md
+++ b/revdep/dplyr/failures.md
@@ -1,510 +1,375 @@
-# ACDm
+# butcher
-* Version: 1.0.4
-* Source code: https://github.com/cran/ACDm
-* Date/Publication: 2016-07-16 12:19:03
-* Number of recursive dependencies: 83
+* Version: 0.1.2
+* Source code: https://github.com/cran/butcher
+* URL: https://tidymodels.github.io/butcher, https://github.com/tidymodels/butcher
+* BugReports: https://github.com/tidymodels/butcher/issues
+* Date/Publication: 2020-01-23 22:40:02 UTC
+* Number of recursive dependencies: 181
-Run `revdep_details(,"ACDm")` for more info
+Run `cloud_details(, "butcher")` for more info
-## In both
-
-* checking whether package ‘ACDm’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ACDm/new/ACDm.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘ACDm’ ...
-** package ‘ACDm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c computeDurations.c -o computeDurations.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getLL.c -o getLL.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getScore.c -o getScore.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getdudtheta.c -o getdudtheta.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ABACD.c -o sim_ABACD.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ACDCALL.c -o sim_ACDCALL.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ACDSpline.c -o sim_ACDSpline.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_AMACD.c -o sim_AMACD.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_LACD1.c -o sim_LACD1.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_LACD2.c -o sim_LACD2.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ACDm.so computeDurations.o getLL.o getScore.o getdudtheta.o sim_ABACD.o sim_ACDCALL.o sim_ACDSpline.o sim_AMACD.o sim_LACD1.o sim_LACD2.o -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [ACDm.so] Error 1
-ERROR: compilation failed for package ‘ACDm’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ACDm/new/ACDm.Rcheck/ACDm’
+* using log directory ‘/tmp/workdir/butcher/new/butcher.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘butcher/DESCRIPTION’ ... OK
+* this is package ‘butcher’ version ‘0.1.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package suggested but not available: ‘NMF’
-```
-### CRAN
+The suggested packages are required for a complete check.
+Checking can be attempted without them by setting the environment
+variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
-```
-* installing *source* package ‘ACDm’ ...
-** package ‘ACDm’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c computeDurations.c -o computeDurations.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getLL.c -o getLL.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getScore.c -o getScore.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getdudtheta.c -o getdudtheta.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ABACD.c -o sim_ABACD.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ACDCALL.c -o sim_ACDCALL.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ACDSpline.c -o sim_ACDSpline.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_AMACD.c -o sim_AMACD.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_LACD1.c -o sim_LACD1.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_LACD2.c -o sim_LACD2.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ACDm.so computeDurations.o getLL.o getScore.o getdudtheta.o sim_ABACD.o sim_ACDCALL.o sim_ACDSpline.o sim_AMACD.o sim_LACD1.o sim_LACD2.o -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [ACDm.so] Error 1
-ERROR: compilation failed for package ‘ACDm’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ACDm/old/ACDm.Rcheck/ACDm’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-```
-# ADMMsigma
-
-* Version: 2.1
-* Source code: https://github.com/cran/ADMMsigma
-* URL: https://github.com/MGallow/ADMMsigma
-* BugReports: https://github.com/MGallow/ADMMsigma/issues
-* Date/Publication: 2018-08-02 17:10:02 UTC
-* Number of recursive dependencies: 83
-Run `revdep_details(,"ADMMsigma")` for more info
-
-## In both
+```
+### CRAN
-* checking whether package ‘ADMMsigma’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ADMMsigma/new/ADMMsigma.Rcheck/00install.out’ for details.
- ```
+```
+* using log directory ‘/tmp/workdir/butcher/old/butcher.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘butcher/DESCRIPTION’ ... OK
+* this is package ‘butcher’ version ‘0.1.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package suggested but not available: ‘NMF’
+
+The suggested packages are required for a complete check.
+Checking can be attempted without them by setting the environment
+variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-## Installation
-### Devel
-```
-* installing *source* package ‘ADMMsigma’ ...
-** package ‘ADMMsigma’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CV.cpp -o CV.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CVP.cpp -o CVP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c Sigma.cpp -o Sigma.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c soft.cpp -o soft.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ADMMsigma.so CV.o CVP.o RcppExports.o Sigma.o soft.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [ADMMsigma.so] Error 1
-ERROR: compilation failed for package ‘ADMMsigma’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ADMMsigma/new/ADMMsigma.Rcheck/ADMMsigma’
-```
-### CRAN
-```
-* installing *source* package ‘ADMMsigma’ ...
-** package ‘ADMMsigma’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CV.cpp -o CV.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CVP.cpp -o CVP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c Sigma.cpp -o Sigma.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c soft.cpp -o soft.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ADMMsigma.so CV.o CVP.o RcppExports.o Sigma.o soft.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [ADMMsigma.so] Error 1
-ERROR: compilation failed for package ‘ADMMsigma’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ADMMsigma/old/ADMMsigma.Rcheck/ADMMsigma’
```
-# airGR
+# CausalImpact
-* Version: 1.4.3.65
-* Source code: https://github.com/cran/airGR
-* URL: https://hydrogr.github.io/airGR/
-* BugReports: https://gitlab.irstea.fr/HYCAR-Hydro/airgr/issues
-* Date/Publication: 2020-02-28 16:20:06 UTC
-* Number of recursive dependencies: 79
+* Version: 1.2.4
+* Source code: https://github.com/cran/CausalImpact
+* URL: https://google.github.io/CausalImpact/
+* Date/Publication: 2020-01-08 23:02:47 UTC
+* Number of recursive dependencies: 64
-Run `revdep_details(,"airGR")` for more info
+Run `cloud_details(, "CausalImpact")` for more info
-## In both
-
-* checking whether package ‘airGR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/airGR/new/airGR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘airGR’ ...
-** package ‘airGR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c airGR.c -o airGR.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_CEMANEIGE.f90 -o frun_CEMANEIGE.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR1A.f90 -o frun_GR1A.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR2M.f90 -o frun_GR2M.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR4H.f90 -o frun_GR4H.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR4J.f90 -o frun_GR4J.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR5H.f90 -o frun_GR5H.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR5J.f90 -o frun_GR5J.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR6J.f90 -o frun_GR6J.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c utils_D.f90 -o utils_D.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c utils_H.f90 -o utils_H.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o airGR.so airGR.o frun_CEMANEIGE.o frun_GR1A.o frun_GR2M.o frun_GR4H.o frun_GR4J.o frun_GR5H.o frun_GR5J.o frun_GR6J.o utils_D.o utils_H.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [airGR.so] Error 1
-ERROR: compilation failed for package ‘airGR’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/airGR/new/airGR.Rcheck/airGR’
+* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
+* this is package ‘CausalImpact’ version ‘1.2.4’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'bsts', 'Boom'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
```
### CRAN
```
-* installing *source* package ‘airGR’ ...
-** package ‘airGR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c airGR.c -o airGR.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_CEMANEIGE.f90 -o frun_CEMANEIGE.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR1A.f90 -o frun_GR1A.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR2M.f90 -o frun_GR2M.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR4H.f90 -o frun_GR4H.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR4J.f90 -o frun_GR4J.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR5H.f90 -o frun_GR5H.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR5J.f90 -o frun_GR5J.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR6J.f90 -o frun_GR6J.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c utils_D.f90 -o utils_D.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c utils_H.f90 -o utils_H.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o airGR.so airGR.o frun_CEMANEIGE.o frun_GR1A.o frun_GR2M.o frun_GR4H.o frun_GR4J.o frun_GR5H.o frun_GR5J.o frun_GR6J.o utils_D.o utils_H.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [airGR.so] Error 1
-ERROR: compilation failed for package ‘airGR’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/airGR/old/airGR.Rcheck/airGR’
+* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
+* this is package ‘CausalImpact’ version ‘1.2.4’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'bsts', 'Boom'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
```
-# arrow
+# CB2
-* Version: 0.17.0
-* Source code: https://github.com/cran/arrow
-* URL: https://github.com/apache/arrow/, https://arrow.apache.org/docs/r
-* BugReports: https://issues.apache.org/jira/projects/ARROW/issues
-* Date/Publication: 2020-04-21 18:10:02 UTC
-* Number of recursive dependencies: 58
+* Version: 1.3.3
+* Source code: https://github.com/cran/CB2
+* Date/Publication: 2020-05-26 11:00:21 UTC
+* Number of recursive dependencies: 96
-Run `revdep_details(,"arrow")` for more info
+Run `cloud_details(, "CB2")` for more info
-## In both
-
-* checking whether package ‘arrow’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/arrow/new/arrow.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘arrow’ ...
-** package ‘arrow’ successfully unpacked and MD5 sums checked
-** using staged installation
-*** Generating code with data-raw/codegen.R
-Fatal error: cannot open file 'data-raw/codegen.R': No such file or directory
-*** Arrow C++ libraries found via pkg-config
-PKG_CFLAGS=-DNDEBUG -I/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/include -DARROW_R_WITH_ARROW
-PKG_LIBS=-L/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/lib -larrow_dataset -lparquet -larrow
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -I/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/include -DARROW_R_WITH_ARROW -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/arrow/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c array.cpp -o array.o
-In file included from array.cpp:18:
-././arrow_types.h:200:10: fatal error: 'arrow/c/bridge.h' file not found
-#include
- ^~~~~~~~~~~~~~~~~~
-1 error generated.
-make: *** [array.o] Error 1
-ERROR: compilation failed for package ‘arrow’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/arrow/new/arrow.Rcheck/arrow’
+* using log directory ‘/tmp/workdir/CB2/new/CB2.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘CB2/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘CB2’ version ‘1.3.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘metap’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
```
### CRAN
```
-* installing *source* package ‘arrow’ ...
-** package ‘arrow’ successfully unpacked and MD5 sums checked
-** using staged installation
-*** Generating code with data-raw/codegen.R
-Fatal error: cannot open file 'data-raw/codegen.R': No such file or directory
-*** Arrow C++ libraries found via pkg-config
-PKG_CFLAGS=-DNDEBUG -I/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/include -DARROW_R_WITH_ARROW
-PKG_LIBS=-L/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/lib -larrow_dataset -lparquet -larrow
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -I/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/include -DARROW_R_WITH_ARROW -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c array.cpp -o array.o
-In file included from array.cpp:18:
-././arrow_types.h:200:10: fatal error: 'arrow/c/bridge.h' file not found
-#include
- ^~~~~~~~~~~~~~~~~~
-1 error generated.
-make: *** [array.o] Error 1
-ERROR: compilation failed for package ‘arrow’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/arrow/old/arrow.Rcheck/arrow’
+* using log directory ‘/tmp/workdir/CB2/old/CB2.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘CB2/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘CB2’ version ‘1.3.3’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘metap’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
```
-# BAS
+# cbar
-* Version: 1.5.5
-* Source code: https://github.com/cran/BAS
-* URL: https://www.r-project.org, https://github.com/merliseclyde/BAS
-* BugReports: https://github.com/merliseclyde/BAS/issues
-* Date/Publication: 2020-01-24 22:50:14 UTC
-* Number of recursive dependencies: 88
+* Version: 0.1.3
+* Source code: https://github.com/cran/cbar
+* URL: https://github.com/zedoul/cbar
+* BugReports: https://github.com/zedoul/cbar/issues
+* Date/Publication: 2017-10-24 13:20:22 UTC
+* Number of recursive dependencies: 64
-Run `revdep_details(,"BAS")` for more info
+Run `cloud_details(, "cbar")` for more info
-## In both
-
-* checking whether package ‘BAS’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BAS/new/BAS.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘BAS’ ...
-** package ‘BAS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c E_ZS.c -o E_ZS.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ZS_approx_full_np.c -o ZS_approx_full_np.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ZS_approx_null_np.c -o ZS_approx_null_np.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bayesglm.c -o bayesglm.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bayesreg.c -o bayesreg.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c betapriorfamily.c -o betapriorfamily.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c cch.c -o cch.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c const.c -o const.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c family.c -o family.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gamma.c -o gamma.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_deterministic.c -o glm_deterministic.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_fit.c -o glm_fit.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_lpy.c -o glm_lpy.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_mcmc.c -o glm_mcmc.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_mcmcbas.c -o glm_mcmcbas.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_sampleworep.c -o glm_sampleworep.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hg_approx_null_np.c -o hg_approx_null_np.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hyp2f1.c -o hyp2f1.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hyperg.c -o hyperg.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hypergeoF.c -o hypergeoF.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hypergeometric1F1.c -o hypergeometric1F1.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_deterministic.c -o lm_deterministic.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_mcmc.c -o lm_mcmc.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_mcmcbas.c -o lm_mcmcbas.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_sampleworep.c -o lm_sampleworep.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mem.c -o mem.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c model_probabilities.c -o model_probabilities.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mtherr.c -o mtherr.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c polevl.c -o polevl.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c psi.c -o psi.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c tree_structures.c -o tree_structures.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BAS.so E_ZS.o ZS_approx_full_np.o ZS_approx_null_np.o bayesglm.o bayesreg.o betapriorfamily.o cch.o const.o family.o gamma.o glm_deterministic.o glm_fit.o glm_lpy.o glm_mcmc.o glm_mcmcbas.o glm_sampleworep.o hg_approx_null_np.o hyp2f1.o hyperg.o hypergeoF.o hypergeometric1F1.o init.o lm_deterministic.o lm_mcmc.o lm_mcmcbas.o lm_sampleworep.o mem.o model_probabilities.o mtherr.o polevl.o psi.o tree_structures.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [BAS.so] Error 1
-ERROR: compilation failed for package ‘BAS’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BAS/new/BAS.Rcheck/BAS’
+* using log directory ‘/tmp/workdir/cbar/new/cbar.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘cbar/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘cbar’ version ‘0.1.3’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'Boom', 'bsts'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
```
### CRAN
```
-* installing *source* package ‘BAS’ ...
-** package ‘BAS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c E_ZS.c -o E_ZS.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ZS_approx_full_np.c -o ZS_approx_full_np.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ZS_approx_null_np.c -o ZS_approx_null_np.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bayesglm.c -o bayesglm.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bayesreg.c -o bayesreg.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c betapriorfamily.c -o betapriorfamily.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c cch.c -o cch.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c const.c -o const.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c family.c -o family.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gamma.c -o gamma.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_deterministic.c -o glm_deterministic.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_fit.c -o glm_fit.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_lpy.c -o glm_lpy.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_mcmc.c -o glm_mcmc.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_mcmcbas.c -o glm_mcmcbas.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_sampleworep.c -o glm_sampleworep.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hg_approx_null_np.c -o hg_approx_null_np.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hyp2f1.c -o hyp2f1.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hyperg.c -o hyperg.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hypergeoF.c -o hypergeoF.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hypergeometric1F1.c -o hypergeometric1F1.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_deterministic.c -o lm_deterministic.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_mcmc.c -o lm_mcmc.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_mcmcbas.c -o lm_mcmcbas.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_sampleworep.c -o lm_sampleworep.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mem.c -o mem.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c model_probabilities.c -o model_probabilities.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mtherr.c -o mtherr.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c polevl.c -o polevl.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c psi.c -o psi.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c tree_structures.c -o tree_structures.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BAS.so E_ZS.o ZS_approx_full_np.o ZS_approx_null_np.o bayesglm.o bayesreg.o betapriorfamily.o cch.o const.o family.o gamma.o glm_deterministic.o glm_fit.o glm_lpy.o glm_mcmc.o glm_mcmcbas.o glm_sampleworep.o hg_approx_null_np.o hyp2f1.o hyperg.o hypergeoF.o hypergeometric1F1.o init.o lm_deterministic.o lm_mcmc.o lm_mcmcbas.o lm_sampleworep.o mem.o model_probabilities.o mtherr.o polevl.o psi.o tree_structures.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [BAS.so] Error 1
-ERROR: compilation failed for package ‘BAS’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BAS/old/BAS.Rcheck/BAS’
+* using log directory ‘/tmp/workdir/cbar/old/cbar.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘cbar/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘cbar’ version ‘0.1.3’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'Boom', 'bsts'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
```
-# bayesammi
+# diceR
-* Version: 0.1.0
-* Source code: https://github.com/cran/bayesammi
-* Date/Publication: 2018-04-12 09:03:23 UTC
-* Number of recursive dependencies: 65
+* Version: 0.6.0
+* Source code: https://github.com/cran/diceR
+* URL: https://github.com/AlineTalhouk/diceR, https://alinetalhouk.github.io/diceR
+* BugReports: https://github.com/AlineTalhouk/diceR/issues
+* Date/Publication: 2019-07-25 20:30:02 UTC
+* Number of recursive dependencies: 173
-Run `revdep_details(,"bayesammi")` for more info
+Run `cloud_details(, "diceR")` for more info
-## In both
-
-* checking whether package ‘bayesammi’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bayesammi/new/bayesammi.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘bayesammi’ ...
-** package ‘bayesammi’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so
- Reason: image not found
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘bayesammi’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bayesammi/new/bayesammi.Rcheck/bayesammi’
+* using log directory ‘/tmp/workdir/diceR/new/diceR.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘diceR/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘diceR’ version ‘0.6.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘NMF’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
```
### CRAN
```
-* installing *source* package ‘bayesammi’ ...
-** package ‘bayesammi’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so
- Reason: image not found
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘bayesammi’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bayesammi/old/bayesammi.Rcheck/bayesammi’
+* using log directory ‘/tmp/workdir/diceR/old/diceR.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘diceR/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘diceR’ version ‘0.6.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘NMF’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
```
-# BayesPostEst
+# fingertipscharts
-* Version: 0.2.0
-* Source code: https://github.com/cran/BayesPostEst
-* URL: https://github.com/ShanaScogin/BayesPostEst
-* BugReports: https://github.com/ShanaScogin/BayesPostEst/issues
-* Date/Publication: 2019-12-14 23:10:02 UTC
+* Version: 0.0.10
+* Source code: https://github.com/cran/fingertipscharts
+* BugReports: https://github.com/PublicHealthEngland/fingertipscharts/issues
+* Date/Publication: 2019-10-07 15:00:03 UTC
* Number of recursive dependencies: 142
-Run `revdep_details(,"BayesPostEst")` for more info
+Run `cloud_details(, "fingertipscharts")` for more info
## In both
-* checking whether package ‘BayesPostEst’ can be installed ... ERROR
+* checking whether package ‘fingertipscharts’ can be installed ... ERROR
```
Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BayesPostEst/new/BayesPostEst.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/fingertipscharts/new/fingertipscharts.Rcheck/00install.out’ for details.
```
## Installation
@@ -512,120 +377,64 @@ Run `revdep_details(,"BayesPostEst")` for more info
### Devel
```
-* installing *source* package ‘BayesPostEst’ ...
-** package ‘BayesPostEst’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘fingertipscharts’ ...
+** package ‘fingertipscharts’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_interactive’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_interactive’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_interactive_cat’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_interactive_cat’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_logit’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_logit’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_probit’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_probit’
** inst
** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so
- Reason: image not found
+Error in dyn.load(file, DLLpath = DLLpath, ...) :
+ unable to load shared object '/opt/R/3.6.3/lib/R/library/jqr/libs/jqr.so':
+ libjq.so.1: cannot open shared object file: No such file or directory
+Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
-ERROR: lazy loading failed for package ‘BayesPostEst’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BayesPostEst/new/BayesPostEst.Rcheck/BayesPostEst’
+ERROR: lazy loading failed for package ‘fingertipscharts’
+* removing ‘/tmp/workdir/fingertipscharts/new/fingertipscharts.Rcheck/fingertipscharts’
```
### CRAN
```
-* installing *source* package ‘BayesPostEst’ ...
-** package ‘BayesPostEst’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘fingertipscharts’ ...
+** package ‘fingertipscharts’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_interactive’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_interactive’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_interactive_cat’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_interactive_cat’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_logit’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_logit’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_probit’
-Warning: namespace ‘rjags’ is not available and has been replaced
-by .GlobalEnv when processing object ‘jags_probit’
** inst
** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so
- Reason: image not found
+Error in dyn.load(file, DLLpath = DLLpath, ...) :
+ unable to load shared object '/opt/R/3.6.3/lib/R/library/jqr/libs/jqr.so':
+ libjq.so.1: cannot open shared object file: No such file or directory
+Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
-ERROR: lazy loading failed for package ‘BayesPostEst’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BayesPostEst/old/BayesPostEst.Rcheck/BayesPostEst’
+ERROR: lazy loading failed for package ‘fingertipscharts’
+* removing ‘/tmp/workdir/fingertipscharts/old/fingertipscharts.Rcheck/fingertipscharts’
```
-# BgeeDB
-
-
-
-* Version: 2.14.0
-* Source code: https://github.com/cran/BgeeDB
-* URL: https://github.com/BgeeDB/BgeeDB_R
-* BugReports: https://github.com/BgeeDB/BgeeDB_R/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 73
-
-Run `revdep_details(,"BgeeDB")` for more info
-
-
-
-## In both
-
-* R CMD check timed out
-
-
-# bigsnpr
+# gastempt
-* Version: 1.3.0
-* Source code: https://github.com/cran/bigsnpr
-* URL: https://privefl.github.io/bigsnpr
-* BugReports: https://github.com/privefl/bigsnpr/issues
-* Date/Publication: 2020-03-09 20:00:02 UTC
-* Number of recursive dependencies: 126
+* Version: 0.5.0
+* Source code: https://github.com/cran/gastempt
+* URL: http://github.com/dmenne/gastempt
+* BugReports: http://github.com/dmenne/gastempt/issues
+* Date/Publication: 2020-05-01 10:10:02 UTC
+* Number of recursive dependencies: 88
-Run `revdep_details(,"bigsnpr")` for more info
+Run `cloud_details(, "gastempt")` for more info
## In both
-* checking whether package ‘bigsnpr’ can be installed ... ERROR
+* checking whether package ‘gastempt’ can be installed ... ERROR
```
Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bigsnpr/new/bigsnpr.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/gastempt/new/gastempt.Rcheck/00install.out’ for details.
```
## Installation
@@ -633,80 +442,39 @@ Run `revdep_details(,"bigsnpr")` for more info
### Devel
```
-* installing *source* package ‘bigsnpr’ ...
-** package ‘bigsnpr’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘gastempt’ ...
+** package ‘gastempt’ successfully unpacked and MD5 sums checked
** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c assoc-bgen.cpp -o assoc-bgen.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-acc-xptr.cpp -o bed-acc-xptr.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-fun.cpp -o bed-fun.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-prod-vec.cpp -o bed-prod-vec.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping-bed.cpp -o clumping-bed.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping-cached.cpp -o clumping-cached.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping.cpp -o clumping.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c colstats.cpp -o colstats.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c copy-subset.cpp -o copy-subset.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c corr.cpp -o corr.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c impute-simple.cpp -o impute-simple.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c multLinReg.cpp -o multLinReg.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c read-bgen.cpp -o read-bgen.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c read-plink.cpp -o read-plink.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c write-plink.cpp -o write-plink.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o bigsnpr.so RcppExports.o assoc-bgen.o bed-acc-xptr.o bed-fun.o bed-prod-vec.o clumping-bed.o clumping-cached.o clumping.o colstats.o copy-subset.o corr.o impute-simple.o multLinReg.o read-bgen.o read-plink.o write-plink.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [bigsnpr.so] Error 1
-ERROR: compilation failed for package ‘bigsnpr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bigsnpr/new/bigsnpr.Rcheck/bigsnpr’
+Error in loadNamespace(name) : there is no package called ‘rstantools’
+Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
+Execution halted
+ERROR: configuration failed for package ‘gastempt’
+* removing ‘/tmp/workdir/gastempt/new/gastempt.Rcheck/gastempt’
```
### CRAN
```
-* installing *source* package ‘bigsnpr’ ...
-** package ‘bigsnpr’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘gastempt’ ...
+** package ‘gastempt’ successfully unpacked and MD5 sums checked
** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c assoc-bgen.cpp -o assoc-bgen.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-acc-xptr.cpp -o bed-acc-xptr.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-fun.cpp -o bed-fun.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-prod-vec.cpp -o bed-prod-vec.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping-bed.cpp -o clumping-bed.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping-cached.cpp -o clumping-cached.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping.cpp -o clumping.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c colstats.cpp -o colstats.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c copy-subset.cpp -o copy-subset.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c corr.cpp -o corr.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c impute-simple.cpp -o impute-simple.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c multLinReg.cpp -o multLinReg.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c read-bgen.cpp -o read-bgen.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c read-plink.cpp -o read-plink.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c write-plink.cpp -o write-plink.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o bigsnpr.so RcppExports.o assoc-bgen.o bed-acc-xptr.o bed-fun.o bed-prod-vec.o clumping-bed.o clumping-cached.o clumping.o colstats.o copy-subset.o corr.o impute-simple.o multLinReg.o read-bgen.o read-plink.o write-plink.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [bigsnpr.so] Error 1
-ERROR: compilation failed for package ‘bigsnpr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bigsnpr/old/bigsnpr.Rcheck/bigsnpr’
+Error in loadNamespace(name) : there is no package called ‘rstantools’
+Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
+Execution halted
+ERROR: configuration failed for package ‘gastempt’
+* removing ‘/tmp/workdir/gastempt/old/gastempt.Rcheck/gastempt’
```
-# bioCancer
+# MarketMatching
-* Version:
-* Source code: ???
-* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr
-* BugReports: https://github.com/tidyverse/dplyr/issues
-* Number of recursive dependencies: 0
+* Version: 1.1.2
+* Source code: https://github.com/cran/MarketMatching
+* Date/Publication: 2019-07-03 17:10:03 UTC
+* Number of recursive dependencies: 79
-Run `revdep_details(,"")` for more info
+Run `cloud_details(, "MarketMatching")` for more info
@@ -715,17 +483,25 @@ Run `revdep_details(,"")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/MarketMatching/new/MarketMatching.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘MarketMatching/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘MarketMatching’ version ‘1.1.2’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘bsts’
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-openxlsx 4.1.4 4.1.5 TRUE
-tidyr 1.0.2 1.0.3 TRUE
-writexl 1.2 1.3 TRUE
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
- Binaries will be installed
-installing the source package ‘reactome.db’
@@ -733,197 +509,141 @@ installing the source package ‘reactome.db’
### CRAN
```
+* using log directory ‘/tmp/workdir/MarketMatching/old/MarketMatching.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘MarketMatching/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘MarketMatching’ version ‘1.1.2’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘bsts’
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-openxlsx 4.1.4 4.1.5 TRUE
-tidyr 1.0.2 1.0.3 TRUE
-writexl 1.2 1.3 TRUE
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
- Binaries will be installed
-installing the source package ‘reactome.db’
```
-# BivRec
+# MonetDB.R
-* Version: 1.2.0
-* Source code: https://github.com/cran/BivRec
-* URL: https://github.com/SandraCastroPearson/BivRec
-* BugReports: https://github.com/SandraCastroPearson/BivRec/issues
-* Date/Publication: 2020-01-15 00:20:11 UTC
-* Number of recursive dependencies: 53
+* Version: 1.0.1
+* Source code: https://github.com/cran/MonetDB.R
+* URL: http://www.monetdb.org
+* Date/Publication: 2016-03-21 23:07:24
+* Number of recursive dependencies: 3
-Run `revdep_details(,"BivRec")` for more info
+Run `cloud_details(, "MonetDB.R")` for more info
-## In both
-
-* checking whether package ‘BivRec’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BivRec/new/BivRec.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘BivRec’ ...
-** package ‘BivRec’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BivRec/Rcpp/include' -I/usr/local/include -fPIC -O3 -c BivRec_init.c -o BivRec_init.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bivrecur.f -o bivrecur.o
-f951: Warning: Nonconforming tab character in column 6 of line 82 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs]
-bivrecur.f:83:7:
-
- 83 | + (mark1(i,1).le.u1).and.(mark2(i,1).le.u2))
- | 1
-Warning: Nonconforming tab character at (1) [-Wtabs]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c mprovar.f -o mprovar.o
-f951: Warning: Nonconforming tab character in column 1 of line 49 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 50 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 52 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 55 [-Wtabs]
-mprovar.f:28:40:
-
- 28 | +gmatx, gmaty, l1, l2, expAx, expAy, subsumx, subsumy,
- | 1
-Warning: Unused dummy argument 'expay' at (1) [-Wunused-dummy-argument]
-mprovar.f:27:35:
-
- 27 | subroutine mprovar(n, nparams, xmat, ymat,
- | 1
-Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c onesamp.f -o onesamp.o
-onesamp.f:61:0:
-
- 61 | if((gtime(i,1).eq.udt(k)).and.(cen(i,j).gt.0))
- |
-Warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c xmproee.f -o xmproee.o
-f951: Warning: Nonconforming tab character in column 1 of line 32 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 34 [-Wtabs]
-xmproee.f:20:35:
-
- 20 | subroutine xmproee(n, nparams, di, xmati,
- | 1
-Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c ymproee.f -o ymproee.o
-f951: Warning: Nonconforming tab character in column 1 of line 32 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 34 [-Wtabs]
-ymproee.f:20:35:
-
- 20 | subroutine ymproee(n, nparams, di, xmati, ymati,
- | 1
-Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument]
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BivRec.so BivRec_init.o bivrecur.o mprovar.o onesamp.o xmproee.o ymproee.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [BivRec.so] Error 1
-ERROR: compilation failed for package ‘BivRec’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BivRec/new/BivRec.Rcheck/BivRec’
+
+
+
+
+
```
### CRAN
```
-* installing *source* package ‘BivRec’ ...
-** package ‘BivRec’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c BivRec_init.c -o BivRec_init.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bivrecur.f -o bivrecur.o
-f951: Warning: Nonconforming tab character in column 6 of line 82 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs]
-bivrecur.f:83:7:
-
- 83 | + (mark1(i,1).le.u1).and.(mark2(i,1).le.u2))
- | 1
-Warning: Nonconforming tab character at (1) [-Wtabs]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c mprovar.f -o mprovar.o
-f951: Warning: Nonconforming tab character in column 1 of line 49 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 50 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 52 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 55 [-Wtabs]
-mprovar.f:28:40:
-
- 28 | +gmatx, gmaty, l1, l2, expAx, expAy, subsumx, subsumy,
- | 1
-Warning: Unused dummy argument 'expay' at (1) [-Wunused-dummy-argument]
-mprovar.f:27:35:
-
- 27 | subroutine mprovar(n, nparams, xmat, ymat,
- | 1
-Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c onesamp.f -o onesamp.o
-onesamp.f:61:0:
-
- 61 | if((gtime(i,1).eq.udt(k)).and.(cen(i,j).gt.0))
- |
-Warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c xmproee.f -o xmproee.o
-f951: Warning: Nonconforming tab character in column 1 of line 32 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 34 [-Wtabs]
-xmproee.f:20:35:
-
- 20 | subroutine xmproee(n, nparams, di, xmati,
- | 1
-Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c ymproee.f -o ymproee.o
-f951: Warning: Nonconforming tab character in column 1 of line 32 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 34 [-Wtabs]
-ymproee.f:20:35:
-
- 20 | subroutine ymproee(n, nparams, di, xmati, ymati,
- | 1
-Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument]
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BivRec.so BivRec_init.o bivrecur.o mprovar.o onesamp.o xmproee.o ymproee.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [BivRec.so] Error 1
-ERROR: compilation failed for package ‘BivRec’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BivRec/old/BivRec.Rcheck/BivRec’
+* using log directory ‘/tmp/workdir/MonetDB.R/old/MonetDB.R.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘MonetDB.R/DESCRIPTION’ ... OK
+* this is package ‘MonetDB.R’ version ‘1.0.1’
+* checking package namespace information ... OK
+* checking package dependencies ... NOTE
+Package which this enhances but not available for checking: ‘MonetDBLite’
+* checking if this is a source package ... OK
+* checking if there is a namespace ... OK
+* checking for executable files ... OK
+* checking for hidden files and directories ... OK
+* checking for portable file names ... OK
+* checking for sufficient/correct file permissions ... OK
+* checking whether package ‘MonetDB.R’ can be installed ... OK
+* checking installed package size ... OK
+* checking package directory ... OK
+* checking DESCRIPTION meta-information ... OK
+* checking top-level files ... OK
+* checking for left-over files ... OK
+* checking index information ... OK
+* checking package subdirectories ... OK
+* checking R files for non-ASCII characters ... OK
+* checking R files for syntax errors ... OK
+* checking whether the package can be loaded ... OK
+* checking whether the package can be loaded with stated dependencies ... OK
+* checking whether the package can be unloaded cleanly ... OK
+* checking whether the namespace can be loaded with stated dependencies ... OK
+* checking whether the namespace can be unloaded cleanly ... OK
+* checking loading without being on the library search path ... OK
+* checking dependencies in R code ... NOTE
+Missing or unexported objects:
+ ‘dplyr::base_agg’ ‘dplyr::base_scalar’ ‘dplyr::build_sql’
+ ‘dplyr::is.ident’ ‘dplyr::sql_infix’ ‘dplyr::sql_prefix’
+ ‘dplyr::sql_translator’ ‘dplyr::sql_variant’ ‘dplyr::src_sql’
+ ‘dplyr::tbl_sql’
+* checking S3 generic/method consistency ... OK
+* checking replacement functions ... OK
+* checking foreign function calls ... OK
+* checking R code for possible problems ... OK
+* checking Rd files ... OK
+* checking Rd metadata ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking line endings in C/C++/Fortran sources/headers ... OK
+* checking compiled code ... OK
+* checking examples ... OK
+* DONE
+Status: 2 NOTEs
+
+
+
+
+
```
-# bkmr
+# nesRdata
-* Version: 0.2.0
-* Source code: https://github.com/cran/bkmr
-* URL: https://github.com/jenfb/bkmr
-* BugReports: https://github.com/jenfb/bkmr/issues
-* Date/Publication: 2017-03-24 19:03:01 UTC
-* Number of recursive dependencies: 38
+* Version: 0.3.1
+* Source code: https://github.com/cran/nesRdata
+* URL: https://github.com/jsta/nesRdata
+* BugReports: https://github.com/jsta/nesRdata/issues
+* Date/Publication: 2020-04-30 17:20:02 UTC
+* Number of recursive dependencies: 66
-Run `revdep_details(,"bkmr")` for more info
+Run `cloud_details(, "nesRdata")` for more info
## In both
-* checking whether package ‘bkmr’ can be installed ... ERROR
+* checking whether package ‘nesRdata’ can be installed ... ERROR
```
Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bkmr/new/bkmr.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/00install.out’ for details.
```
## Installation
@@ -931,62 +651,64 @@ Run `revdep_details(,"bkmr")` for more info
### Devel
```
-* installing *source* package ‘bkmr’ ...
-** package ‘bkmr’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘nesRdata’ ...
+** package ‘nesRdata’ successfully unpacked and MD5 sums checked
** using staged installation
** R
+** data
+*** moving datasets to lazyload DB
+** inst
** byte-compile and prepare package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so
- Reason: image not found
+ unable to load shared object '/opt/R/3.6.3/lib/R/library/redland/libs/redland.so':
+ librdf.so.0: cannot open shared object file: No such file or directory
Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
-ERROR: lazy loading failed for package ‘bkmr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bkmr/new/bkmr.Rcheck/bkmr’
+ERROR: lazy loading failed for package ‘nesRdata’
+* removing ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/nesRdata’
```
### CRAN
```
-* installing *source* package ‘bkmr’ ...
-** package ‘bkmr’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘nesRdata’ ...
+** package ‘nesRdata’ successfully unpacked and MD5 sums checked
** using staged installation
** R
+** data
+*** moving datasets to lazyload DB
+** inst
** byte-compile and prepare package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so
- Reason: image not found
+ unable to load shared object '/opt/R/3.6.3/lib/R/library/redland/libs/redland.so':
+ librdf.so.0: cannot open shared object file: No such file or directory
Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
Execution halted
-ERROR: lazy loading failed for package ‘bkmr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bkmr/old/bkmr.Rcheck/bkmr’
+ERROR: lazy loading failed for package ‘nesRdata’
+* removing ‘/tmp/workdir/nesRdata/old/nesRdata.Rcheck/nesRdata’
```
-# BMTME
+# rdflib
-* Version: 1.0.12
-* Source code: https://github.com/cran/BMTME
-* URL: https://github.com/frahik/BMTME
-* BugReports: https://github.com/frahik/BMTME/issues/new
-* Date/Publication: 2019-10-17 22:30:16 UTC
-* Number of recursive dependencies: 61
+* Version: 0.2.3
+* Source code: https://github.com/cran/rdflib
+* URL: https://github.com/ropensci/rdflib
+* BugReports: https://github.com/ropensci/rdflib/issues
+* Date/Publication: 2020-01-10 04:10:02 UTC
+* Number of recursive dependencies: 80
-Run `revdep_details(,"BMTME")` for more info
+Run `cloud_details(, "rdflib")` for more info
## In both
-* checking whether package ‘BMTME’ can be installed ... ERROR
+* checking whether package ‘rdflib’ can be installed ... ERROR
```
Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BMTME/new/BMTME.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details.
```
## Installation
@@ -994,797 +716,202 @@ Run `revdep_details(,"BMTME")` for more info
### Devel
```
-* installing *source* package ‘BMTME’ ...
-** package ‘BMTME’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘rdflib’ ...
+** package ‘rdflib’ successfully unpacked and MD5 sums checked
** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Sample_IW.cpp -o Sample_IW.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BMTME.so RcppExports.o Sample_IW.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [BMTME.so] Error 1
-ERROR: compilation failed for package ‘BMTME’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BMTME/new/BMTME.Rcheck/BMTME’
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+Error in dyn.load(file, DLLpath = DLLpath, ...) :
+ unable to load shared object '/opt/R/3.6.3/lib/R/library/redland/libs/redland.so':
+ librdf.so.0: cannot open shared object file: No such file or directory
+Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
+Execution halted
+ERROR: lazy loading failed for package ‘rdflib’
+* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’
```
### CRAN
```
-* installing *source* package ‘BMTME’ ...
-** package ‘BMTME’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘rdflib’ ...
+** package ‘rdflib’ successfully unpacked and MD5 sums checked
** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Sample_IW.cpp -o Sample_IW.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BMTME.so RcppExports.o Sample_IW.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [BMTME.so] Error 1
-ERROR: compilation failed for package ‘BMTME’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BMTME/old/BMTME.Rcheck/BMTME’
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+Error in dyn.load(file, DLLpath = DLLpath, ...) :
+ unable to load shared object '/opt/R/3.6.3/lib/R/library/redland/libs/redland.so':
+ librdf.so.0: cannot open shared object file: No such file or directory
+Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
+Execution halted
+ERROR: lazy loading failed for package ‘rdflib’
+* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’
```
-# BradleyTerryScalable
+# SimDesign
-* Version: 0.1.0
-* Source code: https://github.com/cran/BradleyTerryScalable
-* URL: https://github.com/EllaKaye/BradleyTerryScalable
-* BugReports: https://github.com/EllaKaye/BradleyTerryScalable/issues
-* Date/Publication: 2017-06-29 22:39:23 UTC
-* Number of recursive dependencies: 68
+* Version: 2.0.1
+* Source code: https://github.com/cran/SimDesign
+* URL: https://github.com/philchalmers/SimDesign, https://github.com/philchalmers/SimDesign/wiki
+* Date/Publication: 2020-01-20 19:00:02 UTC
+* Number of recursive dependencies: 88
-Run `revdep_details(,"BradleyTerryScalable")` for more info
+Run `cloud_details(, "SimDesign")` for more info
-## In both
-
-* checking whether package ‘BradleyTerryScalable’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BradleyTerryScalable/new/BradleyTerryScalable.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘BradleyTerryScalable’ ...
-** package ‘BradleyTerryScalable’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c BT_EM_arma_SBT.cpp -o BT_EM_arma_SBT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ILSR_arma.cpp -o ILSR_arma.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c btprob_vec.cpp -o btprob_vec.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BradleyTerryScalable.so BT_EM_arma_SBT.o ILSR_arma.o RcppExports.o btprob_vec.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [BradleyTerryScalable.so] Error 1
-ERROR: compilation failed for package ‘BradleyTerryScalable’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BradleyTerryScalable/new/BradleyTerryScalable.Rcheck/BradleyTerryScalable’
+* using log directory ‘/tmp/workdir/SimDesign/new/SimDesign.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘SimDesign/DESCRIPTION’ ... OK
+* this is package ‘SimDesign’ version ‘2.0.1’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package suggested but not available: ‘doMPI’
-```
-### CRAN
+The suggested packages are required for a complete check.
+Checking can be attempted without them by setting the environment
+variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
-```
-* installing *source* package ‘BradleyTerryScalable’ ...
-** package ‘BradleyTerryScalable’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c BT_EM_arma_SBT.cpp -o BT_EM_arma_SBT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ILSR_arma.cpp -o ILSR_arma.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c btprob_vec.cpp -o btprob_vec.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BradleyTerryScalable.so BT_EM_arma_SBT.o ILSR_arma.o RcppExports.o btprob_vec.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [BradleyTerryScalable.so] Error 1
-ERROR: compilation failed for package ‘BradleyTerryScalable’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BradleyTerryScalable/old/BradleyTerryScalable.Rcheck/BradleyTerryScalable’
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-```
-# brunnermunzel
-
-* Version: 1.4.1
-* Source code: https://github.com/cran/brunnermunzel
-* URL: https://github.com/toshi-ara/brunnermunzel
-* BugReports: https://github.com/toshi-ara/brunnermunzel/issues/
-* Date/Publication: 2020-01-08 00:50:05 UTC
-* Number of recursive dependencies: 64
-Run `revdep_details(,"brunnermunzel")` for more info
-
-## In both
+```
+### CRAN
-* checking whether package ‘brunnermunzel’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/brunnermunzel/new/brunnermunzel.Rcheck/00install.out’ for details.
- ```
+```
+* using log directory ‘/tmp/workdir/SimDesign/old/SimDesign.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘SimDesign/DESCRIPTION’ ... OK
+* this is package ‘SimDesign’ version ‘2.0.1’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package suggested but not available: ‘doMPI’
+
+The suggested packages are required for a complete check.
+Checking can be attempted without them by setting the environment
+variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-## Installation
-### Devel
-```
-* installing *source* package ‘brunnermunzel’ ...
-** package ‘brunnermunzel’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c Rf_wrapper.c -o Rf_wrapper.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_permutation_stat.f -o bm_permutation_stat.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_permutation_test.f -o bm_permutation_test.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_test.f -o bm_test.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c calc_statistics.f -o calc_statistics.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c combination.f -o combination.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c divide_groups.f -o divide_groups.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rank.f -o rank.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o brunnermunzel.so Rf_wrapper.o bm_permutation_stat.o bm_permutation_test.o bm_test.o calc_statistics.o combination.o divide_groups.o rank.o registerDynamicSymbol.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [brunnermunzel.so] Error 1
-ERROR: compilation failed for package ‘brunnermunzel’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/brunnermunzel/new/brunnermunzel.Rcheck/brunnermunzel’
-```
-### CRAN
-```
-* installing *source* package ‘brunnermunzel’ ...
-** package ‘brunnermunzel’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c Rf_wrapper.c -o Rf_wrapper.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_permutation_stat.f -o bm_permutation_stat.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_permutation_test.f -o bm_permutation_test.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_test.f -o bm_test.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c calc_statistics.f -o calc_statistics.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c combination.f -o combination.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c divide_groups.f -o divide_groups.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rank.f -o rank.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o brunnermunzel.so Rf_wrapper.o bm_permutation_stat.o bm_permutation_test.o bm_test.o calc_statistics.o combination.o divide_groups.o rank.o registerDynamicSymbol.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [brunnermunzel.so] Error 1
-ERROR: compilation failed for package ‘brunnermunzel’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/brunnermunzel/old/brunnermunzel.Rcheck/brunnermunzel’
```
-# bsam
+# trackdf
-* Version: 1.1.2
-* Source code: https://github.com/cran/bsam
-* URL: https://github.com/ianjonsen/bsam
-* BugReports: https://github.com/ianjonsen/bsam/issues
-* Date/Publication: 2017-07-01 02:50:50 UTC
-* Number of recursive dependencies: 62
+* Version: 0.2.1
+* Source code: https://github.com/cran/trackdf
+* URL: https://swarm-lab.github.io/trackdf/, https://github.com/swarm-lab/trackdf
+* BugReports: https://github.com/swarm-lab/trackdf/issues
+* Date/Publication: 2019-08-04 14:20:02 UTC
+* Number of recursive dependencies: 130
-Run `revdep_details(,"bsam")` for more info
+Run `cloud_details(, "trackdf")` for more info
-## In both
-
-* checking whether package ‘bsam’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bsam/new/bsam.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘bsam’ ...
-** package ‘bsam’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘rjags’:
- .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so
- Reason: image not found
-Error: package ‘rjags’ could not be loaded
-Execution halted
-ERROR: lazy loading failed for package ‘bsam’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bsam/new/bsam.Rcheck/bsam’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘bsam’ ...
-** package ‘bsam’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: package or namespace load failed for ‘rjags’:
- .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so
- Reason: image not found
-Error: package ‘rjags’ could not be loaded
-Execution halted
-ERROR: lazy loading failed for package ‘bsam’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bsam/old/bsam.Rcheck/bsam’
-
-```
-# BUSpaRse
-
-
-
-* Version: 1.1.5
-* Source code: https://github.com/cran/BUSpaRse
-* URL: https://github.com/BUStools/BUSpaRse
-* BugReports: https://github.com/BUStools/BUSpaRse/issues
-* Date/Publication: 2020-04-26
-* Number of recursive dependencies: 137
-
-Run `revdep_details(,"BUSpaRse")` for more info
-
-
-
-## In both
-
-* checking whether package ‘BUSpaRse’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BUSpaRse/new/BUSpaRse.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Packages suggested but not available for checking:
- 'TENxBUSData', 'TxDb.Hsapiens.UCSC.hg38.knownGene',
- 'EnsDb.Hsapiens.v86'
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘BUSpaRse’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c fill_cell_gene.cpp -o fill_cell_gene.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BUSpaRse.so RcppExports.o fill_cell_gene.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [BUSpaRse.so] Error 1
-ERROR: compilation failed for package ‘BUSpaRse’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BUSpaRse/new/BUSpaRse.Rcheck/BUSpaRse’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘BUSpaRse’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c fill_cell_gene.cpp -o fill_cell_gene.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BUSpaRse.so RcppExports.o fill_cell_gene.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [BUSpaRse.so] Error 1
-ERROR: compilation failed for package ‘BUSpaRse’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BUSpaRse/old/BUSpaRse.Rcheck/BUSpaRse’
-
-```
-# carat
-
-
-
-* Version: 1.0
-* Source code: https://github.com/cran/carat
-* Date/Publication: 2020-05-07 04:40:02 UTC
-* Number of recursive dependencies: 55
-
-Run `revdep_details(,"carat")` for more info
-
-
-
-## In both
-
-* checking whether package ‘carat’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/carat/new/carat.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘carat’ ...
-** package ‘carat’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c All.cpp -o All.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o carat.so All.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [carat.so] Error 1
-ERROR: compilation failed for package ‘carat’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/carat/new/carat.Rcheck/carat’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘carat’ ...
-** package ‘carat’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c All.cpp -o All.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o carat.so All.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [carat.so] Error 1
-ERROR: compilation failed for package ‘carat’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/carat/old/carat.Rcheck/carat’
-
-```
-# CaseBasedReasoning
-
-
-
-* Version: 0.1
-* Source code: https://github.com/cran/CaseBasedReasoning
-* BugReports: https://github.com/sipemu/case-based-reasoning/issues
-* Date/Publication: 2018-06-12 10:34:11 UTC
-* Number of recursive dependencies: 128
-
-Run `revdep_details(,"CaseBasedReasoning")` for more info
-
-
-
-## In both
-
-* checking whether package ‘CaseBasedReasoning’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CaseBasedReasoning/new/CaseBasedReasoning.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘CaseBasedReasoning’ ...
-** package ‘CaseBasedReasoning’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c distanceAPI.cpp -o distanceAPI.o
-In file included from distanceAPI.cpp:1:
-./distanceAPI.h:134:16: warning: 'rfDepthXYDistanceAPI::calc' hides overloaded virtual function [-Woverloaded-virtual]
- virtual void calc(arma::mat& xNodeIDs, arma::mat& yNodeIDs);
- ^
-./distanceAPI.h:121:16: note: hidden overloaded virtual function 'rfDepthDistanceAPI::calc' declared here: different number of parameters (1 vs 2)
- virtual void calc(arma::mat& xNodeIDs);
- ^
-In file included from distanceAPI.cpp:1:
-In file included from ./distanceAPI.h:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/RcppArmadillo.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/RcppArmadilloForward.h:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include/RcppCommon.h:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include/Rcpp/r/headers.h:67:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include/Rcpp/platform/compiler.h:153:
-In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/unordered_map:408:
-In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__hash_table:16:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'weightedDistance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- __data_.second().~_Tp();
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here
- __shared_ptr_emplace(_Alloc __a, _Args&& ...__args)
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here
- ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here
- return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...);
- ^
-distanceAPI.cpp:27:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here
- dist_ = std::make_shared(dist);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning
- __data_.second().~_Tp();
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'rangerProximity' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- __data_.second().~_Tp();
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here
- __shared_ptr_emplace(_Alloc __a, _Args&& ...__args)
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here
- ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here
- return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...);
- ^
-distanceAPI.cpp:89:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here
- dist_ = std::make_shared(dist);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning
- __data_.second().~_Tp();
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'rfDepthDistance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- __data_.second().~_Tp();
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here
- __shared_ptr_emplace(_Alloc __a, _Args&& ...__args)
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here
- ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here
- return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...);
- ^
-distanceAPI.cpp:124:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here
- dist_ = std::make_shared(dist);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning
- __data_.second().~_Tp();
- ^
-4 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c distances.cpp -o distances.o
-In file included from distances.cpp:4:
-./distanceAPI.h:134:16: warning: 'rfDepthXYDistanceAPI::calc' hides overloaded virtual function [-Woverloaded-virtual]
- virtual void calc(arma::mat& xNodeIDs, arma::mat& yNodeIDs);
- ^
-./distanceAPI.h:121:16: note: hidden overloaded virtual function 'rfDepthDistanceAPI::calc' declared here: different number of parameters (1 vs 2)
- virtual void calc(arma::mat& xNodeIDs);
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c kNN.cpp -o kNN.o
-kNN.cpp:25:19: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations]
- order = arma::sort_index(tmpDist, sortDirection);
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here
-arma_deprecated
-^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated'
- #define arma_deprecated __attribute__((__deprecated__))
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c order.cpp -o order.o
-order.cpp:26:21: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations]
- order = arma::sort_index(x_.col(i), sortDirection_);
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here
-arma_deprecated
-^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated'
- #define arma_deprecated __attribute__((__deprecated__))
- ^
-order.cpp:75:28: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations]
- arma::uvec order = arma::sort_index(x, sortDirection) + 1;
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here
-arma_deprecated
-^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated'
- #define arma_deprecated __attribute__((__deprecated__))
- ^
-2 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c parallelTerminalNodeID.cpp -o parallelTerminalNodeID.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CaseBasedReasoning.so RcppExports.o distanceAPI.o distances.o kNN.o order.o parallelTerminalNodeID.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [CaseBasedReasoning.so] Error 1
-ERROR: compilation failed for package ‘CaseBasedReasoning’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CaseBasedReasoning/new/CaseBasedReasoning.Rcheck/CaseBasedReasoning’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘CaseBasedReasoning’ ...
-** package ‘CaseBasedReasoning’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c distanceAPI.cpp -o distanceAPI.o
-In file included from distanceAPI.cpp:1:
-./distanceAPI.h:134:16: warning: 'rfDepthXYDistanceAPI::calc' hides overloaded virtual function [-Woverloaded-virtual]
- virtual void calc(arma::mat& xNodeIDs, arma::mat& yNodeIDs);
- ^
-./distanceAPI.h:121:16: note: hidden overloaded virtual function 'rfDepthDistanceAPI::calc' declared here: different number of parameters (1 vs 2)
- virtual void calc(arma::mat& xNodeIDs);
- ^
-In file included from distanceAPI.cpp:1:
-In file included from ./distanceAPI.h:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/RcppArmadillo.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/RcppArmadilloForward.h:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/r/headers.h:67:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/platform/compiler.h:153:
-In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/unordered_map:408:
-In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__hash_table:16:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'weightedDistance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- __data_.second().~_Tp();
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here
- __shared_ptr_emplace(_Alloc __a, _Args&& ...__args)
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here
- ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here
- return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...);
- ^
-distanceAPI.cpp:27:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here
- dist_ = std::make_shared(dist);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning
- __data_.second().~_Tp();
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'rangerProximity' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- __data_.second().~_Tp();
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here
- __shared_ptr_emplace(_Alloc __a, _Args&& ...__args)
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here
- ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here
- return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...);
- ^
-distanceAPI.cpp:89:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here
- dist_ = std::make_shared(dist);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning
- __data_.second().~_Tp();
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'rfDepthDistance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- __data_.second().~_Tp();
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here
- __shared_ptr_emplace(_Alloc __a, _Args&& ...__args)
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here
- ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here
- return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...);
- ^
-distanceAPI.cpp:124:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here
- dist_ = std::make_shared(dist);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning
- __data_.second().~_Tp();
- ^
-4 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c distances.cpp -o distances.o
-In file included from distances.cpp:4:
-./distanceAPI.h:134:16: warning: 'rfDepthXYDistanceAPI::calc' hides overloaded virtual function [-Woverloaded-virtual]
- virtual void calc(arma::mat& xNodeIDs, arma::mat& yNodeIDs);
- ^
-./distanceAPI.h:121:16: note: hidden overloaded virtual function 'rfDepthDistanceAPI::calc' declared here: different number of parameters (1 vs 2)
- virtual void calc(arma::mat& xNodeIDs);
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c kNN.cpp -o kNN.o
-kNN.cpp:25:19: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations]
- order = arma::sort_index(tmpDist, sortDirection);
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here
-arma_deprecated
-^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated'
- #define arma_deprecated __attribute__((__deprecated__))
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c order.cpp -o order.o
-order.cpp:26:21: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations]
- order = arma::sort_index(x_.col(i), sortDirection_);
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here
-arma_deprecated
-^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated'
- #define arma_deprecated __attribute__((__deprecated__))
- ^
-order.cpp:75:28: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations]
- arma::uvec order = arma::sort_index(x, sortDirection) + 1;
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here
-arma_deprecated
-^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated'
- #define arma_deprecated __attribute__((__deprecated__))
- ^
-2 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c parallelTerminalNodeID.cpp -o parallelTerminalNodeID.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CaseBasedReasoning.so RcppExports.o distanceAPI.o distances.o kNN.o order.o parallelTerminalNodeID.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [CaseBasedReasoning.so] Error 1
-ERROR: compilation failed for package ‘CaseBasedReasoning’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CaseBasedReasoning/old/CaseBasedReasoning.Rcheck/CaseBasedReasoning’
-
-```
-# CB2
-
-
-
-* Version: 1.3.1
-* Source code: https://github.com/cran/CB2
-* Date/Publication: 2020-04-15 06:00:02 UTC
-* Number of recursive dependencies: 96
+* using log directory ‘/tmp/workdir/trackdf/new/trackdf.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘trackdf/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘trackdf’ version ‘0.2.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package suggested but not available: ‘moveVis’
-Run `revdep_details(,"CB2")` for more info
+The suggested packages are required for a complete check.
+Checking can be attempted without them by setting the environment
+variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
-
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-## In both
-* checking whether package ‘CB2’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CB2/new/CB2.Rcheck/00install.out’ for details.
- ```
-## Installation
-### Devel
-```
-* installing *source* package ‘CB2’ ...
-** package ‘CB2’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CB2.cpp -o CB2.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CB2.so CB2.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [CB2.so] Error 1
-ERROR: compilation failed for package ‘CB2’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CB2/new/CB2.Rcheck/CB2’
```
### CRAN
```
-* installing *source* package ‘CB2’ ...
-** package ‘CB2’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CB2.cpp -o CB2.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CB2.so CB2.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [CB2.so] Error 1
-ERROR: compilation failed for package ‘CB2’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CB2/old/CB2.Rcheck/CB2’
-
-```
-# ChIPseeker
-
-
-
-* Version:
-* Source code: ???
-* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr
-* BugReports: https://github.com/tidyverse/dplyr/issues
-* Number of recursive dependencies: 0
-
-Run `revdep_details(,"")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-ggupset 0.2.1 0.3.0 FALSE
-rtracklayer 1.47.0 1.48.0 TRUE
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
-
-
-installing the source packages ‘ggupset’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
-
-
-
-```
-### CRAN
+* using log directory ‘/tmp/workdir/trackdf/old/trackdf.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘trackdf/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘trackdf’ version ‘0.2.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package suggested but not available: ‘moveVis’
-```
+The suggested packages are required for a complete check.
+Checking can be attempted without them by setting the environment
+variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-ggupset 0.2.1 0.3.0 FALSE
-rtracklayer 1.47.0 1.48.0 TRUE
-tidyr 1.0.2 1.0.3 TRUE
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
- Binaries will be installed
-installing the source packages ‘ggupset’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
```
-# CINdex
+# trackr
-* Version:
-* Source code: ???
-* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr
-* BugReports: https://github.com/tidyverse/dplyr/issues
-* Number of recursive dependencies: 0
+* Version: 0.10.6
+* Source code: https://github.com/cran/trackr
+* Date/Publication: 2020-02-29 05:40:07 UTC
+* Number of recursive dependencies: 106
-Run `revdep_details(,"")` for more info
+Run `cloud_details(, "trackr")` for more info
@@ -1793,16 +920,26 @@ Run `revdep_details(,"")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/trackr/new/trackr.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘trackr/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘trackr’ version ‘0.10.6’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available:
+ 'histry', 'CodeDepends', 'rsolr', 'roprov'
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-rtracklayer 1.47.0 1.48.0 TRUE
-tidyr 1.0.2 1.0.3 TRUE
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
- Binaries will be installed
-installing the source packages ‘Homo.sapiens’, ‘pd.genomewidesnp.6’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg18.knownGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
@@ -1810,123 +947,42 @@ installing the source packages ‘Homo.sapiens’, ‘pd.genomewidesnp.6’, ‘
### CRAN
```
+* using log directory ‘/tmp/workdir/trackr/old/trackr.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘trackr/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘trackr’ version ‘0.10.6’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available:
+ 'histry', 'CodeDepends', 'rsolr', 'roprov'
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-rtracklayer 1.47.0 1.48.0 TRUE
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
-
-
-installing the source packages ‘Homo.sapiens’, ‘pd.genomewidesnp.6’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg18.knownGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’
-
-
-
-```
-# circumplex
-
-
-
-* Version: 0.3.6
-* Source code: https://github.com/cran/circumplex
-* URL: https://github.com/jmgirard/circumplex
-* BugReports: https://github.com/jmgirard/circumplex/issues
-* Date/Publication: 2020-04-29 22:00:03 UTC
-* Number of recursive dependencies: 93
-
-Run `revdep_details(,"circumplex")` for more info
-
-
-
-## In both
-
-* checking whether package ‘circumplex’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/circumplex/new/circumplex.Rcheck/00install.out’ for details.
- ```
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-## Installation
-### Devel
-```
-* installing *source* package ‘circumplex’ ...
-** package ‘circumplex’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c circular.cpp -o circular.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c parameters.cpp -o parameters.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o circumplex.so RcppExports.o circular.o parameters.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [circumplex.so] Error 1
-ERROR: compilation failed for package ‘circumplex’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/circumplex/new/circumplex.Rcheck/circumplex’
-```
-### CRAN
-```
-* installing *source* package ‘circumplex’ ...
-** package ‘circumplex’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c circular.cpp -o circular.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c parameters.cpp -o parameters.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o circumplex.so RcppExports.o circular.o parameters.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [circumplex.so] Error 1
-ERROR: compilation failed for package ‘circumplex’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/circumplex/old/circumplex.Rcheck/circumplex’
```
-# clustermq
-
-
-
-* Version: 0.8.9
-* Source code: https://github.com/cran/clustermq
-* URL: https://github.com/mschubert/clustermq
-* BugReports: https://github.com/mschubert/clustermq/issues
-* Date/Publication: 2020-02-29 19:20:02 UTC
-* Number of recursive dependencies: 85
-
-Run `revdep_details(,"clustermq")` for more info
-
-
-
-## In both
-
-* R CMD check timed out
-
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘R6’ ‘purrr’
- All declared Imports should be used.
- ```
-
-# clusterProfiler
+# wrswoR
-* Version:
-* Source code: ???
-* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr
-* BugReports: https://github.com/tidyverse/dplyr/issues
-* Number of recursive dependencies: 0
+* Version: 1.1
+* Source code: https://github.com/cran/wrswoR
+* URL: http://krlmlr.github.io/wrswoR
+* BugReports: https://github.com/krlmlr/wrswoR/issues
+* Date/Publication: 2018-02-02 18:26:36 UTC
+* Number of recursive dependencies: 125
-Run `revdep_details(,"")` for more info
+Run `cloud_details(, "wrswoR")` for more info
@@ -1935,12026 +991,62 @@ Run `revdep_details(,"")` for more info
### Devel
```
+* using log directory ‘/tmp/workdir/wrswoR/new/wrswoR.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘wrswoR/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘wrswoR’ version ‘1.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package suggested but not available: ‘metap’
- There is a binary version available but the source version is later:
- binary source needs_compilation
-tidyr 1.0.2 1.0.3 TRUE
+The suggested packages are required for a complete check.
+Checking can be attempted without them by setting the environment
+variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
- Binaries will be installed
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-installing the source package ‘reactome.db’
-```
-### CRAN
-
-```
-
- There is a binary version available but the source version is later:
- binary source needs_compilation
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
-
-
-installing the source package ‘reactome.db’
-
-
-
-```
-# CNPBayes
-
-
-
-* Version: 1.13.5
-* Source code: https://github.com/cran/CNPBayes
-* URL: https://github.com/scristia/CNPBayes
-* BugReports: https://github.com/scristia/CNPBayes/issues
-* Date/Publication: 2019-01-05
-* Number of recursive dependencies: 161
-
-Run `revdep_details(,"CNPBayes")` for more info
-
-
-
-## In both
-
-* checking whether package ‘CNPBayes’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CNPBayes/new/CNPBayes.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘CNPBayes’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c miscfunctions.cpp -o miscfunctions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch.cpp -o multibatch.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch_pooledvar.cpp -o multibatch_pooledvar.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch_reduced.cpp -o multibatch_reduced.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c pooledvar_reduced.cpp -o pooledvar_reduced.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c triomodel.cpp -o triomodel.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNPBayes.so RcppExports.o miscfunctions.o multibatch.o multibatch_pooledvar.o multibatch_reduced.o pooledvar_reduced.o triomodel.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [CNPBayes.so] Error 1
-ERROR: compilation failed for package ‘CNPBayes’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CNPBayes/new/CNPBayes.Rcheck/CNPBayes’
```
### CRAN
```
-* installing *source* package ‘CNPBayes’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c miscfunctions.cpp -o miscfunctions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch.cpp -o multibatch.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch_pooledvar.cpp -o multibatch_pooledvar.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch_reduced.cpp -o multibatch_reduced.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c pooledvar_reduced.cpp -o pooledvar_reduced.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c triomodel.cpp -o triomodel.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNPBayes.so RcppExports.o miscfunctions.o multibatch.o multibatch_pooledvar.o multibatch_reduced.o pooledvar_reduced.o triomodel.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [CNPBayes.so] Error 1
-ERROR: compilation failed for package ‘CNPBayes’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CNPBayes/old/CNPBayes.Rcheck/CNPBayes’
-
-```
-# colorednoise
-
-
-
-* Version: 1.0.5
-* Source code: https://github.com/cran/colorednoise
-* BugReports: http://github.com/japilo/colorednoise/issues
-* Date/Publication: 2019-09-27 13:10:02 UTC
-* Number of recursive dependencies: 81
-
-Run `revdep_details(,"colorednoise")` for more info
-
-
+* using log directory ‘/tmp/workdir/wrswoR/old/wrswoR.Rcheck’
+* using R version 3.6.3 (2020-02-29)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘wrswoR/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘wrswoR’ version ‘1.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package suggested but not available: ‘metap’
-## In both
+The suggested packages are required for a complete check.
+Checking can be attempted without them by setting the environment
+variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
-* checking whether package ‘colorednoise’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/colorednoise/new/colorednoise.Rcheck/00install.out’ for details.
- ```
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
-## Installation
-### Devel
-```
-* installing *source* package ‘colorednoise’ ...
-** package ‘colorednoise’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c noise.cpp -o noise.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c simulation.cpp -o simulation.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o colorednoise.so RcppExports.o noise.o simulation.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [colorednoise.so] Error 1
-ERROR: compilation failed for package ‘colorednoise’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/colorednoise/new/colorednoise.Rcheck/colorednoise’
-```
-### CRAN
-```
-* installing *source* package ‘colorednoise’ ...
-** package ‘colorednoise’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c noise.cpp -o noise.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c simulation.cpp -o simulation.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o colorednoise.so RcppExports.o noise.o simulation.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [colorednoise.so] Error 1
-ERROR: compilation failed for package ‘colorednoise’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/colorednoise/old/colorednoise.Rcheck/colorednoise’
```
-# COMPASS
-
-
-
-* Version: 1.26.0
-* Source code: https://github.com/cran/COMPASS
-* BugReports: https://github.com/RGLab/COMPASS/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 132
-
-Run `revdep_details(,"COMPASS")` for more info
-
-
-
-## In both
-
-* checking whether package ‘COMPASS’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/COMPASS/new/COMPASS.Rcheck/00install.out’ for details.
- ```
-
-* checking for hidden files and directories ... NOTE
- ```
- Found the following hidden files and directories:
- .github
- These were most likely included in error. See section ‘Package
- structure’ in the ‘Writing R Extensions’ manual.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘COMPASS’ ...
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c COMPASS_init.c -o COMPASS_init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c CellCounts.cpp -o CellCounts.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c CellCounts_character.cpp -o CellCounts_character.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c digamma.c -o digamma.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c mat2vec.c -o mat2vec.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c melt_dataframe.c -o melt_dataframe.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c melt_matrix.c -o melt_matrix.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c samplePuPs.cpp -o samplePuPs.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c transpose_list.c -o transpose_list.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphas_Exp.cpp -o updatealphas_Exp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphau.cpp -o updatealphau.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphau_noPu_Exp.cpp -o updatealphau_noPu_Exp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatebeta_RW.cpp -o updatebeta_RW.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updategammak_noPu.cpp -o updategammak_noPu.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c utils.c -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o COMPASS.so COMPASS_init.o CellCounts.o CellCounts_character.o RcppExports.o digamma.o mat2vec.o melt_dataframe.o melt_matrix.o samplePuPs.o transpose_list.o updatealphas_Exp.o updatealphau.o updatealphau_noPu_Exp.o updatebeta_RW.o updategammak_noPu.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [COMPASS.so] Error 1
-ERROR: compilation failed for package ‘COMPASS’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/COMPASS/new/COMPASS.Rcheck/COMPASS’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘COMPASS’ ...
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c COMPASS_init.c -o COMPASS_init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c CellCounts.cpp -o CellCounts.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c CellCounts_character.cpp -o CellCounts_character.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c digamma.c -o digamma.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c mat2vec.c -o mat2vec.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c melt_dataframe.c -o melt_dataframe.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c melt_matrix.c -o melt_matrix.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c samplePuPs.cpp -o samplePuPs.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c transpose_list.c -o transpose_list.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphas_Exp.cpp -o updatealphas_Exp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphau.cpp -o updatealphau.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphau_noPu_Exp.cpp -o updatealphau_noPu_Exp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatebeta_RW.cpp -o updatebeta_RW.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updategammak_noPu.cpp -o updategammak_noPu.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c utils.c -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o COMPASS.so COMPASS_init.o CellCounts.o CellCounts_character.o RcppExports.o digamma.o mat2vec.o melt_dataframe.o melt_matrix.o samplePuPs.o transpose_list.o updatealphas_Exp.o updatealphau.o updatealphau_noPu_Exp.o updatebeta_RW.o updategammak_noPu.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [COMPASS.so] Error 1
-ERROR: compilation failed for package ‘COMPASS’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/COMPASS/old/COMPASS.Rcheck/COMPASS’
-
-```
-# concurve
-
-
-
-* Version: 2.5.0
-* Source code: https://github.com/cran/concurve
-* URL: https://data.lesslikely.com/concurve/, https://github.com/zadrafi/concurve, https://lesslikely.com/
-* BugReports: https://github.com/zadrafi/concurve/issues
-* Date/Publication: 2020-04-20 06:00:02 UTC
-* Number of recursive dependencies: 206
-
-Run `revdep_details(,"concurve")` for more info
-
-
-
-## In both
-
-* checking whether package ‘concurve’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/concurve/new/concurve.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘concurve’ ...
-** package ‘concurve’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘ggpubr’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘concurve’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/concurve/new/concurve.Rcheck/concurve’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘concurve’ ...
-** package ‘concurve’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘ggpubr’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘concurve’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/concurve/old/concurve.Rcheck/concurve’
-
-```
-# corrcoverage
-
-
-
-* Version: 1.2.1
-* Source code: https://github.com/cran/corrcoverage
-* URL: https://annahutch.github.io/corrcoverage
-* BugReports: https://github.com/annahutch/corrcoverage/issues
-* Date/Publication: 2019-12-06 23:20:12 UTC
-* Number of recursive dependencies: 69
-
-Run `revdep_details(,"corrcoverage")` for more info
-
-
-
-## In both
-
-* checking whether package ‘corrcoverage’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/corrcoverage/new/corrcoverage.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘corrcoverage’ ...
-** package ‘corrcoverage’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c credsetmat.cpp -o credsetmat.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o corrcoverage.so RcppExports.o credsetmat.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [corrcoverage.so] Error 1
-ERROR: compilation failed for package ‘corrcoverage’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/corrcoverage/new/corrcoverage.Rcheck/corrcoverage’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘corrcoverage’ ...
-** package ‘corrcoverage’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c credsetmat.cpp -o credsetmat.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o corrcoverage.so RcppExports.o credsetmat.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [corrcoverage.so] Error 1
-ERROR: compilation failed for package ‘corrcoverage’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/corrcoverage/old/corrcoverage.Rcheck/corrcoverage’
-
-```
-# Countr
-
-
-
-* Version: 3.5.4
-* Source code: https://github.com/cran/Countr
-* URL: https://github.com/GeoBosh/Countr https://geobosh.github.io/Countr/
-* BugReports: https://github.com/GeoBosh/Countr/issues
-* Date/Publication: 2019-08-21 11:30:06 UTC
-* Number of recursive dependencies: 102
-
-Run `revdep_details(,"Countr")` for more info
-
-
-
-## In both
-
-* checking whether package ‘Countr’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Countr/new/Countr.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘Countr’ ...
-** package ‘Countr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c built_in_distributions.cpp -o built_in_distributions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_all.cpp -o conv_all.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_dePril.cpp -o conv_dePril.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_naive.cpp -o conv_naive.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c modifiedRenewal.cpp -o modifiedRenewal.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c series_hetwei.cpp -o series_hetwei.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c series_weibull.cpp -o series_weibull.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Countr.so RcppExports.o built_in_distributions.o conv_all.o conv_dePril.o conv_naive.o modifiedRenewal.o series_hetwei.o series_weibull.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [Countr.so] Error 1
-ERROR: compilation failed for package ‘Countr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Countr/new/Countr.Rcheck/Countr’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘Countr’ ...
-** package ‘Countr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c built_in_distributions.cpp -o built_in_distributions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_all.cpp -o conv_all.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_dePril.cpp -o conv_dePril.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_naive.cpp -o conv_naive.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c modifiedRenewal.cpp -o modifiedRenewal.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c series_hetwei.cpp -o series_hetwei.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c series_weibull.cpp -o series_weibull.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Countr.so RcppExports.o built_in_distributions.o conv_all.o conv_dePril.o conv_naive.o modifiedRenewal.o series_hetwei.o series_weibull.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [Countr.so] Error 1
-ERROR: compilation failed for package ‘Countr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Countr/old/Countr.Rcheck/Countr’
-
-```
-# cpr
-
-
-
-* Version: 0.2.3
-* Source code: https://github.com/cran/cpr
-* URL: https://github.com/dewittpe/cpr/
-* Date/Publication: 2017-03-07 13:41:34
-* Number of recursive dependencies: 101
-
-Run `revdep_details(,"cpr")` for more info
-
-
-
-## In both
-
-* checking whether package ‘cpr’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/cpr/new/cpr.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘cpr’ ...
-** package ‘cpr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c boehm.cpp -o boehm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c bsplines.cpp -o bsplines.o
-bsplines.cpp:24:10: warning: unused variable 'a' [-Wunused-variable]
- double a = 0.0;
- ^
-bsplines.cpp:25:10: warning: unused variable 'b' [-Wunused-variable]
- double b = 0.0;
- ^
-2 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c cpr.cpp -o cpr.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c diag_only.cpp -o diag_only.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c matrix_rank.cpp -o matrix_rank.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c tensors.cpp -o tensors.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cpr.so RcppExports.o boehm.o bsplines.o cpr.o diag_only.o matrix_rank.o registerDynamicSymbol.o tensors.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [cpr.so] Error 1
-ERROR: compilation failed for package ‘cpr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/cpr/new/cpr.Rcheck/cpr’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘cpr’ ...
-** package ‘cpr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c boehm.cpp -o boehm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c bsplines.cpp -o bsplines.o
-bsplines.cpp:24:10: warning: unused variable 'a' [-Wunused-variable]
- double a = 0.0;
- ^
-bsplines.cpp:25:10: warning: unused variable 'b' [-Wunused-variable]
- double b = 0.0;
- ^
-2 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c cpr.cpp -o cpr.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c diag_only.cpp -o diag_only.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c matrix_rank.cpp -o matrix_rank.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c tensors.cpp -o tensors.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cpr.so RcppExports.o boehm.o bsplines.o cpr.o diag_only.o matrix_rank.o registerDynamicSymbol.o tensors.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [cpr.so] Error 1
-ERROR: compilation failed for package ‘cpr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/cpr/old/cpr.Rcheck/cpr’
-
-```
-# crawl
-
-
-
-* Version: 2.2.1
-* Source code: https://github.com/cran/crawl
-* Date/Publication: 2018-09-14 19:20:10 UTC
-* Number of recursive dependencies: 110
-
-Run `revdep_details(,"crawl")` for more info
-
-
-
-## In both
-
-* checking whether package ‘crawl’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/crawl/new/crawl.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘crawl’ ...
-** package ‘crawl’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWN2LL.cpp -o CTCRWN2LL.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWN2LL_DRIFT.cpp -o CTCRWN2LL_DRIFT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWPREDICT.cpp -o CTCRWPREDICT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWPREDICT_DRIFT.cpp -o CTCRWPREDICT_DRIFT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWSAMPLE.cpp -o CTCRWSAMPLE.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWSAMPLE_DRIFT.cpp -o CTCRWSAMPLE_DRIFT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c SMM_MATS.cpp -o SMM_MATS.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o crawl.so CTCRWN2LL.o CTCRWN2LL_DRIFT.o CTCRWPREDICT.o CTCRWPREDICT_DRIFT.o CTCRWSAMPLE.o CTCRWSAMPLE_DRIFT.o RcppExports.o SMM_MATS.o init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [crawl.so] Error 1
-ERROR: compilation failed for package ‘crawl’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/crawl/new/crawl.Rcheck/crawl’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘crawl’ ...
-** package ‘crawl’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWN2LL.cpp -o CTCRWN2LL.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWN2LL_DRIFT.cpp -o CTCRWN2LL_DRIFT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWPREDICT.cpp -o CTCRWPREDICT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWPREDICT_DRIFT.cpp -o CTCRWPREDICT_DRIFT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWSAMPLE.cpp -o CTCRWSAMPLE.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWSAMPLE_DRIFT.cpp -o CTCRWSAMPLE_DRIFT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c SMM_MATS.cpp -o SMM_MATS.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o crawl.so CTCRWN2LL.o CTCRWN2LL_DRIFT.o CTCRWPREDICT.o CTCRWPREDICT_DRIFT.o CTCRWSAMPLE.o CTCRWSAMPLE_DRIFT.o RcppExports.o SMM_MATS.o init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [crawl.so] Error 1
-ERROR: compilation failed for package ‘crawl’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/crawl/old/crawl.Rcheck/crawl’
-
-```
-# CytoML
-
-
-
-* Version: 2.0.0
-* Source code: https://github.com/cran/CytoML
-* URL: https://github.com/RGLab/CytoML
-* BugReports: https://github.com/RGLab/CytoML/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 113
-
-Run `revdep_details(,"CytoML")` for more info
-
-
-
-## In both
-
-* checking whether package ‘CytoML’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CytoML/new/CytoML.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘CytoML’ ...
-** using staged installation
-checking whether the C++ compiler works... yes
-checking for C++ compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C++ compiler... yes
-checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 accepts -g... yes
-checking for gcc... clang -mmacosx-version-min=10.13
-checking whether we are using the GNU C compiler... yes
-checking whether clang -mmacosx-version-min=10.13 accepts -g... yes
-checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed
-configure: setting xml2 flags...
-configure: No directory was specified for --with-xml2. Trying to find xml2 using other methods.
-checking for xml2-config... /usr/bin/xml2-config
-configure: setting cytolib-ml commandline tool path...
-configure: Using the following compilation and linking flags
-configure: PKG_CPPFLAGS=-I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900
-configure: PKG_LIBS=-L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib -lxml2 -lz -lpthread -licucore -lm
-configure: CYTOLIBML_BIN=/usr/local/bin
-configure: creating ./config.status
-config.status: creating src/Makevars
-config.status: creating R/cytolibml_bin_path.R
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include/ -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900 -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/flowWorkspace/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:4:
-In file included from ./../inst/include/CytoML.h:5:
-In file included from ../inst/include/CytoML/openWorkspace.hpp:12:
-../inst/include/CytoML/winFlowJoWorkspace.hpp:439:30: warning: '/*' within block comment [-Wcomment]
- * "*[local-name()='edge']/*[local-name()='vertex']" is for ellipsoidGate
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include/ -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900 -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/flowWorkspace/include' -I/usr/local/include -fPIC -Wall -g -O2 -c parseFlowJoWorkspace.cpp -o parseFlowJoWorkspace.o
-In file included from parseFlowJoWorkspace.cpp:9:
-In file included from ../inst/include/CytoML/openWorkspace.hpp:12:
-../inst/include/CytoML/winFlowJoWorkspace.hpp:439:30: warning: '/*' within block comment [-Wcomment]
- * "*[local-name()='edge']/*[local-name()='vertex']" is for ellipsoidGate
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CytoML.so RcppExports.o parseFlowJoWorkspace.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib -lxml2 -lz -lpthread -licucore -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [CytoML.so] Error 1
-ERROR: compilation failed for package ‘CytoML’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CytoML/new/CytoML.Rcheck/CytoML’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘CytoML’ ...
-** using staged installation
-checking whether the C++ compiler works... yes
-checking for C++ compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C++ compiler... yes
-checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 accepts -g... yes
-checking for gcc... clang -mmacosx-version-min=10.13
-checking whether we are using the GNU C compiler... yes
-checking whether clang -mmacosx-version-min=10.13 accepts -g... yes
-checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed
-configure: setting xml2 flags...
-configure: No directory was specified for --with-xml2. Trying to find xml2 using other methods.
-checking for xml2-config... /usr/bin/xml2-config
-configure: setting cytolib-ml commandline tool path...
-configure: Using the following compilation and linking flags
-configure: PKG_CPPFLAGS=-I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900
-configure: PKG_LIBS=-L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib -lxml2 -lz -lpthread -licucore -lm
-configure: CYTOLIBML_BIN=/usr/local/bin
-configure: creating ./config.status
-config.status: creating src/Makevars
-config.status: creating R/cytolibml_bin_path.R
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include/ -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900 -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/flowWorkspace/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:4:
-In file included from ./../inst/include/CytoML.h:5:
-In file included from ../inst/include/CytoML/openWorkspace.hpp:12:
-../inst/include/CytoML/winFlowJoWorkspace.hpp:439:30: warning: '/*' within block comment [-Wcomment]
- * "*[local-name()='edge']/*[local-name()='vertex']" is for ellipsoidGate
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include/ -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900 -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/flowWorkspace/include' -I/usr/local/include -fPIC -Wall -g -O2 -c parseFlowJoWorkspace.cpp -o parseFlowJoWorkspace.o
-In file included from parseFlowJoWorkspace.cpp:9:
-In file included from ../inst/include/CytoML/openWorkspace.hpp:12:
-../inst/include/CytoML/winFlowJoWorkspace.hpp:439:30: warning: '/*' within block comment [-Wcomment]
- * "*[local-name()='edge']/*[local-name()='vertex']" is for ellipsoidGate
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CytoML.so RcppExports.o parseFlowJoWorkspace.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib -lxml2 -lz -lpthread -licucore -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [CytoML.so] Error 1
-ERROR: compilation failed for package ‘CytoML’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CytoML/old/CytoML.Rcheck/CytoML’
-
-```
-# dann
-
-
-
-* Version: 0.2.0
-* Source code: https://github.com/cran/dann
-* Date/Publication: 2020-03-14 05:20:02 UTC
-* Number of recursive dependencies: 86
-
-Run `revdep_details(,"dann")` for more info
-
-
-
-## In both
-
-* checking whether package ‘dann’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dann/new/dann.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘dann’ ...
-** package ‘dann’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c internal_armadillo_helpers.cpp -o internal_armadillo_helpers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c internal_helpers_C.cpp -o internal_helpers_C.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dann.so RcppExports.o internal_armadillo_helpers.o internal_helpers_C.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dann.so] Error 1
-ERROR: compilation failed for package ‘dann’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dann/new/dann.Rcheck/dann’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘dann’ ...
-** package ‘dann’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c internal_armadillo_helpers.cpp -o internal_armadillo_helpers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c internal_helpers_C.cpp -o internal_helpers_C.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dann.so RcppExports.o internal_armadillo_helpers.o internal_helpers_C.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dann.so] Error 1
-ERROR: compilation failed for package ‘dann’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dann/old/dann.Rcheck/dann’
-
-```
-# DAPAR
-
-
-
-* Version: 1.20.1
-* Source code: https://github.com/cran/DAPAR
-* Date/Publication: 2020-05-06
-* Number of recursive dependencies: 248
-
-Run `revdep_details(,"DAPAR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘DAPAR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DAPAR/new/DAPAR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘DAPAR’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so
- Reason: image not found
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘DAPAR’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DAPAR/new/DAPAR.Rcheck/DAPAR’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘DAPAR’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so
- Reason: image not found
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘DAPAR’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DAPAR/old/DAPAR.Rcheck/DAPAR’
-
-```
-# DataVisualizations
-
-
-
-* Version: 1.1.11
-* Source code: https://github.com/cran/DataVisualizations
-* URL: http://www.deepbionics.org
-* BugReports: https://github.com/Mthrun/DataVisualizations/issues
-* Date/Publication: 2020-02-13 17:50:02 UTC
-* Number of recursive dependencies: 152
-
-Run `revdep_details(,"DataVisualizations")` for more info
-
-
-
-## In both
-
-* checking whether package ‘DataVisualizations’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DataVisualizations/new/DataVisualizations.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘modes’
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘DataVisualizations’ ...
-** package ‘DataVisualizations’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c c_inPSphere2D.cpp -o c_inPSphere2D.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c c_quantile.cpp -o c_quantile.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DataVisualizations.so RcppExports.o c_inPSphere2D.o c_quantile.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [DataVisualizations.so] Error 1
-ERROR: compilation failed for package ‘DataVisualizations’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DataVisualizations/new/DataVisualizations.Rcheck/DataVisualizations’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘DataVisualizations’ ...
-** package ‘DataVisualizations’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c c_inPSphere2D.cpp -o c_inPSphere2D.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c c_quantile.cpp -o c_quantile.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DataVisualizations.so RcppExports.o c_inPSphere2D.o c_quantile.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [DataVisualizations.so] Error 1
-ERROR: compilation failed for package ‘DataVisualizations’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DataVisualizations/old/DataVisualizations.Rcheck/DataVisualizations’
-
-```
-# DEP
-
-
-
-* Version: 1.10.0
-* Source code: https://github.com/cran/DEP
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 148
-
-Run `revdep_details(,"DEP")` for more info
-
-
-
-## In both
-
-* checking whether package ‘DEP’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DEP/new/DEP.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘DEP’ ...
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so
- Reason: image not found
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘DEP’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DEP/new/DEP.Rcheck/DEP’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘DEP’ ...
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so
- Reason: image not found
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘DEP’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DEP/old/DEP.Rcheck/DEP’
-
-```
-# DepthProc
-
-
-
-* Version: 2.1.3
-* Source code: https://github.com/cran/DepthProc
-* URL: https://www.depthproc.zstat.pl/, https://github.com/zzawadz/DepthProc
-* BugReports: https://github.com/zzawadz/DepthProc/issues
-* Date/Publication: 2020-02-19 21:00:03 UTC
-* Number of recursive dependencies: 115
-
-Run `revdep_details(,"DepthProc")` for more info
-
-
-
-## In both
-
-* checking whether package ‘DepthProc’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DepthProc/new/DepthProc.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘DepthProc’ ...
-** package ‘DepthProc’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Depth.cpp -o Depth.o
-Depth.cpp:22:14: warning: unused variable 'i' [-Wunused-variable]
- size_t k,i;
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationEstimators.cpp -o LocationEstimators.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationScaleDepth.cpp -o LocationScaleDepth.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RobCovLib.cpp -o RobCovLib.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c TukeyDepth.cpp -o TukeyDepth.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Utils.cpp -o Utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c UtilsCPP.cpp -o UtilsCPP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c covFunCPP.cpp -o covFunCPP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c depthFunCPP.cpp -o depthFunCPP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c depthcpp.cpp -o depthcpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DepthProc.so Depth.o LocationEstimators.o LocationScaleDepth.o LocationScaleDepthCPP.o RcppExports.o RobCovLib.o TukeyDepth.o Utils.o UtilsCPP.o covFunCPP.o depthFunCPP.o depthcpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include" -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [DepthProc.so] Error 1
-ERROR: compilation failed for package ‘DepthProc’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DepthProc/new/DepthProc.Rcheck/DepthProc’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘DepthProc’ ...
-** package ‘DepthProc’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Depth.cpp -o Depth.o
-Depth.cpp:22:14: warning: unused variable 'i' [-Wunused-variable]
- size_t k,i;
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationEstimators.cpp -o LocationEstimators.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationScaleDepth.cpp -o LocationScaleDepth.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RobCovLib.cpp -o RobCovLib.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c TukeyDepth.cpp -o TukeyDepth.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Utils.cpp -o Utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c UtilsCPP.cpp -o UtilsCPP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c covFunCPP.cpp -o covFunCPP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c depthFunCPP.cpp -o depthFunCPP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c depthcpp.cpp -o depthcpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DepthProc.so Depth.o LocationEstimators.o LocationScaleDepth.o LocationScaleDepthCPP.o RcppExports.o RobCovLib.o TukeyDepth.o Utils.o UtilsCPP.o covFunCPP.o depthFunCPP.o depthcpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include" -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [DepthProc.so] Error 1
-ERROR: compilation failed for package ‘DepthProc’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DepthProc/old/DepthProc.Rcheck/DepthProc’
-
-```
-# dexter
-
-
-
-* Version: 1.0.7
-* Source code: https://github.com/cran/dexter
-* URL: http://dexterities.netlify.com
-* BugReports: https://github.com/jessekps/dexter/issues
-* Date/Publication: 2020-04-02 15:00:02 UTC
-* Number of recursive dependencies: 76
-
-Run `revdep_details(,"dexter")` for more info
-
-
-
-## In both
-
-* checking whether package ‘dexter’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dexter/new/dexter.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘dexter’ ...
-** package ‘dexter’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c data.cpp -o data.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c elsym.cpp -o elsym.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c meanelsym.cpp -o meanelsym.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pascal.cpp -o pascal.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c roger.cpp -o roger.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dexter.so RcppExports.o data.o elsym.o meanelsym.o pascal.o roger.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dexter.so] Error 1
-ERROR: compilation failed for package ‘dexter’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dexter/new/dexter.Rcheck/dexter’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘dexter’ ...
-** package ‘dexter’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c data.cpp -o data.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c elsym.cpp -o elsym.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c meanelsym.cpp -o meanelsym.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pascal.cpp -o pascal.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c roger.cpp -o roger.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dexter.so RcppExports.o data.o elsym.o meanelsym.o pascal.o roger.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dexter.so] Error 1
-ERROR: compilation failed for package ‘dexter’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dexter/old/dexter.Rcheck/dexter’
-
-```
-# DiffBind
-
-
-
-* Version: 2.16.0
-* Source code: https://github.com/cran/DiffBind
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 157
-
-Run `revdep_details(,"DiffBind")` for more info
-
-
-
-## In both
-
-* R CMD check timed out
-
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘DESeq’
-
- Packages which this enhances but not available for checking:
- 'rgl', 'XLConnect'
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- pv.DBAplotVolcano: no visible binding for global variable ‘Fold’
- pv.DBAplotVolcano: no visible binding for global variable ‘Legend’
- Undefined global functions or variables:
- Fold Legend
- ```
-
-* checking contents of ‘data’ directory ... NOTE
- ```
- Output for data("tamoxifen_analysis", package = "DiffBind"):
-
- Output for data("tamoxifen_counts", package = "DiffBind"):
-
- ```
-
-* checking for GNU extensions in Makefiles ... NOTE
- ```
- GNU make is a SystemRequirements.
- ```
-
-* checking compiled code ... NOTE
- ```
- File ‘DiffBind/libs/DiffBind.so’:
- Found ‘___stderrp’, possibly from ‘stderr’ (C)
- Object: ‘sam.o’
-
- Compiled code should not call entry points which might terminate R nor
- write to stdout/stderr instead of to the console, nor use Fortran I/O
- nor system RNGs.
-
- See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- ```
-
-# dodgr
-
-
-
-* Version: 0.2.7
-* Source code: https://github.com/cran/dodgr
-* URL: https://github.com/ATFutures/dodgr
-* BugReports: https://github.com/ATFutures/dodgr/issues
-* Date/Publication: 2020-05-05 22:20:02 UTC
-* Number of recursive dependencies: 94
-
-Run `revdep_details(,"dodgr")` for more info
-
-
-
-## In both
-
-* checking whether package ‘dodgr’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dodgr/new/dodgr.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘dodgr’ ...
-** package ‘dodgr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/bheap.cpp -o heaps/bheap.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/fheap.cpp -o heaps/fheap.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/heap23.cpp -o heaps/heap23.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/triheap.cpp -o heaps/triheap.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c centrality.cpp -o centrality.o
-In file included from centrality.cpp:1:
-In file included from ./run_sp.h:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/RcppCommon.h:57:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
- static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
- ^
-./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here
- EdgeSet edge_set;
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator':
- _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
- ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
- __attribute__((diagnose_if(__VA_ARGS__, "warning")))
- ^ ~~~~~~~~~~~
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c dgraph.cpp -o dgraph.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c pathfinders.cpp -o pathfinders.o
-In file included from pathfinders.cpp:1:
-In file included from ./pathfinders.h:7:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
- static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
- ^
-./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here
- EdgeSet edge_set;
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator':
- _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
- ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
- __attribute__((diagnose_if(__VA_ARGS__, "warning")))
- ^ ~~~~~~~~~~~
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c dodgr-to-sf.cpp -o dodgr-to-sf.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c flows.cpp -o flows.o
-In file included from flows.cpp:2:
-In file included from ./run_sp.h:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/RcppCommon.h:57:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
- static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
- ^
-./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here
- EdgeSet edge_set;
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator':
- _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
- ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
- __attribute__((diagnose_if(__VA_ARGS__, "warning")))
- ^ ~~~~~~~~~~~
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c fund-cycles.cpp -o fund-cycles.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph-contract.cpp -o graph-contract.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph.cpp -o graph.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph-sample.cpp -o graph-sample.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c run_sp.cpp -o run_sp.o
-In file included from run_sp.cpp:2:
-In file included from ./run_sp.h:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/RcppCommon.h:57:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
- static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
- ^
-./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here
- EdgeSet edge_set;
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator':
- _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
- ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
- __attribute__((diagnose_if(__VA_ARGS__, "warning")))
- ^ ~~~~~~~~~~~
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c sc-as-network.cpp -o sc-as-network.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c sf-as-network.cpp -o sf-as-network.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c turn_penalty.cpp -o turn_penalty.o
-In file included from turn_penalty.cpp:1:
-In file included from ./turn_penalty.h:3:
-In file included from ./sc-as-network.h:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/RcppCommon.h:57:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
- static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
- ^
-turn_penalty.cpp:49:5: note: in instantiation of template class 'std::__1::set >' requested here
- erase_non_junctions (the_edges, junction_vertices);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator':
- _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
- ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
- __attribute__((diagnose_if(__VA_ARGS__, "warning")))
- ^ ~~~~~~~~~~~
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dodgr.so heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/triheap_ext.o heaps/triheap.o centrality.o dgraph.o pathfinders.o dodgr-to-sf.o flows.o fund-cycles.o graph-contract.o graph.o graph-sample.o RcppExports.o run_sp.o sc-as-network.o sf-as-network.o turn_penalty.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dodgr.so] Error 1
-ERROR: compilation failed for package ‘dodgr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dodgr/new/dodgr.Rcheck/dodgr’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘dodgr’ ...
-** package ‘dodgr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/bheap.cpp -o heaps/bheap.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/fheap.cpp -o heaps/fheap.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/heap23.cpp -o heaps/heap23.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/triheap.cpp -o heaps/triheap.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c centrality.cpp -o centrality.o
-In file included from centrality.cpp:1:
-In file included from ./run_sp.h:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:57:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
- static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
- ^
-./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here
- EdgeSet edge_set;
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator':
- _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
- ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
- __attribute__((diagnose_if(__VA_ARGS__, "warning")))
- ^ ~~~~~~~~~~~
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c dgraph.cpp -o dgraph.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c pathfinders.cpp -o pathfinders.o
-In file included from pathfinders.cpp:1:
-In file included from ./pathfinders.h:7:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
- static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
- ^
-./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here
- EdgeSet edge_set;
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator':
- _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
- ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
- __attribute__((diagnose_if(__VA_ARGS__, "warning")))
- ^ ~~~~~~~~~~~
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c dodgr-to-sf.cpp -o dodgr-to-sf.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c flows.cpp -o flows.o
-In file included from flows.cpp:2:
-In file included from ./run_sp.h:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:57:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
- static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
- ^
-./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here
- EdgeSet edge_set;
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator':
- _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
- ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
- __attribute__((diagnose_if(__VA_ARGS__, "warning")))
- ^ ~~~~~~~~~~~
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c fund-cycles.cpp -o fund-cycles.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph-contract.cpp -o graph-contract.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph.cpp -o graph.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph-sample.cpp -o graph-sample.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c run_sp.cpp -o run_sp.o
-In file included from run_sp.cpp:2:
-In file included from ./run_sp.h:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:57:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
- static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
- ^
-./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here
- EdgeSet edge_set;
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator':
- _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
- ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
- __attribute__((diagnose_if(__VA_ARGS__, "warning")))
- ^ ~~~~~~~~~~~
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c sc-as-network.cpp -o sc-as-network.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c sf-as-network.cpp -o sf-as-network.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c turn_penalty.cpp -o turn_penalty.o
-In file included from turn_penalty.cpp:1:
-In file included from ./turn_penalty.h:3:
-In file included from ./sc-as-network.h:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:57:
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings]
- static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), "");
- ^
-turn_penalty.cpp:49:5: note: in instantiation of template class 'std::__1::set >' requested here
- erase_non_junctions (the_edges, junction_vertices);
- ^
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator':
- _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value,
- ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING'
- __attribute__((diagnose_if(__VA_ARGS__, "warning")))
- ^ ~~~~~~~~~~~
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dodgr.so heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/triheap_ext.o heaps/triheap.o centrality.o dgraph.o pathfinders.o dodgr-to-sf.o flows.o fund-cycles.o graph-contract.o graph.o graph-sample.o RcppExports.o run_sp.o sc-as-network.o sf-as-network.o turn_penalty.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dodgr.so] Error 1
-ERROR: compilation failed for package ‘dodgr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dodgr/old/dodgr.Rcheck/dodgr’
-
-```
-# downscaledl
-
-
-
-* Version: 1.0
-* Source code: https://github.com/cran/downscaledl
-* Date/Publication: 2019-10-24 16:20:10 UTC
-* Number of recursive dependencies: 44
-
-Run `revdep_details(,"downscaledl")` for more info
-
-
-
-## In both
-
-* checking whether package ‘downscaledl’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/downscaledl/new/downscaledl.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘downscaledl’ ...
-** package ‘downscaledl’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rcpparmabasic.cpp -o rcpparmabasic.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o downscaledl.so RcppExports.o rcpparmabasic.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [downscaledl.so] Error 1
-ERROR: compilation failed for package ‘downscaledl’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/downscaledl/new/downscaledl.Rcheck/downscaledl’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘downscaledl’ ...
-** package ‘downscaledl’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rcpparmabasic.cpp -o rcpparmabasic.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o downscaledl.so RcppExports.o rcpparmabasic.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [downscaledl.so] Error 1
-ERROR: compilation failed for package ‘downscaledl’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/downscaledl/old/downscaledl.Rcheck/downscaledl’
-
-```
-# dscore
-
-
-
-* Version: 1.2.0
-* Source code: https://github.com/cran/dscore
-* URL: https://github.com/stefvanbuuren/dscore, https://stefvanbuuren.name/dscore/, https://stefvanbuuren.name/dbook1/
-* BugReports: https://github.com/stefvanbuuren/dscore/issues
-* Date/Publication: 2020-04-02 10:20:02 UTC
-* Number of recursive dependencies: 91
-
-Run `revdep_details(,"dscore")` for more info
-
-
-
-## In both
-
-* checking whether package ‘dscore’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dscore/new/dscore.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘dscore’ ...
-** package ‘dscore’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dscore.cpp -o dscore.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dscore.so RcppExports.o dscore.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dscore.so] Error 1
-ERROR: compilation failed for package ‘dscore’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dscore/new/dscore.Rcheck/dscore’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘dscore’ ...
-** package ‘dscore’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dscore.cpp -o dscore.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dscore.so RcppExports.o dscore.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dscore.so] Error 1
-ERROR: compilation failed for package ‘dscore’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dscore/old/dscore.Rcheck/dscore’
-
-```
-# dtwclust
-
-
-
-* Version: 5.5.6
-* Source code: https://github.com/cran/dtwclust
-* URL: https://github.com/asardaes/dtwclust
-* BugReports: https://github.com/asardaes/dtwclust/issues
-* Date/Publication: 2019-12-11 08:20:02 UTC
-* Number of recursive dependencies: 94
-
-Run `revdep_details(,"dtwclust")` for more info
-
-
-
-## In both
-
-* checking whether package ‘dtwclust’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dtwclust/new/dtwclust.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘dtwclust’ ...
-** package ‘dtwclust’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/utils.cpp -o utils/utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/R-utils.cpp -o utils/R-utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/ParallelWorker.cpp -o utils/ParallelWorker.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/KahanSummer.cpp -o utils/KahanSummer.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/UndirectedGraph.cpp -o utils/UndirectedGraph.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/envelope.cpp -o utils/envelope.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c centroids/dba.cpp -o centroids/dba.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c centroids/sdtw-cent.cpp -o centroids/sdtw-cent.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/distmat-loop.cpp -o distmat/distmat-loop.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/distmat.cpp -o distmat/distmat.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/fillers.cpp -o distmat/fillers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/dtw-lb.cpp -o distmat/dtw-lb.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c init.cpp -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/dtw-basic.cpp -o distances/dtw-basic.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/R-gateways.cpp -o distances/R-gateways.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/soft-dtw.cpp -o distances/soft-dtw.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/calculators.cpp -o distances/calculators.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/logGAK.cpp -o distances/logGAK.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/lbk.cpp -o distances/lbk.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/lbi.cpp -o distances/lbi.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c tadpole/tadpole.cpp -o tadpole/tadpole.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dtwclust.so ./utils/utils.o ./utils/R-utils.o ./utils/ParallelWorker.o ./utils/KahanSummer.o ./utils/UndirectedGraph.o ./utils/envelope.o ./centroids/dba.o ./centroids/sdtw-cent.o ./distmat/distmat-loop.o ./distmat/distmat.o ./distmat/fillers.o ./distmat/dtw-lb.o ./init.o ./distances/dtw-basic.o ./distances/R-gateways.o ./distances/soft-dtw.o ./distances/calculators.o ./distances/logGAK.o ./distances/lbk.o ./distances/lbi.o ./tadpole/tadpole.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dtwclust.so] Error 1
-ERROR: compilation failed for package ‘dtwclust’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dtwclust/new/dtwclust.Rcheck/dtwclust’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘dtwclust’ ...
-** package ‘dtwclust’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/utils.cpp -o utils/utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/R-utils.cpp -o utils/R-utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/ParallelWorker.cpp -o utils/ParallelWorker.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/KahanSummer.cpp -o utils/KahanSummer.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/UndirectedGraph.cpp -o utils/UndirectedGraph.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/envelope.cpp -o utils/envelope.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c centroids/dba.cpp -o centroids/dba.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c centroids/sdtw-cent.cpp -o centroids/sdtw-cent.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/distmat-loop.cpp -o distmat/distmat-loop.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/distmat.cpp -o distmat/distmat.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/fillers.cpp -o distmat/fillers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/dtw-lb.cpp -o distmat/dtw-lb.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c init.cpp -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/dtw-basic.cpp -o distances/dtw-basic.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/R-gateways.cpp -o distances/R-gateways.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/soft-dtw.cpp -o distances/soft-dtw.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/calculators.cpp -o distances/calculators.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/logGAK.cpp -o distances/logGAK.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/lbk.cpp -o distances/lbk.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/lbi.cpp -o distances/lbi.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c tadpole/tadpole.cpp -o tadpole/tadpole.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dtwclust.so ./utils/utils.o ./utils/R-utils.o ./utils/ParallelWorker.o ./utils/KahanSummer.o ./utils/UndirectedGraph.o ./utils/envelope.o ./centroids/dba.o ./centroids/sdtw-cent.o ./distmat/distmat-loop.o ./distmat/distmat.o ./distmat/fillers.o ./distmat/dtw-lb.o ./init.o ./distances/dtw-basic.o ./distances/R-gateways.o ./distances/soft-dtw.o ./distances/calculators.o ./distances/logGAK.o ./distances/lbk.o ./distances/lbi.o ./tadpole/tadpole.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dtwclust.so] Error 1
-ERROR: compilation failed for package ‘dtwclust’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dtwclust/old/dtwclust.Rcheck/dtwclust’
-
-```
-# DuoClustering2018
-
-
-
-* Version: 1.6.0
-* Source code: https://github.com/cran/DuoClustering2018
-* Date/Publication: 2020-05-07
-* Number of recursive dependencies: 158
-
-Run `revdep_details(,"DuoClustering2018")` for more info
-
-
-
-## Newly broken
-
-* R CMD check timed out
-
-
-* checking R code for possible problems ... NOTE
- ```
- ...
- plot_timing: no visible binding for global variable ‘dataset’
- plot_timing: no visible binding for global variable ‘method’
- plot_timing: no visible binding for global variable ‘run’
- plot_timing: no visible binding for global variable ‘k’
- plot_timing: no visible binding for global variable ‘cluster’
- plot_timing: no visible binding for global variable ‘trueclass’
- plot_timing: no visible binding for global variable ‘est_k’
- plot_timing: no visible binding for global variable ‘elapsed’
- plot_timing: no visible binding for global variable ‘sce’
- plot_timing: no visible binding for global variable ‘filtering’
- plot_timing: no visible binding for global variable ‘truenclust’
- plot_timing: no visible binding for global variable ‘median.elapsed’
- plot_timing: no visible binding for global variable ‘med.t’
- plot_timing: no visible binding for global variable ‘norm.time’
- plot_timing: no visible binding for global variable ‘medianelapsed’
- Undefined global functions or variables:
- ARI ari.stab cell cluster data.wide dataset ds ds.norm elapsed
- entropy est_k estnclust filtering k k_diff med.t medARI
- median.elapsed median.stability medianARI medianelapsed method
- norm.time run s s.norm s.true s.true.norm sce stability trueclass
- truenclust
- ```
-
-## Newly fixed
-
-* checking whether package ‘DuoClustering2018’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DuoClustering2018/old/DuoClustering2018.Rcheck/00install.out’ for details.
- ```
-
-# dynfrail
-
-
-
-* Version: 0.5.2
-* Source code: https://github.com/cran/dynfrail
-* Date/Publication: 2017-10-30 10:11:49 UTC
-* Number of recursive dependencies: 75
-
-Run `revdep_details(,"dynfrail")` for more info
-
-
-
-## In both
-
-* checking whether package ‘dynfrail’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dynfrail/new/dynfrail.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘dynfrail’ ...
-** package ‘dynfrail’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c estep_new.cpp -o estep_new.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dynfrail.so RcppExports.o estep_new.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dynfrail.so] Error 1
-ERROR: compilation failed for package ‘dynfrail’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dynfrail/new/dynfrail.Rcheck/dynfrail’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘dynfrail’ ...
-** package ‘dynfrail’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c estep_new.cpp -o estep_new.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dynfrail.so RcppExports.o estep_new.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [dynfrail.so] Error 1
-ERROR: compilation failed for package ‘dynfrail’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dynfrail/old/dynfrail.Rcheck/dynfrail’
-
-```
-# ENCODExplorer
-
-
-
-* Version: 2.14.0
-* Source code: https://github.com/cran/ENCODExplorer
-* BugReports: https://github.com/CharlesJB/ENCODExplorer/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 96
-
-Run `revdep_details(,"ENCODExplorer")` for more info
-
-
-
-## In both
-
-* R CMD check timed out
-
-
-* checking R code for possible problems ... NOTE
- ```
- createDesign: no visible binding for global variable ‘file_format’
- createDesign: no visible binding for global variable ‘status’
- createDesign: no visible binding for global variable ‘accession’
- createDesign: no visible binding for global variable ‘controls’
- createDesign : get_ctrl_design: no visible binding for global variable
- ‘accession’
- createDesign : get_ctrl_design: no visible binding for global variable
- ‘href’
- createDesign: no visible global function definition for ‘.’
- createDesign: no visible binding for global variable ‘href’
- createDesign: no visible binding for global variable ‘Experiment’
- createDesign: no visible binding for global variable ‘Value’
- downloadEncode: no visible binding for global variable ‘file_accession’
- downloadEncode: no visible binding for global variable ‘file_format’
- downloadEncode: no visible binding for global variable ‘accession’
- shinyEncode: no visible binding for global variable ‘ui’
- shinyEncode: no visible binding for global variable ‘server’
- Undefined global functions or variables:
- . Experiment Value accession controls file_accession file_format href
- server status ui
- ```
-
-# exuber
-
-
-
-* Version: 0.4.0
-* Source code: https://github.com/cran/exuber
-* URL: https://github.com/kvasilopoulos/exuber
-* BugReports: https://github.com/kvasilopoulos/exuber/issues
-* Date/Publication: 2020-05-04 17:10:08 UTC
-* Number of recursive dependencies: 91
-
-Run `revdep_details(,"exuber")` for more info
-
-
-
-## In both
-
-* checking whether package ‘exuber’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/exuber/new/exuber.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘exuberdata’
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘exuber’ ...
-** package ‘exuber’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rls_gsadf.cpp -o rls_gsadf.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o exuber.so RcppExports.o rls_gsadf.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [exuber.so] Error 1
-ERROR: compilation failed for package ‘exuber’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/exuber/new/exuber.Rcheck/exuber’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘exuber’ ...
-** package ‘exuber’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rls_gsadf.cpp -o rls_gsadf.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o exuber.so RcppExports.o rls_gsadf.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [exuber.so] Error 1
-ERROR: compilation failed for package ‘exuber’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/exuber/old/exuber.Rcheck/exuber’
-
-```
-# fable
-
-
-
-* Version: 0.2.0
-* Source code: https://github.com/cran/fable
-* URL: https://fable.tidyverts.org, https://github.com/tidyverts/fable
-* BugReports: https://github.com/tidyverts/fable/issues
-* Date/Publication: 2020-04-22 13:12:08 UTC
-* Number of recursive dependencies: 99
-
-Run `revdep_details(,"fable")` for more info
-
-
-
-## In both
-
-* checking whether package ‘fable’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fable/new/fable.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘fable’ ...
-** package ‘fable’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c etsTargetFunction.cpp -o etsTargetFunction.o
-In file included from etsTargetFunction.cpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/RcppCommon.h:128:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/Rcpp/exceptions.h:112:53: warning: all paths through this function will call itself [-Winfinite-recursion]
- inline void warning(const std::string& message) { // #nocov start
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c etsTargetFunctionWrapper.cpp -o etsTargetFunctionWrapper.o
-In file included from etsTargetFunctionWrapper.cpp:10:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/RcppCommon.h:128:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/Rcpp/exceptions.h:112:53: warning: all paths through this function will call itself [-Winfinite-recursion]
- inline void warning(const std::string& message) { // #nocov start
- ^
-1 warning generated.
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include' -I/usr/local/include -fPIC -O3 -c etscalc.c -o etscalc.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include' -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fable.so etsTargetFunction.o etsTargetFunctionWrapper.o etscalc.o registerDynamicSymbol.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [fable.so] Error 1
-ERROR: compilation failed for package ‘fable’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fable/new/fable.Rcheck/fable’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘fable’ ...
-** package ‘fable’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c etsTargetFunction.cpp -o etsTargetFunction.o
-In file included from etsTargetFunction.cpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:128:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/exceptions.h:112:53: warning: all paths through this function will call itself [-Winfinite-recursion]
- inline void warning(const std::string& message) { // #nocov start
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c etsTargetFunctionWrapper.cpp -o etsTargetFunctionWrapper.o
-In file included from etsTargetFunctionWrapper.cpp:10:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:128:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/exceptions.h:112:53: warning: all paths through this function will call itself [-Winfinite-recursion]
- inline void warning(const std::string& message) { // #nocov start
- ^
-1 warning generated.
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c etscalc.c -o etscalc.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fable.so etsTargetFunction.o etsTargetFunctionWrapper.o etscalc.o registerDynamicSymbol.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [fable.so] Error 1
-ERROR: compilation failed for package ‘fable’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fable/old/fable.Rcheck/fable’
-
-```
-# fastLink
-
-
-
-* Version: 0.6.0
-* Source code: https://github.com/cran/fastLink
-* BugReports: https://github.com/kosukeimai/fastLink/issues
-* Date/Publication: 2020-04-29 17:00:03 UTC
-* Number of recursive dependencies: 72
-
-Run `revdep_details(,"fastLink")` for more info
-
-
-
-## In both
-
-* checking whether package ‘fastLink’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fastLink/new/fastLink.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘fastLink’ ...
-** package ‘fastLink’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -O3 -c fastLink_init.c -o fastLink_init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c helpers.cpp -o helpers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c m_func_cpp.cpp -o m_func_cpp.o
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fastLink.so RcppExports.o fastLink_init.o helpers.o m_func_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [fastLink.so] Error 1
-ERROR: compilation failed for package ‘fastLink’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fastLink/new/fastLink.Rcheck/fastLink’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘fastLink’ ...
-** package ‘fastLink’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -O3 -c fastLink_init.c -o fastLink_init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c helpers.cpp -o helpers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c m_func_cpp.cpp -o m_func_cpp.o
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from m_func_cpp.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fastLink.so RcppExports.o fastLink_init.o helpers.o m_func_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [fastLink.so] Error 1
-ERROR: compilation failed for package ‘fastLink’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fastLink/old/fastLink.Rcheck/fastLink’
-
-```
-# flowWorkspace
-
-
-
-* Version: 4.0.0
-* Source code: https://github.com/cran/flowWorkspace
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 113
-
-Run `revdep_details(,"flowWorkspace")` for more info
-
-
-
-## In both
-
-* checking whether package ‘flowWorkspace’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/new/flowWorkspace.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘flowWorkspace’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_API.cpp -o R_API.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_GatingSet.cpp -o R_GatingSet.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:4:
-In file included from ./../inst/include/flowWorkspace.h:6:
-In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp.h:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- delete obj;
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here
- void Finalizer(T*) = standard_delete_finalizer,
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c cytoframeAPI.cpp -o cytoframeAPI.o
-In file included from cytoframeAPI.cpp:2:
-In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp.h:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- delete obj;
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here
- void Finalizer(T*) = standard_delete_finalizer,
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c cytosetAPI.cpp -o cytosetAPI.o
-In file included from cytosetAPI.cpp:2:
-In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp.h:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- delete obj;
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here
- void Finalizer(T*) = standard_delete_finalizer,
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getDescendants.cpp -o getDescendants.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getPopStats.cpp -o getPopStats.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getSingleCellExpression.cpp -o getSingleCellExpression.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c h5_error_r_handler.cpp -o h5_error_r_handler.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c setCounts.cpp -o setCounts.o
-mkdir -p "/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/new/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib"
-ar rs "/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/new/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib/libflowWorkspace.a" R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o
-ar: creating archive /Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/new/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib/libflowWorkspace.a
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowWorkspace.so R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [flowWorkspace.so] Error 1
-ERROR: compilation failed for package ‘flowWorkspace’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/new/flowWorkspace.Rcheck/flowWorkspace’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘flowWorkspace’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_API.cpp -o R_API.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_GatingSet.cpp -o R_GatingSet.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:4:
-In file included from ./../inst/include/flowWorkspace.h:6:
-In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- delete obj;
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here
- void Finalizer(T*) = standard_delete_finalizer,
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c cytoframeAPI.cpp -o cytoframeAPI.o
-In file included from cytoframeAPI.cpp:2:
-In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- delete obj;
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here
- void Finalizer(T*) = standard_delete_finalizer,
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c cytosetAPI.cpp -o cytosetAPI.o
-In file included from cytosetAPI.cpp:2:
-In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
- delete obj;
- ^
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here
- void Finalizer(T*) = standard_delete_finalizer,
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getDescendants.cpp -o getDescendants.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getPopStats.cpp -o getPopStats.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getSingleCellExpression.cpp -o getSingleCellExpression.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c h5_error_r_handler.cpp -o h5_error_r_handler.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c setCounts.cpp -o setCounts.o
-mkdir -p "/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/old/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib"
-ar rs "/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/old/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib/libflowWorkspace.a" R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o
-ar: creating archive /Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/old/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib/libflowWorkspace.a
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowWorkspace.so R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [flowWorkspace.so] Error 1
-ERROR: compilation failed for package ‘flowWorkspace’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/old/flowWorkspace.Rcheck/flowWorkspace’
-
-```
-# fourierin
-
-
-
-* Version: 0.2.4
-* Source code: https://github.com/cran/fourierin
-* URL: http://github.com/gbasulto/fourierin
-* BugReports: https://github.com/gbasulto/fourierin/issues
-* Date/Publication: 2019-04-07 12:22:43 UTC
-* Number of recursive dependencies: 67
-
-Run `revdep_details(,"fourierin")` for more info
-
-
-
-## In both
-
-* checking whether package ‘fourierin’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fourierin/new/fourierin.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘fourierin’ ...
-** package ‘fourierin’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_1d.cpp -o fourierin_1d.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_2d.cpp -o fourierin_2d.o
-fourierin_2d.cpp:160:10: warning: local variable 'out' will be copied despite being returned by name [-Wreturn-std-move]
- return out;
- ^~~
-fourierin_2d.cpp:160:10: note: call 'std::move' explicitly to avoid copying
- return out;
- ^~~
- std::move(out)
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_1d.cpp -o fourierin_cx_1d.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_2d.cpp -o fourierin_cx_2d.o
-fourierin_cx_2d.cpp:157:10: warning: local variable 'out' will be copied despite being returned by name [-Wreturn-std-move]
- return out;
- ^~~
-fourierin_cx_2d.cpp:157:10: note: call 'std::move' explicitly to avoid copying
- return out;
- ^~~
- std::move(out)
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_nd.cpp -o fourierin_cx_nd.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fourierin.so RcppExports.o fourierin_1d.o fourierin_2d.o fourierin_cx_1d.o fourierin_cx_2d.o fourierin_cx_nd.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [fourierin.so] Error 1
-ERROR: compilation failed for package ‘fourierin’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fourierin/new/fourierin.Rcheck/fourierin’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘fourierin’ ...
-** package ‘fourierin’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_1d.cpp -o fourierin_1d.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_2d.cpp -o fourierin_2d.o
-fourierin_2d.cpp:160:10: warning: local variable 'out' will be copied despite being returned by name [-Wreturn-std-move]
- return out;
- ^~~
-fourierin_2d.cpp:160:10: note: call 'std::move' explicitly to avoid copying
- return out;
- ^~~
- std::move(out)
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_1d.cpp -o fourierin_cx_1d.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_2d.cpp -o fourierin_cx_2d.o
-fourierin_cx_2d.cpp:157:10: warning: local variable 'out' will be copied despite being returned by name [-Wreturn-std-move]
- return out;
- ^~~
-fourierin_cx_2d.cpp:157:10: note: call 'std::move' explicitly to avoid copying
- return out;
- ^~~
- std::move(out)
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_nd.cpp -o fourierin_cx_nd.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fourierin.so RcppExports.o fourierin_1d.o fourierin_2d.o fourierin_cx_1d.o fourierin_cx_2d.o fourierin_cx_nd.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [fourierin.so] Error 1
-ERROR: compilation failed for package ‘fourierin’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fourierin/old/fourierin.Rcheck/fourierin’
-
-```
-# gap
-
-
-
-* Version: 1.2.2
-* Source code: https://github.com/cran/gap
-* URL: https://github.com/jinghuazhao/R
-* BugReports: https://github.com/jinghuazhao/R/issues
-* Date/Publication: 2020-02-02 15:10:02 UTC
-* Number of recursive dependencies: 142
-
-Run `revdep_details(,"gap")` for more info
-
-
-
-## In both
-
-* checking whether package ‘gap’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gap/new/gap.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘regress’
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘gap’ ...
-** package ‘gap’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c 2k.c -o 2k.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c 2ld.c -o 2ld.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c cline.c -o cline.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gcontrol_c.c -o gcontrol_c.o
-gcontrol_c.c:757:53: warning: if statement has empty body [-Wempty-body]
- if(i>=*burn && j==0) /*printf("%14.9f \n",p)*/;
- ^
-gcontrol_c.c:757:53: note: put the semicolon on a separate line to silence this warning
-1 warning generated.
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gcx.c -o gcx.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gif_c.c -o gif_c.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hap_c.c -o hap_c.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hwe.hardy.c -o hwe.hardy.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c kin.morgan.c -o kin.morgan.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c makeped_c.c -o makeped_c.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mia.c -o mia.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c muvar.c -o muvar.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c package_native_routine_registration_skeleton.c -o package_native_routine_registration_skeleton.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c pfc.f -o pfc.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c pfc.sim.f -o pfc.sim.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pgc_c.c -o pgc_c.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c whscore.c -o whscore.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gap.so 2k.o 2ld.o cline.o gcontrol_c.o gcx.o gif_c.o hap_c.o hwe.hardy.o kin.morgan.o makeped_c.o mia.o muvar.o package_native_routine_registration_skeleton.o pfc.o pfc.sim.o pgc_c.o whscore.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [gap.so] Error 1
-ERROR: compilation failed for package ‘gap’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gap/new/gap.Rcheck/gap’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘gap’ ...
-** package ‘gap’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c 2k.c -o 2k.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c 2ld.c -o 2ld.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c cline.c -o cline.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gcontrol_c.c -o gcontrol_c.o
-gcontrol_c.c:757:53: warning: if statement has empty body [-Wempty-body]
- if(i>=*burn && j==0) /*printf("%14.9f \n",p)*/;
- ^
-gcontrol_c.c:757:53: note: put the semicolon on a separate line to silence this warning
-1 warning generated.
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gcx.c -o gcx.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gif_c.c -o gif_c.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hap_c.c -o hap_c.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hwe.hardy.c -o hwe.hardy.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c kin.morgan.c -o kin.morgan.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c makeped_c.c -o makeped_c.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mia.c -o mia.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c muvar.c -o muvar.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c package_native_routine_registration_skeleton.c -o package_native_routine_registration_skeleton.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c pfc.f -o pfc.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c pfc.sim.f -o pfc.sim.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pgc_c.c -o pgc_c.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c whscore.c -o whscore.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gap.so 2k.o 2ld.o cline.o gcontrol_c.o gcx.o gif_c.o hap_c.o hwe.hardy.o kin.morgan.o makeped_c.o mia.o muvar.o package_native_routine_registration_skeleton.o pfc.o pfc.sim.o pgc_c.o whscore.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [gap.so] Error 1
-ERROR: compilation failed for package ‘gap’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gap/old/gap.Rcheck/gap’
-
-```
-# GAPGOM
-
-
-
-* Version:
-* Source code: ???
-* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr
-* BugReports: https://github.com/tidyverse/dplyr/issues
-* Number of recursive dependencies: 0
-
-Run `revdep_details(,"")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
- There is a binary version available but the source version is later:
- binary source needs_compilation
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
-
-
-installing the source packages ‘org.Ag.eg.db’, ‘org.At.tair.db’, ‘org.Bt.eg.db’, ‘org.Ce.eg.db’, ‘org.Cf.eg.db’, ‘org.Dr.eg.db’, ‘org.EcK12.eg.db’, ‘org.EcSakai.eg.db’, ‘org.Mmu.eg.db’, ‘org.Pf.plasmo.db’, ‘org.Pt.eg.db’, ‘org.Sc.sgd.db’, ‘org.Ss.eg.db’, ‘org.Xl.eg.db’
-
-
-
-```
-### CRAN
-
-```
-
- There is a binary version available but the source version is later:
- binary source needs_compilation
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
-
-
-installing the source packages ‘org.Ag.eg.db’, ‘org.At.tair.db’, ‘org.Bt.eg.db’, ‘org.Ce.eg.db’, ‘org.Cf.eg.db’, ‘org.Dr.eg.db’, ‘org.EcK12.eg.db’, ‘org.EcSakai.eg.db’, ‘org.Mmu.eg.db’, ‘org.Pf.plasmo.db’, ‘org.Pt.eg.db’, ‘org.Sc.sgd.db’, ‘org.Ss.eg.db’, ‘org.Xl.eg.db’
-
-
-
-```
-# gastempt
-
-
-
-* Version: 0.5.0
-* Source code: https://github.com/cran/gastempt
-* URL: http://github.com/dmenne/gastempt
-* BugReports: http://github.com/dmenne/gastempt/issues
-* Date/Publication: 2020-05-01 10:10:02 UTC
-* Number of recursive dependencies: 87
-
-Run `revdep_details(,"gastempt")` for more info
-
-
-
-## In both
-
-* checking whether package ‘gastempt’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gastempt/new/gastempt.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘gastempt’ ...
-** package ‘gastempt’ successfully unpacked and MD5 sums checked
-** using staged installation
-Error in loadNamespace(name) : there is no package called ‘rstantools’
-Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: configuration failed for package ‘gastempt’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gastempt/new/gastempt.Rcheck/gastempt’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘gastempt’ ...
-** package ‘gastempt’ successfully unpacked and MD5 sums checked
-** using staged installation
-Error in loadNamespace(name) : there is no package called ‘rstantools’
-Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: configuration failed for package ‘gastempt’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gastempt/old/gastempt.Rcheck/gastempt’
-
-```
-# GenomicMating
-
-
-
-* Version: 2.0
-* Source code: https://github.com/cran/GenomicMating
-* Date/Publication: 2018-07-01 23:00:03 UTC
-* Number of recursive dependencies: 92
-
-Run `revdep_details(,"GenomicMating")` for more info
-
-
-
-## In both
-
-* checking whether package ‘GenomicMating’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/GenomicMating/new/GenomicMating.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘GenomicMating’ ...
-** package ‘GenomicMating’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c MatingPrograms.cpp -o MatingPrograms.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GenomicMating.so MatingPrograms.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [GenomicMating.so] Error 1
-ERROR: compilation failed for package ‘GenomicMating’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/GenomicMating/new/GenomicMating.Rcheck/GenomicMating’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘GenomicMating’ ...
-** package ‘GenomicMating’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c MatingPrograms.cpp -o MatingPrograms.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GenomicMating.so MatingPrograms.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [GenomicMating.so] Error 1
-ERROR: compilation failed for package ‘GenomicMating’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/GenomicMating/old/GenomicMating.Rcheck/GenomicMating’
-
-```
-# geodiv
-
-
-
-* Version: 0.1.1
-* Source code: https://github.com/cran/geodiv
-* Date/Publication: 2020-02-13 14:40:08 UTC
-* Number of recursive dependencies: 75
-
-Run `revdep_details(,"geodiv")` for more info
-
-
-
-## In both
-
-* checking whether package ‘geodiv’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/geodiv/new/geodiv.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘geodiv’ ...
-** package ‘geodiv’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sfd.cpp -o sfd.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o geodiv.so RcppExports.o sfd.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [geodiv.so] Error 1
-ERROR: compilation failed for package ‘geodiv’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/geodiv/new/geodiv.Rcheck/geodiv’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘geodiv’ ...
-** package ‘geodiv’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sfd.cpp -o sfd.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o geodiv.so RcppExports.o sfd.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [geodiv.so] Error 1
-ERROR: compilation failed for package ‘geodiv’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/geodiv/old/geodiv.Rcheck/geodiv’
-
-```
-# GEOquery
-
-
-
-* Version: 2.56.0
-* Source code: https://github.com/cran/GEOquery
-* URL: https://github.com/seandavi/GEOquery
-* BugReports: https://github.com/seandavi/GEOquery/issues/new
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 65
-
-Run `revdep_details(,"GEOquery")` for more info
-
-
-
-## In both
-
-* R CMD check timed out
-
-
-* checking installed package size ... NOTE
- ```
- installed size is 13.9Mb
- sub-directories of 1Mb or more:
- extdata 12.8Mb
- ```
-
-* checking whether the namespace can be loaded with stated dependencies ... NOTE
- ```
- Warning: no function found corresponding to methods exports from ‘GEOquery’ for: ‘show’
-
- A namespace must be able to be loaded with just the base namespace
- loaded: otherwise if the namespace gets loaded by a saved object, the
- session will be unable to start.
-
- Probably some imports need to be declared in the NAMESPACE file.
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘httr’
- All declared Imports should be used.
- Package in Depends field not imported from: ‘methods’
- These packages need to be imported from (in the NAMESPACE file)
- for when this namespace is loaded but not attached.
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- ...
- fastTabRead: no visible global function definition for ‘read.delim’
- parseGDS: no visible global function definition for ‘new’
- parseGSE: no visible global function definition for ‘new’
- parseGSEMatrix: no visible global function definition for ‘read.table’
- parseGSEMatrix: no visible global function definition for ‘new’
- parseGSEMatrix: no visible binding for global variable ‘.’
- parseGSEMatrix: no visible binding for global variable
- ‘characteristics’
- parseGSEMatrix: no visible binding for global variable ‘kvpair’
- parseGSEMatrix: no visible binding for global variable ‘accession’
- parseGSEMatrix: no visible binding for global variable ‘k’
- parseGSEMatrix: no visible binding for global variable ‘v’
- parseGSEMatrix: no visible global function definition for ‘as’
- Undefined global functions or variables:
- . MA accession as characteristics k kvpair new read.delim read.table
- v
- Consider adding
- importFrom("methods", "as", "new")
- importFrom("utils", "read.delim", "read.table")
- to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
- contains 'methods').
- ```
-
-# gespeR
-
-
-
-* Version: 1.20.0
-* Source code: https://github.com/cran/gespeR
-* URL: http://www.cbg.ethz.ch/software/gespeR
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 118
-
-Run `revdep_details(,"gespeR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘gespeR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gespeR/new/gespeR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘gespeR’ ...
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘prada’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘gespeR’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gespeR/new/gespeR.Rcheck/gespeR’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘gespeR’ ...
-** using staged installation
-** R
-** data
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘prada’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘gespeR’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gespeR/old/gespeR.Rcheck/gespeR’
-
-```
-# goldi
-
-
-
-* Version: 1.0.1
-* Source code: https://github.com/cran/goldi
-* URL: https://github.com/Chris1221/goldi
-* BugReports: https://github.com/Chris1221/goldi/issues
-* Date/Publication: 2017-06-28 15:06:20 UTC
-* Number of recursive dependencies: 70
-
-Run `revdep_details(,"goldi")` for more info
-
-
-
-## In both
-
-* checking whether package ‘goldi’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/goldi/new/goldi.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘goldi’ ...
-** package ‘goldi’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c match.cpp -o match.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o goldi.so RcppExports.o match.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [goldi.so] Error 1
-ERROR: compilation failed for package ‘goldi’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/goldi/new/goldi.Rcheck/goldi’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘goldi’ ...
-** package ‘goldi’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c match.cpp -o match.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o goldi.so RcppExports.o match.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [goldi.so] Error 1
-ERROR: compilation failed for package ‘goldi’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/goldi/old/goldi.Rcheck/goldi’
-
-```
-# graphicalVAR
-
-
-
-* Version: 0.2.3
-* Source code: https://github.com/cran/graphicalVAR
-* Date/Publication: 2020-04-09 14:00:06 UTC
-* Number of recursive dependencies: 115
-
-Run `revdep_details(,"graphicalVAR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘graphicalVAR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/graphicalVAR/new/graphicalVAR.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘graphicalVAR’ ...
-** package ‘graphicalVAR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Rothmana.cpp -o Rothmana.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graphicalVAR.so RcppExports.o Rothmana.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [graphicalVAR.so] Error 1
-ERROR: compilation failed for package ‘graphicalVAR’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/graphicalVAR/new/graphicalVAR.Rcheck/graphicalVAR’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘graphicalVAR’ ...
-** package ‘graphicalVAR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Rothmana.cpp -o Rothmana.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graphicalVAR.so RcppExports.o Rothmana.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [graphicalVAR.so] Error 1
-ERROR: compilation failed for package ‘graphicalVAR’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/graphicalVAR/old/graphicalVAR.Rcheck/graphicalVAR’
-
-```
-# grasp2db
-
-
-
-* Version: 1.1.0
-* Source code: https://github.com/cran/grasp2db
-* Number of recursive dependencies: 118
-
-Run `revdep_details(,"grasp2db")` for more info
-
-
-
-## In both
-
-* R CMD check timed out
-
-
-* checking for missing documentation entries ... WARNING
- ```
- Undocumented code objects:
- ‘GRASP2’ ‘checkAnti’ ‘getJoinCompatible’
- Undocumented data sets:
- ‘mml10p_nox’ ‘uniqueGexNames2.0’ ‘uniquePPDnames2.0’
- All user-level objects in a package should have documentation entries.
- See chapter ‘Writing R documentation files’ in the ‘Writing R
- Extensions’ manual.
- ```
-
-* checking data for non-ASCII characters ... WARNING
- ```
- Warning: found non-ASCII string
- 'Behet's disease' in object 'uniquePPDnames2.0'
- ```
-
-* checking data for ASCII and uncompressed saves ... WARNING
- ```
-
- Note: significantly better compression could be obtained
- by using R CMD build --resave-data
- old_size new_size compress
- mml10p_nox.rda 7.1Mb 2.8Mb xz
- uniquePPDnames2.0.rda 17Kb 15Kb bzip2
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package which this enhances but not available for checking: ‘AnnotationHubData’
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 7.6Mb
- sub-directories of 1Mb or more:
- data 7.1Mb
- ```
-
-* checking DESCRIPTION meta-information ... NOTE
- ```
- License components with restrictions not permitted:
- Artistic-2.0 + file LICENSE
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- .grasp2ToAnnotationHub: no visible global function definition for
- ‘outputFile’
- checkAnti: no visible binding for global variable ‘chr_hg19’
- getJoinCompatible: no visible binding for global variable ‘gwrngs19’
- Undefined global functions or variables:
- chr_hg19 gwrngs19 outputFile
- ```
-
-# heatwaveR
-
-
-
-* Version: 0.4.2
-* Source code: https://github.com/cran/heatwaveR
-* URL: https://robwschlegel.github.io/heatwaveR/index.html, https://github.com/robwschlegel/heatwaveR
-* BugReports: https://github.com/robwschlegel/heatwaveR/issues
-* Date/Publication: 2019-12-01 21:30:06 UTC
-* Number of recursive dependencies: 135
-
-Run `revdep_details(,"heatwaveR")` for more info
-
-
-
-## In both
-
-* checking whether package ‘heatwaveR’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/heatwaveR/new/heatwaveR.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘ggpubr’
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘heatwaveR’ ...
-** package ‘heatwaveR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c clim_calc.cpp -o clim_calc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o heatwaveR.so RcppExports.o clim_calc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [heatwaveR.so] Error 1
-ERROR: compilation failed for package ‘heatwaveR’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/heatwaveR/new/heatwaveR.Rcheck/heatwaveR’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘heatwaveR’ ...
-** package ‘heatwaveR’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c clim_calc.cpp -o clim_calc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o heatwaveR.so RcppExports.o clim_calc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [heatwaveR.so] Error 1
-ERROR: compilation failed for package ‘heatwaveR’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/heatwaveR/old/heatwaveR.Rcheck/heatwaveR’
-
-```
-# ideal
-
-
-
-* Version: 1.12.0
-* Source code: https://github.com/cran/ideal
-* URL: https://github.com/federicomarini/ideal, https://federicomarini.github.io/ideal/
-* BugReports: https://github.com/federicomarini/ideal/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 197
-
-Run `revdep_details(,"ideal")` for more info
-
-
-
-## In both
-
-* checking whether package ‘ideal’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ideal/new/ideal.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg38.knownGene’
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ideal’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-
-groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘geneLenDataBase’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘ideal’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ideal/new/ideal.Rcheck/ideal’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ideal’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-
-groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘geneLenDataBase’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘ideal’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ideal/old/ideal.Rcheck/ideal’
-
-```
-# idefix
-
-
-
-* Version: 0.4.3
-* Source code: https://github.com/cran/idefix
-* URL: https://github.com/traets/idefix
-* Date/Publication: 2020-04-07 14:40:05 UTC
-* Number of recursive dependencies: 72
-
-Run `revdep_details(,"idefix")` for more info
-
-
-
-## In both
-
-* checking whether package ‘idefix’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/idefix/new/idefix.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘idefix’ ...
-** package ‘idefix’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c InfoDes_cpp.cpp -o InfoDes_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c det_cpp.cpp -o det_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o idefix.so InfoDes_cpp.o RcppExports.o det_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [idefix.so] Error 1
-ERROR: compilation failed for package ‘idefix’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/idefix/new/idefix.Rcheck/idefix’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘idefix’ ...
-** package ‘idefix’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c InfoDes_cpp.cpp -o InfoDes_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c det_cpp.cpp -o det_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o idefix.so InfoDes_cpp.o RcppExports.o det_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [idefix.so] Error 1
-ERROR: compilation failed for package ‘idefix’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/idefix/old/idefix.Rcheck/idefix’
-
-```
-# infercnv
-
-
-
-* Version: 1.4.0
-* Source code: https://github.com/cran/infercnv
-* URL: https://github.com/broadinstitute/inferCNV/wiki
-* BugReports: https://github.com/broadinstitute/inferCNV/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 122
-
-Run `revdep_details(,"infercnv")` for more info
-
-
-
-## In both
-
-* checking whether package ‘infercnv’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/infercnv/new/infercnv.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘infercnv’ ...
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so
- Reason: image not found
-Execution halted
-ERROR: lazy loading failed for package ‘infercnv’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/infercnv/new/infercnv.Rcheck/infercnv’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘infercnv’ ...
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so
- Reason: image not found
-Execution halted
-ERROR: lazy loading failed for package ‘infercnv’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/infercnv/old/infercnv.Rcheck/infercnv’
-
-```
-# iRF
-
-
-
-* Version: 2.0.0
-* Source code: https://github.com/cran/iRF
-* URL: https://arxiv.org/abs/1706.08457
-* Date/Publication: 2017-07-26 04:57:45 UTC
-* Number of recursive dependencies: 61
-
-Run `revdep_details(,"iRF")` for more info
-
-
-
-## In both
-
-* checking whether package ‘iRF’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/iRF/new/iRF.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘iRF’ ...
-** package ‘iRF’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c ExportedFunctionsRIT.cpp -o ExportedFunctionsRIT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c classTree.c -o classTree.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c processNodes.cpp -o processNodes.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c regTree.c -o regTree.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c regrf.c -o regrf.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c rf.c -o rf.o
-rf.c:492:17: warning: expression result unused [-Wunused-value]
- + nrightimp[cl[n] - 1]++;
- ^ ~~~~~~~~~~~~~~~~~~~~~~
-1 warning generated.
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rfsub.f -o rfsub.o
-f951: Warning: Nonconforming tab character in column 1 of line 234 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 238 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 242 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 245 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 246 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 556 [-Wtabs]
-rfsub.f:203:22:
-
- 203 | end if
- | 1
-Warning: Nonconforming tab character at (1) [-Wtabs]
-rfsub.f:283:35:
-
- 283 | totprob = totprob - mprob
- | 1
-Warning: Nonconforming tab character at (1) [-Wtabs]
-rfsub.f:122:35:
-
- 122 | bestsplit(kbuild) = dble(a(msplit,int(best)))
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rfsub.f:123:39:
-
- 123 | bestsplitnext(kbuild) = dble(a(msplit,int(best)+1))
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rfsub.f:125:35:
-
- 125 | bestsplit(kbuild) = best
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rfsub.f:237:16:
-
- 237 | integer jj, subsetvar(mcard)
- | 1
-Warning: Unused variable 'jj' declared at (1) [-Wunused-variable]
-rfsub.f:535:33:
-
- 535 | integer ii, tmp, j, nn, dum
- | 1
-Warning: Unused variable 'dum' declared at (1) [-Wunused-variable]
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c rfutils.c -o rfutils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iRF.so ExportedFunctionsRIT.o RcppExports.o classTree.o init.o processNodes.o regTree.o regrf.o rf.o rfsub.o rfutils.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [iRF.so] Error 1
-ERROR: compilation failed for package ‘iRF’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/iRF/new/iRF.Rcheck/iRF’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘iRF’ ...
-** package ‘iRF’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c ExportedFunctionsRIT.cpp -o ExportedFunctionsRIT.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c classTree.c -o classTree.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c processNodes.cpp -o processNodes.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c regTree.c -o regTree.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c regrf.c -o regrf.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c rf.c -o rf.o
-rf.c:492:17: warning: expression result unused [-Wunused-value]
- + nrightimp[cl[n] - 1]++;
- ^ ~~~~~~~~~~~~~~~~~~~~~~
-1 warning generated.
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rfsub.f -o rfsub.o
-f951: Warning: Nonconforming tab character in column 1 of line 234 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 238 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 242 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 245 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 246 [-Wtabs]
-f951: Warning: Nonconforming tab character in column 1 of line 556 [-Wtabs]
-rfsub.f:203:22:
-
- 203 | end if
- | 1
-Warning: Nonconforming tab character at (1) [-Wtabs]
-rfsub.f:283:35:
-
- 283 | totprob = totprob - mprob
- | 1
-Warning: Nonconforming tab character at (1) [-Wtabs]
-rfsub.f:122:35:
-
- 122 | bestsplit(kbuild) = dble(a(msplit,int(best)))
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rfsub.f:123:39:
-
- 123 | bestsplitnext(kbuild) = dble(a(msplit,int(best)+1))
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rfsub.f:125:35:
-
- 125 | bestsplit(kbuild) = best
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rfsub.f:237:16:
-
- 237 | integer jj, subsetvar(mcard)
- | 1
-Warning: Unused variable 'jj' declared at (1) [-Wunused-variable]
-rfsub.f:535:33:
-
- 535 | integer ii, tmp, j, nn, dum
- | 1
-Warning: Unused variable 'dum' declared at (1) [-Wunused-variable]
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c rfutils.c -o rfutils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iRF.so ExportedFunctionsRIT.o RcppExports.o classTree.o init.o processNodes.o regTree.o regrf.o rf.o rfsub.o rfutils.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [iRF.so] Error 1
-ERROR: compilation failed for package ‘iRF’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/iRF/old/iRF.Rcheck/iRF’
-
-```
-# joineRML
-
-
-
-* Version: 0.4.4
-* Source code: https://github.com/cran/joineRML
-* URL: https://github.com/petephilipson/joineRML
-* BugReports: https://github.com/graemeleehickey/joineRML/issues
-* Date/Publication: 2020-04-09 09:30:02 UTC
-* Number of recursive dependencies: 88
-
-Run `revdep_details(,"joineRML")` for more info
-
-
-
-## In both
-
-* checking whether package ‘joineRML’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/joineRML/new/joineRML.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘joineRML’ ...
-** package ‘joineRML’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expW.cpp -o expW.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gammaUpdate.cpp -o gammaUpdate.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gammaUpdate_approx.cpp -o gammaUpdate_approx.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c lambdaUpdate.cpp -o lambdaUpdate.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c mvnorm.cpp -o mvnorm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o joineRML.so RcppExports.o expW.o gammaUpdate.o gammaUpdate_approx.o init.o lambdaUpdate.o mvnorm.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [joineRML.so] Error 1
-ERROR: compilation failed for package ‘joineRML’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/joineRML/new/joineRML.Rcheck/joineRML’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘joineRML’ ...
-** package ‘joineRML’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expW.cpp -o expW.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gammaUpdate.cpp -o gammaUpdate.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gammaUpdate_approx.cpp -o gammaUpdate_approx.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c lambdaUpdate.cpp -o lambdaUpdate.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c mvnorm.cpp -o mvnorm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o joineRML.so RcppExports.o expW.o gammaUpdate.o gammaUpdate_approx.o init.o lambdaUpdate.o mvnorm.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [joineRML.so] Error 1
-ERROR: compilation failed for package ‘joineRML’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/joineRML/old/joineRML.Rcheck/joineRML’
-
-```
-# lpirfs
-
-
-
-* Version: 0.1.7
-* Source code: https://github.com/cran/lpirfs
-* BugReports: https://github.com/adaemmerp/lpirfs/issues
-* Date/Publication: 2019-11-25 09:20:06 UTC
-* Number of recursive dependencies: 135
-
-Run `revdep_details(,"lpirfs")` for more info
-
-
-
-## In both
-
-* checking whether package ‘lpirfs’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/lpirfs/new/lpirfs.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘ggpubr’
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘lpirfs’ ...
-** package ‘lpirfs’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c get_vals_lagcrit.cpp -o get_vals_lagcrit.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c hp_filter.cpp -o hp_filter.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west.cpp -o newey_west.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west_pw.cpp -o newey_west_pw.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west_tsls.cpp -o newey_west_tsls.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ols_diagnost.cpp -o ols_diagnost.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c var_one.cpp -o var_one.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o lpirfs.so RcppExports.o get_vals_lagcrit.o hp_filter.o newey_west.o newey_west_pw.o newey_west_tsls.o ols_diagnost.o var_one.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [lpirfs.so] Error 1
-ERROR: compilation failed for package ‘lpirfs’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/lpirfs/new/lpirfs.Rcheck/lpirfs’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘lpirfs’ ...
-** package ‘lpirfs’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c get_vals_lagcrit.cpp -o get_vals_lagcrit.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c hp_filter.cpp -o hp_filter.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west.cpp -o newey_west.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west_pw.cpp -o newey_west_pw.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west_tsls.cpp -o newey_west_tsls.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ols_diagnost.cpp -o ols_diagnost.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c var_one.cpp -o var_one.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o lpirfs.so RcppExports.o get_vals_lagcrit.o hp_filter.o newey_west.o newey_west_pw.o newey_west_tsls.o ols_diagnost.o var_one.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [lpirfs.so] Error 1
-ERROR: compilation failed for package ‘lpirfs’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/lpirfs/old/lpirfs.Rcheck/lpirfs’
-
-```
-# maEndToEnd
-
-
-
-* Version:
-* Source code: ???
-* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr
-* BugReports: https://github.com/tidyverse/dplyr/issues
-* Number of recursive dependencies: 0
-
-Run `revdep_details(,"")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-openxlsx 4.1.4 4.1.5 TRUE
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
-
-
-installing the source packages ‘hugene10sttranscriptcluster.db’, ‘pd.hugene.1.0.st.v1’, ‘reactome.db’
-
-
-
-```
-### CRAN
-
-```
-
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-openxlsx 4.1.4 4.1.5 TRUE
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
-
-
-installing the source packages ‘hugene10sttranscriptcluster.db’, ‘pd.hugene.1.0.st.v1’, ‘reactome.db’
-
-
-
-```
-# metagene2
-
-
-
-* Version: 1.4.0
-* Source code: https://github.com/cran/metagene2
-* URL: https://github.com/ArnaudDroitLab/metagene2
-* BugReports: https://github.com/ArnaudDroitLab/metagene2/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 114
-
-Run `revdep_details(,"metagene2")` for more info
-
-
-
-## In both
-
-* checking whether package ‘metagene2’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/metagene2/new/metagene2.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘metagene2’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘DESeq’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘metagene2’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/metagene2/new/metagene2.Rcheck/metagene2’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘metagene2’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
- there is no package called ‘DESeq’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘metagene2’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/metagene2/old/metagene2.Rcheck/metagene2’
-
-```
-# mfbvar
-
-
-
-* Version: 0.5.3
-* Source code: https://github.com/cran/mfbvar
-* URL: https://github.com/ankargren/mfbvar
-* BugReports: https://github.com/ankargren/mfbvar/issues
-* Date/Publication: 2020-03-19 22:30:06 UTC
-* Number of recursive dependencies: 82
-
-Run `revdep_details(,"mfbvar")` for more info
-
-
-
-## In both
-
-* checking whether package ‘mfbvar’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mfbvar/new/mfbvar.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘mfbvar’ ...
-** package ‘mfbvar’ successfully unpacked and MD5 sums checked
-** using staged installation
-checking whether the C++ compiler works... yes
-checking for C++ compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C++ compiler... yes
-checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 accepts -g... yes
-checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++11 -E
-checking for macOS... found
-configure: WARNING: OpenMP unavailable and turned off.
-configure: creating ./config.status
-config.status: creating src/Makevars
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c auxmix.cpp -o auxmix.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c builders.cpp -o builders.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c dl_reg.cpp -o dl_reg.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c kf_cpp.cpp -o kf_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c max_eig_cpp.cpp -o max_eig_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_csv.cpp -o mcmc_csv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_diffuse.cpp -o mcmc_diffuse.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_fsv.cpp -o mcmc_fsv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_iw.cpp -o mcmc_iw.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mvn_par.cpp -o mvn_par.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c plot_funs.cpp -o plot_funs.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c posteriors.cpp -o posteriors.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c progutils.cpp -o progutils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c progutils_fsv.cpp -o progutils_fsv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rgig.cpp -o rgig.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rmvn.cpp -o rmvn.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rnd_numbers.cpp -o rnd_numbers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rsimsm_adaptive_cv.cpp -o rsimsm_adaptive_cv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rsimsm_adaptive_univariate.cpp -o rsimsm_adaptive_univariate.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c smoothing.cpp -o smoothing.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_csv.cpp -o update_csv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_demean.cpp -o update_demean.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_dl.cpp -o update_dl.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_fsv.cpp -o update_fsv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_ng.cpp -o update_ng.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c utils.cpp -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mfbvar.so RcppExports.o auxmix.o builders.o dl_reg.o kf_cpp.o max_eig_cpp.o mcmc_csv.o mcmc_diffuse.o mcmc_fsv.o mcmc_iw.o mvn_par.o plot_funs.o posteriors.o progutils.o progutils_fsv.o rgig.o rmvn.o rnd_numbers.o rsimsm_adaptive_cv.o rsimsm_adaptive_univariate.o smoothing.o update_csv.o update_demean.o update_dl.o update_fsv.o update_ng.o utils.o -DARMA_DONT_USE_OPENMP -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [mfbvar.so] Error 1
-ERROR: compilation failed for package ‘mfbvar’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mfbvar/new/mfbvar.Rcheck/mfbvar’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘mfbvar’ ...
-** package ‘mfbvar’ successfully unpacked and MD5 sums checked
-** using staged installation
-checking whether the C++ compiler works... yes
-checking for C++ compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C++ compiler... yes
-checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 accepts -g... yes
-checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++11 -E
-checking for macOS... found
-configure: WARNING: OpenMP unavailable and turned off.
-configure: creating ./config.status
-config.status: creating src/Makevars
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c auxmix.cpp -o auxmix.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c builders.cpp -o builders.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c dl_reg.cpp -o dl_reg.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c kf_cpp.cpp -o kf_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c max_eig_cpp.cpp -o max_eig_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_csv.cpp -o mcmc_csv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_diffuse.cpp -o mcmc_diffuse.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_fsv.cpp -o mcmc_fsv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_iw.cpp -o mcmc_iw.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mvn_par.cpp -o mvn_par.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c plot_funs.cpp -o plot_funs.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c posteriors.cpp -o posteriors.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c progutils.cpp -o progutils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c progutils_fsv.cpp -o progutils_fsv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rgig.cpp -o rgig.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rmvn.cpp -o rmvn.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rnd_numbers.cpp -o rnd_numbers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rsimsm_adaptive_cv.cpp -o rsimsm_adaptive_cv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rsimsm_adaptive_univariate.cpp -o rsimsm_adaptive_univariate.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c smoothing.cpp -o smoothing.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_csv.cpp -o update_csv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_demean.cpp -o update_demean.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_dl.cpp -o update_dl.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_fsv.cpp -o update_fsv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_ng.cpp -o update_ng.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c utils.cpp -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mfbvar.so RcppExports.o auxmix.o builders.o dl_reg.o kf_cpp.o max_eig_cpp.o mcmc_csv.o mcmc_diffuse.o mcmc_fsv.o mcmc_iw.o mvn_par.o plot_funs.o posteriors.o progutils.o progutils_fsv.o rgig.o rmvn.o rnd_numbers.o rsimsm_adaptive_cv.o rsimsm_adaptive_univariate.o smoothing.o update_csv.o update_demean.o update_dl.o update_fsv.o update_ng.o utils.o -DARMA_DONT_USE_OPENMP -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [mfbvar.so] Error 1
-ERROR: compilation failed for package ‘mfbvar’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mfbvar/old/mfbvar.Rcheck/mfbvar’
-
-```
-# miceFast
-
-
-
-* Version: 0.5.1
-* Source code: https://github.com/cran/miceFast
-* URL: https://github.com/Polkas/miceFast
-* BugReports: https://github.com/Polkas/miceFast/issues
-* Date/Publication: 2019-08-19 22:50:02 UTC
-* Number of recursive dependencies: 104
-
-Run `revdep_details(,"miceFast")` for more info
-
-
-
-## In both
-
-* checking whether package ‘miceFast’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/miceFast/new/miceFast.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘miceFast’ ...
-** package ‘miceFast’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c R_funs.cpp -o R_funs.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c corrData.cpp -o corrData.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_additfunc.cpp -o miceFast_additfunc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_class.cpp -o miceFast_class.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_quantmodels.cpp -o miceFast_quantmodels.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o miceFast.so R_funs.o RcppExports.o corrData.o miceFast_additfunc.o miceFast_class.o miceFast_quantmodels.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [miceFast.so] Error 1
-ERROR: compilation failed for package ‘miceFast’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/miceFast/new/miceFast.Rcheck/miceFast’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘miceFast’ ...
-** package ‘miceFast’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c R_funs.cpp -o R_funs.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c corrData.cpp -o corrData.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_additfunc.cpp -o miceFast_additfunc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_class.cpp -o miceFast_class.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_quantmodels.cpp -o miceFast_quantmodels.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o miceFast.so R_funs.o RcppExports.o corrData.o miceFast_additfunc.o miceFast_class.o miceFast_quantmodels.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [miceFast.so] Error 1
-ERROR: compilation failed for package ‘miceFast’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/miceFast/old/miceFast.Rcheck/miceFast’
-
-```
-# MixMatrix
-
-
-
-* Version: 0.2.4
-* Source code: https://github.com/cran/MixMatrix
-* URL: http://github.com/gzt/MixMatrix/, https://gzt.github.io/MixMatrix/
-* BugReports: http://github.com/gzt/MixMatrix/issues
-* Date/Publication: 2019-11-14 22:30:03 UTC
-* Number of recursive dependencies: 78
-
-Run `revdep_details(,"MixMatrix")` for more info
-
-
-
-## In both
-
-* checking whether package ‘MixMatrix’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/MixMatrix/new/MixMatrix.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘MixMatrix’ ...
-** package ‘MixMatrix’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c posdefsqrt.cpp -o posdefsqrt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c stats.cpp -o stats.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MixMatrix.so RcppExports.o posdefsqrt.o stats.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [MixMatrix.so] Error 1
-ERROR: compilation failed for package ‘MixMatrix’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/MixMatrix/new/MixMatrix.Rcheck/MixMatrix’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘MixMatrix’ ...
-** package ‘MixMatrix’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c posdefsqrt.cpp -o posdefsqrt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c stats.cpp -o stats.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MixMatrix.so RcppExports.o posdefsqrt.o stats.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [MixMatrix.so] Error 1
-ERROR: compilation failed for package ‘MixMatrix’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/MixMatrix/old/MixMatrix.Rcheck/MixMatrix’
-
-```
-# momentuHMM
-
-
-
-* Version: 1.5.1
-* Source code: https://github.com/cran/momentuHMM
-* URL: https://github.com/bmcclintock/momentuHMM
-* BugReports: https://github.com/bmcclintock/momentuHMM/issues
-* Date/Publication: 2020-03-06 06:00:02 UTC
-* Number of recursive dependencies: 167
-
-Run `revdep_details(,"momentuHMM")` for more info
-
-
-
-## In both
-
-* checking whether package ‘momentuHMM’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/momentuHMM/new/momentuHMM.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘momentuHMM’ ...
-** package ‘momentuHMM’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XBloop.cpp -o XBloop.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c getDM.cpp -o getDM.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c momentuHMM_init.c -o momentuHMM_init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c nLogLike.cpp -o nLogLike.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c trMatrix.cpp -o trMatrix.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o momentuHMM.so RcppExports.o XBloop.o getDM.o momentuHMM_init.o nLogLike.o trMatrix.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [momentuHMM.so] Error 1
-ERROR: compilation failed for package ‘momentuHMM’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/momentuHMM/new/momentuHMM.Rcheck/momentuHMM’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘momentuHMM’ ...
-** package ‘momentuHMM’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XBloop.cpp -o XBloop.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c getDM.cpp -o getDM.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c momentuHMM_init.c -o momentuHMM_init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c nLogLike.cpp -o nLogLike.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c trMatrix.cpp -o trMatrix.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o momentuHMM.so RcppExports.o XBloop.o getDM.o momentuHMM_init.o nLogLike.o trMatrix.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [momentuHMM.so] Error 1
-ERROR: compilation failed for package ‘momentuHMM’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/momentuHMM/old/momentuHMM.Rcheck/momentuHMM’
-
-```
-# MonetDBLite
-
-
-
-* Version: 0.6.0
-* Source code: https://github.com/cran/MonetDBLite
-* URL: https://github.com/hannesmuehleisen/MonetDBLite-R
-* BugReports: https://github.com/hannesmuehleisen/MonetDBLite-R/issues
-* Date/Publication: 2018-07-27 09:40:03 UTC
-* Number of recursive dependencies: 99
-
-Run `revdep_details(,"MonetDBLite")` for more info
-
-
-
-## In both
-
-* R CMD check timed out
-
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.8Mb
- sub-directories of 1Mb or more:
- libs 5.3Mb
- ```
-
-# morse
-
-
-
-* Version: 3.2.5
-* Source code: https://github.com/cran/morse
-* URL: https://cran.r-project.org/package=morse
-* BugReports: https://github.com/pveber/morse
-* Date/Publication: 2019-09-27 08:50:02 UTC
-* Number of recursive dependencies: 73
-
-Run `revdep_details(,"morse")` for more info
-
-
-
-## In both
-
-* checking whether package ‘morse’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/morse/new/morse.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘morse’ ...
-** package ‘morse’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so
- Reason: image not found
-Execution halted
-ERROR: lazy loading failed for package ‘morse’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/morse/new/morse.Rcheck/morse’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘morse’ ...
-** package ‘morse’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so
- Reason: image not found
-Execution halted
-ERROR: lazy loading failed for package ‘morse’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/morse/old/morse.Rcheck/morse’
-
-```
-# mrgsolve
-
-
-
-* Version: 0.10.1
-* Source code: https://github.com/cran/mrgsolve
-* URL: https://github.com/metrumresearchgroup/mrgsolve
-* BugReports: https://github.com/metrumresearchgroup/mrgsolve/issues
-* Date/Publication: 2020-02-21 06:00:02 UTC
-* Number of recursive dependencies: 52
-
-Run `revdep_details(,"mrgsolve")` for more info
-
-
-
-## In both
-
-* checking whether package ‘mrgsolve’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mrgsolve/new/mrgsolve.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘mrgsolve’ ...
-** package ‘mrgsolve’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c LSODA.cpp -o LSODA.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c dataobject.cpp -o dataobject.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c datarecord.cpp -o datarecord.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c devtran.cpp -o devtran.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c housemodel-mread-source.cpp -o housemodel-mread-source.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c mrgsolve.cpp -o mrgsolve.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c mrgsolve_init.cpp -o mrgsolve_init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c odeproblem.cpp -o odeproblem.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mrgsolve.so LSODA.o RcppExports.o dataobject.o datarecord.o devtran.o housemodel-mread-source.o mrgsolve.o mrgsolve_init.o odeproblem.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [mrgsolve.so] Error 1
-ERROR: compilation failed for package ‘mrgsolve’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mrgsolve/new/mrgsolve.Rcheck/mrgsolve’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘mrgsolve’ ...
-** package ‘mrgsolve’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c LSODA.cpp -o LSODA.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c dataobject.cpp -o dataobject.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c datarecord.cpp -o datarecord.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c devtran.cpp -o devtran.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c housemodel-mread-source.cpp -o housemodel-mread-source.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c mrgsolve.cpp -o mrgsolve.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c mrgsolve_init.cpp -o mrgsolve_init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c odeproblem.cpp -o odeproblem.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mrgsolve.so LSODA.o RcppExports.o dataobject.o datarecord.o devtran.o housemodel-mread-source.o mrgsolve.o mrgsolve_init.o odeproblem.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [mrgsolve.so] Error 1
-ERROR: compilation failed for package ‘mrgsolve’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mrgsolve/old/mrgsolve.Rcheck/mrgsolve’
-
-```
-# NobBS
-
-
-
-* Version: 0.1.0
-* Source code: https://github.com/cran/NobBS
-* Date/Publication: 2020-03-03 10:40:02 UTC
-* Number of recursive dependencies: 25
-
-Run `revdep_details(,"NobBS")` for more info
-
-
-
-## In both
-
-* checking whether package ‘NobBS’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/NobBS/new/NobBS.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘NobBS’ ...
-** package ‘NobBS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so
- Reason: image not found
-Execution halted
-ERROR: lazy loading failed for package ‘NobBS’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/NobBS/new/NobBS.Rcheck/NobBS’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘NobBS’ ...
-** package ‘NobBS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so
- Reason: image not found
-Execution halted
-ERROR: lazy loading failed for package ‘NobBS’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/NobBS/old/NobBS.Rcheck/NobBS’
-
-```
-# NoRCE
-
-
-
-* Version:
-* Source code: ???
-* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr
-* BugReports: https://github.com/tidyverse/dplyr/issues
-* Number of recursive dependencies: 0
-
-Run `revdep_details(,"")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-rtracklayer 1.47.0 1.48.0 TRUE
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
-
-
-installing the source packages ‘reactome.db’, ‘TxDb.Celegans.UCSC.ce11.refGene’, ‘TxDb.Dmelanogaster.UCSC.dm6.ensGene’, ‘TxDb.Drerio.UCSC.danRer10.refGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’, ‘TxDb.Hsapiens.UCSC.hg38.knownGene’, ‘TxDb.Mmusculus.UCSC.mm10.knownGene’, ‘TxDb.Rnorvegicus.UCSC.rn6.refGene’
-
-
-
-```
-### CRAN
-
-```
-
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-rtracklayer 1.47.0 1.48.0 TRUE
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
-
-
-installing the source packages ‘reactome.db’, ‘TxDb.Celegans.UCSC.ce11.refGene’, ‘TxDb.Dmelanogaster.UCSC.dm6.ensGene’, ‘TxDb.Drerio.UCSC.danRer10.refGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’, ‘TxDb.Hsapiens.UCSC.hg38.knownGene’, ‘TxDb.Mmusculus.UCSC.mm10.knownGene’, ‘TxDb.Rnorvegicus.UCSC.rn6.refGene’
-
-
-
-```
-# openair
-
-
-
-* Version: 2.7-2
-* Source code: https://github.com/cran/openair
-* URL: http://davidcarslaw.github.io/openair/
-* BugReports: https://github.com/davidcarslaw/openair/issues
-* Date/Publication: 2020-04-02 07:40:02 UTC
-* Number of recursive dependencies: 47
-
-Run `revdep_details(,"openair")` for more info
-
-
-
-## In both
-
-* checking whether package ‘openair’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/openair/new/openair.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘openair’ ...
-** package ‘openair’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/openair/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c cluster.cpp -o cluster.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/openair/Rcpp/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/openair/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c rolling.cpp -o rolling.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o openair.so cluster.o init.o rolling.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [openair.so] Error 1
-ERROR: compilation failed for package ‘openair’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/openair/new/openair.Rcheck/openair’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘openair’ ...
-** package ‘openair’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c cluster.cpp -o cluster.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c rolling.cpp -o rolling.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o openair.so cluster.o init.o rolling.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [openair.so] Error 1
-ERROR: compilation failed for package ‘openair’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/openair/old/openair.Rcheck/openair’
-
-```
-# partition
-
-
-
-* Version: 0.1.1
-* Source code: https://github.com/cran/partition
-* URL: https://uscbiostats.github.io/partition/, https://github.com/USCbiostats/partition
-* BugReports: https://github.com/USCbiostats/partition/issues
-* Date/Publication: 2019-12-12 06:30:03 UTC
-* Number of recursive dependencies: 83
-
-Run `revdep_details(,"partition")` for more info
-
-
-
-## In both
-
-* checking whether package ‘partition’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/partition/new/partition.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘partition’ ...
-** package ‘partition’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c corr.cpp -o corr.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c icc.cpp -o icc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c kmeans.cpp -o kmeans.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c minr2.cpp -o minr2.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pca.cpp -o pca.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c reduce_partition.cpp -o reduce_partition.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o partition.so RcppExports.o corr.o icc.o kmeans.o minr2.o pca.o reduce_partition.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [partition.so] Error 1
-ERROR: compilation failed for package ‘partition’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/partition/new/partition.Rcheck/partition’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘partition’ ...
-** package ‘partition’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c corr.cpp -o corr.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c icc.cpp -o icc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c kmeans.cpp -o kmeans.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c minr2.cpp -o minr2.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pca.cpp -o pca.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c reduce_partition.cpp -o reduce_partition.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o partition.so RcppExports.o corr.o icc.o kmeans.o minr2.o pca.o reduce_partition.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [partition.so] Error 1
-ERROR: compilation failed for package ‘partition’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/partition/old/partition.Rcheck/partition’
-
-```
-# pccc
-
-
-
-* Version: 1.0.3
-* Source code: https://github.com/cran/pccc
-* URL: https://github.com/CUD2V/pccc
-* BugReports: https://github.com/CUD2V/pccc/issues
-* Date/Publication: 2019-08-21 21:50:06 UTC
-* Number of recursive dependencies: 60
-
-Run `revdep_details(,"pccc")` for more info
-
-
-
-## In both
-
-* checking whether package ‘pccc’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pccc/new/pccc.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘pccc’ ...
-** package ‘pccc’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pccc/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pccc/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c ccc.cpp -o ccc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pccc/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c get_codes.cpp -o get_codes.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pccc/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c pccc.cpp -o pccc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pccc.so RcppExports.o ccc.o get_codes.o pccc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [pccc.so] Error 1
-ERROR: compilation failed for package ‘pccc’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pccc/new/pccc.Rcheck/pccc’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘pccc’ ...
-** package ‘pccc’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c ccc.cpp -o ccc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c get_codes.cpp -o get_codes.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c pccc.cpp -o pccc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pccc.so RcppExports.o ccc.o get_codes.o pccc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [pccc.so] Error 1
-ERROR: compilation failed for package ‘pccc’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pccc/old/pccc.Rcheck/pccc’
-
-```
-# phase1PRMD
-
-
-
-* Version: 1.0.2
-* Source code: https://github.com/cran/phase1PRMD
-* Date/Publication: 2020-03-09 06:50:03 UTC
-* Number of recursive dependencies: 84
-
-Run `revdep_details(,"phase1PRMD")` for more info
-
-
-
-## In both
-
-* checking whether package ‘phase1PRMD’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phase1PRMD/new/phase1PRMD.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘phase1PRMD’ ...
-** package ‘phase1PRMD’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so
- Reason: image not found
-Execution halted
-ERROR: lazy loading failed for package ‘phase1PRMD’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phase1PRMD/new/phase1PRMD.Rcheck/phase1PRMD’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘phase1PRMD’ ...
-** package ‘phase1PRMD’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so
- Reason: image not found
-Execution halted
-ERROR: lazy loading failed for package ‘phase1PRMD’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phase1PRMD/old/phase1PRMD.Rcheck/phase1PRMD’
-
-```
-# phenofit
-
-
-
-* Version: 0.2.7
-* Source code: https://github.com/cran/phenofit
-* URL: https://github.com/kongdd/phenofit
-* BugReports: https://github.com/kongdd/phenofit/issues
-* Date/Publication: 2020-04-02 11:40:03 UTC
-* Number of recursive dependencies: 89
-
-Run `revdep_details(,"phenofit")` for more info
-
-
-
-## In both
-
-* checking whether package ‘phenofit’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phenofit/new/phenofit.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘phenofit’ ...
-** package ‘phenofit’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c doubleLogistics.cpp -o doubleLogistics.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c f_goal.cpp -o f_goal.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c register_routines.c -o register_routines.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c season.cpp -o season.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c smooth_wSG.cpp -o smooth_wSG.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c smooth_whit.c -o smooth_whit.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wTSM.cpp -o wTSM.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o phenofit.so RcppExports.o doubleLogistics.o f_goal.o register_routines.o season.o smooth_wSG.o smooth_whit.o wTSM.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [phenofit.so] Error 1
-ERROR: compilation failed for package ‘phenofit’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phenofit/new/phenofit.Rcheck/phenofit’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘phenofit’ ...
-** package ‘phenofit’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c doubleLogistics.cpp -o doubleLogistics.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c f_goal.cpp -o f_goal.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c register_routines.c -o register_routines.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c season.cpp -o season.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c smooth_wSG.cpp -o smooth_wSG.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c smooth_whit.c -o smooth_whit.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wTSM.cpp -o wTSM.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o phenofit.so RcppExports.o doubleLogistics.o f_goal.o register_routines.o season.o smooth_wSG.o smooth_whit.o wTSM.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [phenofit.so] Error 1
-ERROR: compilation failed for package ‘phenofit’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phenofit/old/phenofit.Rcheck/phenofit’
-
-```
-# phyr
-
-
-
-* Version: 1.0.2
-* Source code: https://github.com/cran/phyr
-* URL: https://github.com/daijiang/phyr/
-* BugReports: https://github.com/daijiang/phyr/issues
-* Date/Publication: 2019-11-13 22:20:02 UTC
-* Number of recursive dependencies: 134
-
-Run `revdep_details(,"phyr")` for more info
-
-
-
-## In both
-
-* checking whether package ‘phyr’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phyr/new/phyr.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘INLA’
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘phyr’ ...
-** package ‘phyr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c binaryPGLMM.cpp -o binaryPGLMM.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c cor_phylo.cpp -o cor_phylo.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pcd.cpp -o pcd.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pglmm_binary.cpp -o pglmm_binary.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pglmm_gaussian.cpp -o pglmm_gaussian.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c psv.cpp -o psv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o phyr.so RcppExports.o binaryPGLMM.o cor_phylo.o pcd.o pglmm_binary.o pglmm_gaussian.o psv.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [phyr.so] Error 1
-ERROR: compilation failed for package ‘phyr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phyr/new/phyr.Rcheck/phyr’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘phyr’ ...
-** package ‘phyr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c binaryPGLMM.cpp -o binaryPGLMM.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c cor_phylo.cpp -o cor_phylo.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pcd.cpp -o pcd.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pglmm_binary.cpp -o pglmm_binary.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pglmm_gaussian.cpp -o pglmm_gaussian.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c psv.cpp -o psv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o phyr.so RcppExports.o binaryPGLMM.o cor_phylo.o pcd.o pglmm_binary.o pglmm_gaussian.o psv.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [phyr.so] Error 1
-ERROR: compilation failed for package ‘phyr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phyr/old/phyr.Rcheck/phyr’
-
-```
-# PLNmodels
-
-
-
-* Version: 0.9.5
-* Source code: https://github.com/cran/PLNmodels
-* URL: https://jchiquet.github.io/PLNmodels/
-* BugReports: https://github.com/jchiquet/PLNmodels/issues
-* Date/Publication: 2020-01-27 21:10:02 UTC
-* Number of recursive dependencies: 112
-
-Run `revdep_details(,"PLNmodels")` for more info
-
-
-
-## In both
-
-* checking whether package ‘PLNmodels’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PLNmodels/new/PLNmodels.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘PLNmodels’ ...
-** package ‘PLNmodels’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c call_optimizers.cpp -o call_optimizers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c gradients.cpp -o gradients.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c nlopt_utils.cpp -o nlopt_utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c optimizers.cpp -o optimizers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PLNmodels.so RcppExports.o call_optimizers.o gradients.o nlopt_utils.o optimizers.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [PLNmodels.so] Error 1
-ERROR: compilation failed for package ‘PLNmodels’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PLNmodels/new/PLNmodels.Rcheck/PLNmodels’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘PLNmodels’ ...
-** package ‘PLNmodels’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c call_optimizers.cpp -o call_optimizers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c gradients.cpp -o gradients.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c nlopt_utils.cpp -o nlopt_utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c optimizers.cpp -o optimizers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PLNmodels.so RcppExports.o call_optimizers.o gradients.o nlopt_utils.o optimizers.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [PLNmodels.so] Error 1
-ERROR: compilation failed for package ‘PLNmodels’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PLNmodels/old/PLNmodels.Rcheck/PLNmodels’
-
-```
-# pomp
-
-
-
-* Version: 2.8
-* Source code: https://github.com/cran/pomp
-* URL: https://kingaa.github.io/pomp/
-* BugReports: https://github.com/kingaa/pomp/issues/
-* Date/Publication: 2020-04-10 20:10:02 UTC
-* Number of recursive dependencies: 66
-
-Run `revdep_details(,"pomp")` for more info
-
-
-
-## In both
-
-* checking whether package ‘pomp’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pomp/new/pomp.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘pomp’ ...
-** package ‘pomp’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bspline.c -o bspline.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c distributions.c -o distributions.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dmeasure.c -o dmeasure.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dprior.c -o dprior.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dprocess.c -o dprocess.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c euler.c -o euler.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gompertz.c -o gompertz.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lookup_table.c -o lookup_table.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mif2.c -o mif2.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ou2.c -o ou2.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c partrans.c -o partrans.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pfilter.c -o pfilter.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pomp_fun.c -o pomp_fun.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe.c -o probe.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_acf.c -o probe_acf.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_marginal.c -o probe_marginal.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_nlar.c -o probe_nlar.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c resample.c -o resample.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rinit.c -o rinit.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rmeasure.c -o rmeasure.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rprior.c -o rprior.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rprocess.c -o rprocess.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c simulate.c -o simulate.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c skeleton.c -o skeleton.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sobolseq.c -o sobolseq.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ssa.c -o ssa.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c synth_lik.c -o synth_lik.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c trajectory.c -o trajectory.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c transformations.c -o transformations.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c userdata.c -o userdata.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pomp.so bspline.o distributions.o dmeasure.o dprior.o dprocess.o euler.o gompertz.o init.o lookup_table.o mif2.o ou2.o partrans.o pfilter.o pomp_fun.o probe.o probe_acf.o probe_marginal.o probe_nlar.o resample.o rinit.o rmeasure.o rprior.o rprocess.o simulate.o skeleton.o sobolseq.o ssa.o synth_lik.o trajectory.o transformations.o userdata.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [pomp.so] Error 1
-ERROR: compilation failed for package ‘pomp’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pomp/new/pomp.Rcheck/pomp’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘pomp’ ...
-** package ‘pomp’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bspline.c -o bspline.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c distributions.c -o distributions.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dmeasure.c -o dmeasure.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dprior.c -o dprior.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dprocess.c -o dprocess.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c euler.c -o euler.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gompertz.c -o gompertz.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lookup_table.c -o lookup_table.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mif2.c -o mif2.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ou2.c -o ou2.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c partrans.c -o partrans.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pfilter.c -o pfilter.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pomp_fun.c -o pomp_fun.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe.c -o probe.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_acf.c -o probe_acf.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_marginal.c -o probe_marginal.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_nlar.c -o probe_nlar.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c resample.c -o resample.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rinit.c -o rinit.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rmeasure.c -o rmeasure.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rprior.c -o rprior.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rprocess.c -o rprocess.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c simulate.c -o simulate.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c skeleton.c -o skeleton.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sobolseq.c -o sobolseq.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ssa.c -o ssa.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c synth_lik.c -o synth_lik.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c trajectory.c -o trajectory.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c transformations.c -o transformations.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c userdata.c -o userdata.o
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pomp.so bspline.o distributions.o dmeasure.o dprior.o dprocess.o euler.o gompertz.o init.o lookup_table.o mif2.o ou2.o partrans.o pfilter.o pomp_fun.o probe.o probe_acf.o probe_marginal.o probe_nlar.o resample.o rinit.o rmeasure.o rprior.o rprocess.o simulate.o skeleton.o sobolseq.o ssa.o synth_lik.o trajectory.o transformations.o userdata.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [pomp.so] Error 1
-ERROR: compilation failed for package ‘pomp’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pomp/old/pomp.Rcheck/pomp’
-
-```
-# PPforest
-
-
-
-* Version: 0.1.1
-* Source code: https://github.com/cran/PPforest
-* URL: https://github.com/natydasilva/PPforest
-* Date/Publication: 2018-06-11 18:46:17 UTC
-* Number of recursive dependencies: 88
-
-Run `revdep_details(,"PPforest")` for more info
-
-
-
-## In both
-
-* checking whether package ‘PPforest’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PPforest/new/PPforest.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘PPforest’ ...
-** package ‘PPforest’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c optim_index.cpp -o optim_index.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PPforest.so RcppExports.o optim_index.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [PPforest.so] Error 1
-ERROR: compilation failed for package ‘PPforest’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PPforest/new/PPforest.Rcheck/PPforest’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘PPforest’ ...
-** package ‘PPforest’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c optim_index.cpp -o optim_index.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PPforest.so RcppExports.o optim_index.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [PPforest.so] Error 1
-ERROR: compilation failed for package ‘PPforest’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PPforest/old/PPforest.Rcheck/PPforest’
-
-```
-# pRoloc
-
-
-
-* Version: 1.28.0
-* Source code: https://github.com/cran/pRoloc
-* URL: https://github.com/lgatto/pRoloc
-* BugReports: https://github.com/lgatto/pRoloc/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 218
-
-Run `revdep_details(,"pRoloc")` for more info
-
-
-
-## In both
-
-* checking whether package ‘pRoloc’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pRoloc/new/pRoloc.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘pRoloc’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dmvtCpp.cpp -o dmvtCpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pRoloc.cpp -o pRoloc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pRoloc.so RcppExports.o dmvtCpp.o pRoloc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [pRoloc.so] Error 1
-ERROR: compilation failed for package ‘pRoloc’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pRoloc/new/pRoloc.Rcheck/pRoloc’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘pRoloc’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dmvtCpp.cpp -o dmvtCpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pRoloc.cpp -o pRoloc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pRoloc.so RcppExports.o dmvtCpp.o pRoloc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [pRoloc.so] Error 1
-ERROR: compilation failed for package ‘pRoloc’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pRoloc/old/pRoloc.Rcheck/pRoloc’
-
-```
-# psychmeta
-
-
-
-* Version: 2.3.8
-* Source code: https://github.com/cran/psychmeta
-* BugReports: https://github.com/psychmeta/psychmeta/issues
-* Date/Publication: 2020-04-22 05:20:02 UTC
-* Number of recursive dependencies: 85
-
-Run `revdep_details(,"psychmeta")` for more info
-
-
-
-## In both
-
-* checking whether package ‘psychmeta’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychmeta/new/psychmeta.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘psychmeta’ ...
-** package ‘psychmeta’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so
- Reason: image not found
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘psychmeta’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychmeta/new/psychmeta.Rcheck/psychmeta’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘psychmeta’ ...
-** package ‘psychmeta’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so
- Reason: image not found
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘psychmeta’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychmeta/old/psychmeta.Rcheck/psychmeta’
-
-```
-# psychonetrics
-
-
-
-* Version: 0.7.1
-* Source code: https://github.com/cran/psychonetrics
-* URL: http://psychonetrics.org/
-* BugReports: https://github.com/SachaEpskamp/psychonetrics/issues
-* Date/Publication: 2020-04-15 09:20:02 UTC
-* Number of recursive dependencies: 153
-
-Run `revdep_details(,"psychonetrics")` for more info
-
-
-
-## In both
-
-* checking whether package ‘psychonetrics’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychonetrics/new/psychonetrics.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘psychonetrics’ ...
-** package ‘psychonetrics’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_RcppHelpers.cpp -o 02_algebrahelpers_RcppHelpers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_kronecker.cpp -o 02_algebrahelpers_kronecker.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_modelMatrix_cpp.cpp -o 02_algebrahelpers_modelMatrix_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 03_modelformation_formModelMatrices_cpp.cpp -o 03_modelformation_formModelMatrices_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 03_modelformation_impliedcovstructures.cpp -o 03_modelformation_impliedcovstructures.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalFit_FisherInformation_cpp.cpp -o 04_generalFit_FisherInformation_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalFit_gradient_cpp.cpp -o 04_generalFit_gradient_cpp.o
-04_generalFit_gradient_cpp.cpp:39:10: warning: local variable 'grad' will be copied despite being returned by name [-Wreturn-std-move]
- return grad;
- ^~~~
-04_generalFit_gradient_cpp.cpp:39:10: note: call 'std::move' explicitly to avoid copying
- return grad;
- ^~~~
- std::move(grad)
-04_generalFit_gradient_cpp.cpp:53:10: warning: local variable 'grad' will be copied despite being returned by name [-Wreturn-std-move]
- return grad;
- ^~~~
-04_generalFit_gradient_cpp.cpp:53:10: note: call 'std::move' explicitly to avoid copying
- return grad;
- ^~~~
- std::move(grad)
-2 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_fitfunction_cpp.cpp -o 04_generalfit_fitfunction_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_implied_and_prepare.cpp -o 04_generalfit_implied_and_prepare.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_loglik_fimlcpp.cpp -o 04_generalfit_loglik_fimlcpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_psychonetrics_BFGS.cpp -o 04_generalfit_psychonetrics_BFGS.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_expected_Hessian_Gauss_cpp.cpp -o 05_MLestimator_expected_Hessian_Gauss_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_fit_Gauss_cpp.cpp -o 05_MLestimator_fit_Gauss_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_fit_Ising.cpp -o 05_MLestimator_fit_Ising.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_gradient_Gauss_cpp.cpp -o 05_MLestimator_gradient_Gauss_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_gradient_Ising_cpp.cpp -o 05_MLestimator_gradient_Ising_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_DWLS_Wmat.cpp -o 06_DWLS_Wmat.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_expectedHessian_cpp.cpp -o 06_ULS_expectedHessian_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_fitfunction_cpp.cpp -o 06_ULS_fitfunction_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_gradient_cpp.cpp -o 06_ULS_gradient_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_WLS_Wmat.cpp -o 06_WLS_Wmat.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_expected_hessian_gauss_cppversion.cpp -o 07_FIMLestimator_expected_hessian_gauss_cppversion.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_fitfunction_cppversion.cpp -o 07_FIMLestimator_fitfunction_cppversion.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_jacobian_gauss.cpp -o 07_FIMLestimator_jacobian_gauss.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 10_ordinal_covPrepare.cpp -o 10_ordinal_covPrepare.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 10_ordinal_cppFuns.cpp -o 10_ordinal_cppFuns.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_derivatives_cpp.cpp -o 14_varcov_derivatives_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_implied_cpp.cpp -o 14_varcov_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_prepare_cpp.cpp -o 14_varcov_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_derivatives_cpp.cpp -o 15_lvm_derivatives_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_implied_cpp.cpp -o 15_lvm_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_prepare_cpp.cpp -o 15_lvm_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_derivatives_cpp.cpp -o 16_var1_derivatives_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_implied_cpp.cpp -o 16_var1_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_prepare_cpp.cpp -o 16_var1_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_derivatives_cpp.cpp -o 18_dlvm1_derivatives_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_implied_cpp.cpp -o 18_dlvm1_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_prepare_cpp.cpp -o 18_dlvm1_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_derivatives.cpp -o 19_tsdlvm1_derivatives.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_implied_cpp.cpp -o 19_tsdlvm1_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_prepare_cpp.cpp -o 19_tsdlvm1_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_derivatives_cpp.cpp -o 20_meta_varcov_derivatives_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_implied.cpp -o 20_meta_varcov_implied.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_prepare_cpp.cpp -o 20_meta_varcov_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_derivatives.cpp -o 21_Ising_derivatives.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_expectedHessian.cpp -o 21_Ising_expectedHessian.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_helperfunctions.cpp -o 21_Ising_helperfunctions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_implied_cpp.cpp -o 21_Ising_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_prepare_cpp.cpp -o 21_Ising_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_derivatives.cpp -o 22_ml_lvm_derivatives.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_implied_cpp.cpp -o 22_ml_lvm_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_prepare_cpp.cpp -o 22_ml_lvm_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansion_updateModel_cpp.cpp -o b_modelexpansion_updateModel_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansions_addMIs_cpp.cpp -o b_modelexpansions_addMIs_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansions_addSEs_cpp.cpp -o b_modelexpansions_addSEs_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o psychonetrics.so 02_algebrahelpers_RcppHelpers.o 02_algebrahelpers_kronecker.o 02_algebrahelpers_modelMatrix_cpp.o 03_modelformation_formModelMatrices_cpp.o 03_modelformation_impliedcovstructures.o 04_generalFit_FisherInformation_cpp.o 04_generalFit_gradient_cpp.o 04_generalfit_fitfunction_cpp.o 04_generalfit_implied_and_prepare.o 04_generalfit_loglik_fimlcpp.o 04_generalfit_psychonetrics_BFGS.o 05_MLestimator_expected_Hessian_Gauss_cpp.o 05_MLestimator_fit_Gauss_cpp.o 05_MLestimator_fit_Ising.o 05_MLestimator_gradient_Gauss_cpp.o 05_MLestimator_gradient_Ising_cpp.o 06_DWLS_Wmat.o 06_ULS_expectedHessian_cpp.o 06_ULS_fitfunction_cpp.o 06_ULS_gradient_cpp.o 06_WLS_Wmat.o 07_FIMLestimator_expected_hessian_gauss_cppversion.o 07_FIMLestimator_fitfunction_cppversion.o 07_FIMLestimator_jacobian_gauss.o 10_ordinal_covPrepare.o 10_ordinal_cppFuns.o 14_varcov_derivatives_cpp.o 14_varcov_implied_cpp.o 14_varcov_prepare_cpp.o 15_lvm_derivatives_cpp.o 15_lvm_implied_cpp.o 15_lvm_prepare_cpp.o 16_var1_derivatives_cpp.o 16_var1_implied_cpp.o 16_var1_prepare_cpp.o 18_dlvm1_derivatives_cpp.o 18_dlvm1_implied_cpp.o 18_dlvm1_prepare_cpp.o 19_tsdlvm1_derivatives.o 19_tsdlvm1_implied_cpp.o 19_tsdlvm1_prepare_cpp.o 20_meta_varcov_derivatives_cpp.o 20_meta_varcov_implied.o 20_meta_varcov_prepare_cpp.o 21_Ising_derivatives.o 21_Ising_expectedHessian.o 21_Ising_helperfunctions.o 21_Ising_implied_cpp.o 21_Ising_prepare_cpp.o 22_ml_lvm_derivatives.o 22_ml_lvm_implied_cpp.o 22_ml_lvm_prepare_cpp.o RcppExports.o b_modelexpansion_updateModel_cpp.o b_modelexpansions_addMIs_cpp.o b_modelexpansions_addSEs_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [psychonetrics.so] Error 1
-ERROR: compilation failed for package ‘psychonetrics’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychonetrics/new/psychonetrics.Rcheck/psychonetrics’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘psychonetrics’ ...
-** package ‘psychonetrics’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_RcppHelpers.cpp -o 02_algebrahelpers_RcppHelpers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_kronecker.cpp -o 02_algebrahelpers_kronecker.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_modelMatrix_cpp.cpp -o 02_algebrahelpers_modelMatrix_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 03_modelformation_formModelMatrices_cpp.cpp -o 03_modelformation_formModelMatrices_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 03_modelformation_impliedcovstructures.cpp -o 03_modelformation_impliedcovstructures.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalFit_FisherInformation_cpp.cpp -o 04_generalFit_FisherInformation_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalFit_gradient_cpp.cpp -o 04_generalFit_gradient_cpp.o
-04_generalFit_gradient_cpp.cpp:39:10: warning: local variable 'grad' will be copied despite being returned by name [-Wreturn-std-move]
- return grad;
- ^~~~
-04_generalFit_gradient_cpp.cpp:39:10: note: call 'std::move' explicitly to avoid copying
- return grad;
- ^~~~
- std::move(grad)
-04_generalFit_gradient_cpp.cpp:53:10: warning: local variable 'grad' will be copied despite being returned by name [-Wreturn-std-move]
- return grad;
- ^~~~
-04_generalFit_gradient_cpp.cpp:53:10: note: call 'std::move' explicitly to avoid copying
- return grad;
- ^~~~
- std::move(grad)
-2 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_fitfunction_cpp.cpp -o 04_generalfit_fitfunction_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_implied_and_prepare.cpp -o 04_generalfit_implied_and_prepare.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_loglik_fimlcpp.cpp -o 04_generalfit_loglik_fimlcpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_psychonetrics_BFGS.cpp -o 04_generalfit_psychonetrics_BFGS.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_expected_Hessian_Gauss_cpp.cpp -o 05_MLestimator_expected_Hessian_Gauss_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_fit_Gauss_cpp.cpp -o 05_MLestimator_fit_Gauss_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_fit_Ising.cpp -o 05_MLestimator_fit_Ising.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_gradient_Gauss_cpp.cpp -o 05_MLestimator_gradient_Gauss_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_gradient_Ising_cpp.cpp -o 05_MLestimator_gradient_Ising_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_DWLS_Wmat.cpp -o 06_DWLS_Wmat.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_expectedHessian_cpp.cpp -o 06_ULS_expectedHessian_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_fitfunction_cpp.cpp -o 06_ULS_fitfunction_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_gradient_cpp.cpp -o 06_ULS_gradient_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_WLS_Wmat.cpp -o 06_WLS_Wmat.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_expected_hessian_gauss_cppversion.cpp -o 07_FIMLestimator_expected_hessian_gauss_cppversion.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_fitfunction_cppversion.cpp -o 07_FIMLestimator_fitfunction_cppversion.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_jacobian_gauss.cpp -o 07_FIMLestimator_jacobian_gauss.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 10_ordinal_covPrepare.cpp -o 10_ordinal_covPrepare.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 10_ordinal_cppFuns.cpp -o 10_ordinal_cppFuns.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_derivatives_cpp.cpp -o 14_varcov_derivatives_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_implied_cpp.cpp -o 14_varcov_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_prepare_cpp.cpp -o 14_varcov_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_derivatives_cpp.cpp -o 15_lvm_derivatives_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_implied_cpp.cpp -o 15_lvm_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_prepare_cpp.cpp -o 15_lvm_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_derivatives_cpp.cpp -o 16_var1_derivatives_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_implied_cpp.cpp -o 16_var1_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_prepare_cpp.cpp -o 16_var1_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_derivatives_cpp.cpp -o 18_dlvm1_derivatives_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_implied_cpp.cpp -o 18_dlvm1_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_prepare_cpp.cpp -o 18_dlvm1_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_derivatives.cpp -o 19_tsdlvm1_derivatives.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_implied_cpp.cpp -o 19_tsdlvm1_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_prepare_cpp.cpp -o 19_tsdlvm1_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_derivatives_cpp.cpp -o 20_meta_varcov_derivatives_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_implied.cpp -o 20_meta_varcov_implied.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_prepare_cpp.cpp -o 20_meta_varcov_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_derivatives.cpp -o 21_Ising_derivatives.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_expectedHessian.cpp -o 21_Ising_expectedHessian.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_helperfunctions.cpp -o 21_Ising_helperfunctions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_implied_cpp.cpp -o 21_Ising_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_prepare_cpp.cpp -o 21_Ising_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_derivatives.cpp -o 22_ml_lvm_derivatives.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_implied_cpp.cpp -o 22_ml_lvm_implied_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_prepare_cpp.cpp -o 22_ml_lvm_prepare_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansion_updateModel_cpp.cpp -o b_modelexpansion_updateModel_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansions_addMIs_cpp.cpp -o b_modelexpansions_addMIs_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansions_addSEs_cpp.cpp -o b_modelexpansions_addSEs_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o psychonetrics.so 02_algebrahelpers_RcppHelpers.o 02_algebrahelpers_kronecker.o 02_algebrahelpers_modelMatrix_cpp.o 03_modelformation_formModelMatrices_cpp.o 03_modelformation_impliedcovstructures.o 04_generalFit_FisherInformation_cpp.o 04_generalFit_gradient_cpp.o 04_generalfit_fitfunction_cpp.o 04_generalfit_implied_and_prepare.o 04_generalfit_loglik_fimlcpp.o 04_generalfit_psychonetrics_BFGS.o 05_MLestimator_expected_Hessian_Gauss_cpp.o 05_MLestimator_fit_Gauss_cpp.o 05_MLestimator_fit_Ising.o 05_MLestimator_gradient_Gauss_cpp.o 05_MLestimator_gradient_Ising_cpp.o 06_DWLS_Wmat.o 06_ULS_expectedHessian_cpp.o 06_ULS_fitfunction_cpp.o 06_ULS_gradient_cpp.o 06_WLS_Wmat.o 07_FIMLestimator_expected_hessian_gauss_cppversion.o 07_FIMLestimator_fitfunction_cppversion.o 07_FIMLestimator_jacobian_gauss.o 10_ordinal_covPrepare.o 10_ordinal_cppFuns.o 14_varcov_derivatives_cpp.o 14_varcov_implied_cpp.o 14_varcov_prepare_cpp.o 15_lvm_derivatives_cpp.o 15_lvm_implied_cpp.o 15_lvm_prepare_cpp.o 16_var1_derivatives_cpp.o 16_var1_implied_cpp.o 16_var1_prepare_cpp.o 18_dlvm1_derivatives_cpp.o 18_dlvm1_implied_cpp.o 18_dlvm1_prepare_cpp.o 19_tsdlvm1_derivatives.o 19_tsdlvm1_implied_cpp.o 19_tsdlvm1_prepare_cpp.o 20_meta_varcov_derivatives_cpp.o 20_meta_varcov_implied.o 20_meta_varcov_prepare_cpp.o 21_Ising_derivatives.o 21_Ising_expectedHessian.o 21_Ising_helperfunctions.o 21_Ising_implied_cpp.o 21_Ising_prepare_cpp.o 22_ml_lvm_derivatives.o 22_ml_lvm_implied_cpp.o 22_ml_lvm_prepare_cpp.o RcppExports.o b_modelexpansion_updateModel_cpp.o b_modelexpansions_addMIs_cpp.o b_modelexpansions_addSEs_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [psychonetrics.so] Error 1
-ERROR: compilation failed for package ‘psychonetrics’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychonetrics/old/psychonetrics.Rcheck/psychonetrics’
-
-```
-# qgraph
-
-
-
-* Version: 1.6.5
-* Source code: https://github.com/cran/qgraph
-* URL: http://sachaepskamp.com/qgraph
-* BugReports: https://github.com/SachaEpskamp/qgraph
-* Date/Publication: 2020-02-21 19:20:02 UTC
-* Number of recursive dependencies: 111
-
-Run `revdep_details(,"qgraph")` for more info
-
-
-
-## In both
-
-* checking whether package ‘qgraph’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qgraph/new/qgraph.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘sendplot’
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘qgraph’ ...
-** package ‘qgraph’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qgraph/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qgraph/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c layout_rcpp.cpp -o layout_rcpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qgraph.so RcppExports.o layout_rcpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [qgraph.so] Error 1
-ERROR: compilation failed for package ‘qgraph’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qgraph/new/qgraph.Rcheck/qgraph’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘qgraph’ ...
-** package ‘qgraph’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c layout_rcpp.cpp -o layout_rcpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qgraph.so RcppExports.o layout_rcpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [qgraph.so] Error 1
-ERROR: compilation failed for package ‘qgraph’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qgraph/old/qgraph.Rcheck/qgraph’
-
-```
-# quanteda
-
-
-
-* Version: 2.0.1
-* Source code: https://github.com/cran/quanteda
-* URL: https://quanteda.io
-* BugReports: https://github.com/quanteda/quanteda/issues
-* Date/Publication: 2020-03-18 15:40:07 UTC
-* Number of recursive dependencies: 153
-
-Run `revdep_details(,"quanteda")` for more info
-
-
-
-## In both
-
-* checking whether package ‘quanteda’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quanteda/new/quanteda.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘quanteda’ ...
-** package ‘quanteda’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c collocations_mt_.cpp -o collocations_mt_.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c dist_mt.cpp -o dist_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c fcm_mt.cpp -o fcm_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c kwic_mt.cpp -o kwic_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_chunk_mt.cpp -o tokens_chunk_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_compound_mt.cpp -o tokens_compound_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_lookup_mt.cpp -o tokens_lookup_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_ngrams_mt.cpp -o tokens_ngrams_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_recompile_mt.cpp -o tokens_recompile_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_replace_mt.cpp -o tokens_replace_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_segment_mt.cpp -o tokens_segment_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_select_mt.cpp -o tokens_select_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c utility.cpp -o utility.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c wordcloud.cpp -o wordcloud.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o quanteda.so RcppExports.o collocations_mt_.o dist_mt.o fcm_mt.o kwic_mt.o tokens_chunk_mt.o tokens_compound_mt.o tokens_lookup_mt.o tokens_ngrams_mt.o tokens_recompile_mt.o tokens_replace_mt.o tokens_segment_mt.o tokens_select_mt.o utility.o wordcloud.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [quanteda.so] Error 1
-ERROR: compilation failed for package ‘quanteda’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quanteda/new/quanteda.Rcheck/quanteda’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘quanteda’ ...
-** package ‘quanteda’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c collocations_mt_.cpp -o collocations_mt_.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c dist_mt.cpp -o dist_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c fcm_mt.cpp -o fcm_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c kwic_mt.cpp -o kwic_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_chunk_mt.cpp -o tokens_chunk_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_compound_mt.cpp -o tokens_compound_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_lookup_mt.cpp -o tokens_lookup_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_ngrams_mt.cpp -o tokens_ngrams_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_recompile_mt.cpp -o tokens_recompile_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_replace_mt.cpp -o tokens_replace_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_segment_mt.cpp -o tokens_segment_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_select_mt.cpp -o tokens_select_mt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c utility.cpp -o utility.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c wordcloud.cpp -o wordcloud.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o quanteda.so RcppExports.o collocations_mt_.o dist_mt.o fcm_mt.o kwic_mt.o tokens_chunk_mt.o tokens_compound_mt.o tokens_lookup_mt.o tokens_ngrams_mt.o tokens_recompile_mt.o tokens_replace_mt.o tokens_segment_mt.o tokens_select_mt.o utility.o wordcloud.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [quanteda.so] Error 1
-ERROR: compilation failed for package ‘quanteda’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quanteda/old/quanteda.Rcheck/quanteda’
-
-```
-# quokar
-
-
-
-* Version: 0.1.0
-* Source code: https://github.com/cran/quokar
-* URL: https://github.com/wenjingwang/quokar
-* BugReports: https://github.com/wenjingwang/quokar/issues
-* Date/Publication: 2017-11-10 10:21:36 UTC
-* Number of recursive dependencies: 82
-
-Run `revdep_details(,"quokar")` for more info
-
-
-
-## In both
-
-* checking whether package ‘quokar’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quokar/new/quokar.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘quokar’ ...
-** package ‘quokar’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rqbr.f -o rqbr.o
-rqbr.f:567:5:
-
- 567 | 23243 continue
- | 1
-Warning: Label 23243 at (1) defined but not used [-Wunused-label]
-rqbr.f:527:5:
-
- 527 | 23231 continue
- | 1
-Warning: Label 23231 at (1) defined but not used [-Wunused-label]
-rqbr.f:514:5:
-
- 514 | 23227 continue
- | 1
-Warning: Label 23227 at (1) defined but not used [-Wunused-label]
-rqbr.f:517:5:
-
- 517 | 23223 continue
- | 1
-Warning: Label 23223 at (1) defined but not used [-Wunused-label]
-rqbr.f:506:5:
-
- 506 | 23221 continue
- | 1
-Warning: Label 23221 at (1) defined but not used [-Wunused-label]
-rqbr.f:481:5:
-
- 481 | 23205 continue
- | 1
-Warning: Label 23205 at (1) defined but not used [-Wunused-label]
-rqbr.f:462:5:
-
- 462 | 23203 continue
- | 1
-Warning: Label 23203 at (1) defined but not used [-Wunused-label]
-rqbr.f:458:5:
-
- 458 | 23201 continue
- | 1
-Warning: Label 23201 at (1) defined but not used [-Wunused-label]
-rqbr.f:432:5:
-
- 432 | 23193 continue
- | 1
-Warning: Label 23193 at (1) defined but not used [-Wunused-label]
-rqbr.f:425:5:
-
- 425 | 23191 continue
- | 1
-Warning: Label 23191 at (1) defined but not used [-Wunused-label]
-rqbr.f:375:5:
-
- 375 | 23171 continue
- | 1
-Warning: Label 23171 at (1) defined but not used [-Wunused-label]
-rqbr.f:393:5:
-
- 393 | 23169 continue
- | 1
-Warning: Label 23169 at (1) defined but not used [-Wunused-label]
-rqbr.f:361:5:
-
- 361 | 23167 continue
- | 1
-Warning: Label 23167 at (1) defined but not used [-Wunused-label]
-rqbr.f:348:5:
-
- 348 | 23161 continue
- | 1
-Warning: Label 23161 at (1) defined but not used [-Wunused-label]
-rqbr.f:341:5:
-
- 341 | 23157 continue
- | 1
-Warning: Label 23157 at (1) defined but not used [-Wunused-label]
-rqbr.f:336:5:
-
- 336 | 23155 continue
- | 1
-Warning: Label 23155 at (1) defined but not used [-Wunused-label]
-rqbr.f:327:5:
-
- 327 | 23147 continue
- | 1
-Warning: Label 23147 at (1) defined but not used [-Wunused-label]
-rqbr.f:317:5:
-
- 317 | 23141 continue
- | 1
-Warning: Label 23141 at (1) defined but not used [-Wunused-label]
-rqbr.f:303:5:
-
- 303 | 23139 continue
- | 1
-Warning: Label 23139 at (1) defined but not used [-Wunused-label]
-rqbr.f:294:5:
-
- 294 | 23133 continue
- | 1
-Warning: Label 23133 at (1) defined but not used [-Wunused-label]
-rqbr.f:277:5:
-
- 277 | 23129 continue
- | 1
-Warning: Label 23129 at (1) defined but not used [-Wunused-label]
-rqbr.f:272:5:
-
- 272 | 23121 continue
- | 1
-Warning: Label 23121 at (1) defined but not used [-Wunused-label]
-rqbr.f:258:5:
-
- 258 | 23117 continue
- | 1
-Warning: Label 23117 at (1) defined but not used [-Wunused-label]
-rqbr.f:243:5:
-
- 243 | 23111 continue
- | 1
-Warning: Label 23111 at (1) defined but not used [-Wunused-label]
-rqbr.f:234:5:
-
- 234 | 23107 continue
- | 1
-Warning: Label 23107 at (1) defined but not used [-Wunused-label]
-rqbr.f:237:5:
-
- 237 | 23103 continue
- | 1
-Warning: Label 23103 at (1) defined but not used [-Wunused-label]
-rqbr.f:225:5:
-
- 225 | 23099 continue
- | 1
-Warning: Label 23099 at (1) defined but not used [-Wunused-label]
-rqbr.f:217:5:
-
- 217 | 23097 continue
- | 1
-Warning: Label 23097 at (1) defined but not used [-Wunused-label]
-rqbr.f:208:5:
-
- 208 | 23095 continue
- | 1
-Warning: Label 23095 at (1) defined but not used [-Wunused-label]
-rqbr.f:187:5:
-
- 187 | 23085 continue
- | 1
-Warning: Label 23085 at (1) defined but not used [-Wunused-label]
-rqbr.f:210:5:
-
- 210 | 23080 goto 23079
- | 1
-Warning: Label 23080 at (1) defined but not used [-Wunused-label]
-rqbr.f:174:5:
-
- 174 | 23076 continue
- | 1
-Warning: Label 23076 at (1) defined but not used [-Wunused-label]
-rqbr.f:279:5:
-
- 279 | 23073 goto 23072
- | 1
-Warning: Label 23073 at (1) defined but not used [-Wunused-label]
-rqbr.f:159:5:
-
- 159 | 23071 continue
- | 1
-Warning: Label 23071 at (1) defined but not used [-Wunused-label]
-rqbr.f:151:5:
-
- 151 | 23059 continue
- | 1
-Warning: Label 23059 at (1) defined but not used [-Wunused-label]
-rqbr.f:281:5:
-
- 281 | 23056 goto 23055
- | 1
-Warning: Label 23056 at (1) defined but not used [-Wunused-label]
-rqbr.f:283:5:
-
- 283 | 23053 goto 23052
- | 1
-Warning: Label 23053 at (1) defined but not used [-Wunused-label]
-rqbr.f:127:5:
-
- 127 | 23049 continue
- | 1
-Warning: Label 23049 at (1) defined but not used [-Wunused-label]
-rqbr.f:491:5:
-
- 491 | 23046 goto 23045
- | 1
-Warning: Label 23046 at (1) defined but not used [-Wunused-label]
-rqbr.f:116:5:
-
- 116 | 23044 continue
- | 1
-Warning: Label 23044 at (1) defined but not used [-Wunused-label]
-rqbr.f:119:5:
-
- 119 | 23042 continue
- | 1
-Warning: Label 23042 at (1) defined but not used [-Wunused-label]
-rqbr.f:104:5:
-
- 104 | 23038 continue
- | 1
-Warning: Label 23038 at (1) defined but not used [-Wunused-label]
-rqbr.f:107:5:
-
- 107 | 23036 continue
- | 1
-Warning: Label 23036 at (1) defined but not used [-Wunused-label]
-rqbr.f:91:5:
-
- 91 | 23034 continue
- | 1
-Warning: Label 23034 at (1) defined but not used [-Wunused-label]
-rqbr.f:78:5:
-
- 78 | 23022 continue
- | 1
-Warning: Label 23022 at (1) defined but not used [-Wunused-label]
-rqbr.f:94:5:
-
- 94 | 23020 continue
- | 1
-Warning: Label 23020 at (1) defined but not used [-Wunused-label]
-rqbr.f:562:5:
-
- 562 | 23017 goto 23016
- | 1
-Warning: Label 23017 at (1) defined but not used [-Wunused-label]
-rqbr.f:54:5:
-
- 54 | 23013 continue
- | 1
-Warning: Label 23013 at (1) defined but not used [-Wunused-label]
-rqbr.f:50:5:
-
- 50 | 23011 continue
- | 1
-Warning: Label 23011 at (1) defined but not used [-Wunused-label]
-rqbr.f:300:10:
-
- 300 | k = wa(i,n4)*sign(one,wa(i,n4))
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:306:11:
-
- 306 | kd = abs(wa(m4,i))-n
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:319:11:
-
- 319 | kd = abs(wa(i,n4))-n
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:357:10:
-
- 357 | k = wa(i,n4)*sign(one,wa(i,n4))
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:365:10:
-
- 365 | k = wa(i,n4)*sign(one,wa(i,n4))-n
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:521:10:
-
- 521 | k = wa(i,n4)*sign(one,wa(i,n4))
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:5:0:
-
- 5 | integer n,n1,n2,n3,nsol,ndsol,out,s(m),h(nn,nsol)
- |
-Warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized]
-rqbr.f:273:0:
-
- 273 | if(wa(m1,in).lt.zero)then
- |
-Warning: 'in' may be used uninitialized in this function [-Wmaybe-uninitialized]
-rqbr.f:483:0:
-
- 483 | if(tnt.ge.t1+toler)then
- |
-Warning: 't1' may be used uninitialized in this function [-Wmaybe-uninitialized]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rqfnb.f -o rqfnb.o
-rqfnb.f:134:5:
-
- 134 | 23029 continue
- | 1
-Warning: Label 23029 at (1) defined but not used [-Wunused-label]
-rqfnb.f:107:5:
-
- 107 | 23027 continue
- | 1
-Warning: Label 23027 at (1) defined but not used [-Wunused-label]
-rqfnb.f:94:5:
-
- 94 | 23015 continue
- | 1
-Warning: Label 23015 at (1) defined but not used [-Wunused-label]
-rqfnb.f:64:5:
-
- 64 | 23011 continue
- | 1
-Warning: Label 23011 at (1) defined but not used [-Wunused-label]
-rqfnb.f:149:5:
-
- 149 | 23009 continue
- | 1
-Warning: Label 23009 at (1) defined but not used [-Wunused-label]
-rqfnb.f:53:5:
-
- 53 | 23005 continue
- | 1
-Warning: Label 23005 at (1) defined but not used [-Wunused-label]
-rqfnb.f:36:5:
-
- 36 | 23001 continue
- | 1
-Warning: Label 23001 at (1) defined but not used [-Wunused-label]
-rqfnb.f:169:5:
-
- 169 | 23043 continue
- | 1
-Warning: Label 23043 at (1) defined but not used [-Wunused-label]
-rqfnb.f:163:5:
-
- 163 | 23041 continue
- | 1
-Warning: Label 23041 at (1) defined but not used [-Wunused-label]
-rqfnb.f:165:5:
-
- 165 | 23039 continue
- | 1
-Warning: Label 23039 at (1) defined but not used [-Wunused-label]
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o quokar.so init.o rqbr.o rqfnb.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [quokar.so] Error 1
-ERROR: compilation failed for package ‘quokar’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quokar/new/quokar.Rcheck/quokar’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘quokar’ ...
-** package ‘quokar’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rqbr.f -o rqbr.o
-rqbr.f:567:5:
-
- 567 | 23243 continue
- | 1
-Warning: Label 23243 at (1) defined but not used [-Wunused-label]
-rqbr.f:527:5:
-
- 527 | 23231 continue
- | 1
-Warning: Label 23231 at (1) defined but not used [-Wunused-label]
-rqbr.f:514:5:
-
- 514 | 23227 continue
- | 1
-Warning: Label 23227 at (1) defined but not used [-Wunused-label]
-rqbr.f:517:5:
-
- 517 | 23223 continue
- | 1
-Warning: Label 23223 at (1) defined but not used [-Wunused-label]
-rqbr.f:506:5:
-
- 506 | 23221 continue
- | 1
-Warning: Label 23221 at (1) defined but not used [-Wunused-label]
-rqbr.f:481:5:
-
- 481 | 23205 continue
- | 1
-Warning: Label 23205 at (1) defined but not used [-Wunused-label]
-rqbr.f:462:5:
-
- 462 | 23203 continue
- | 1
-Warning: Label 23203 at (1) defined but not used [-Wunused-label]
-rqbr.f:458:5:
-
- 458 | 23201 continue
- | 1
-Warning: Label 23201 at (1) defined but not used [-Wunused-label]
-rqbr.f:432:5:
-
- 432 | 23193 continue
- | 1
-Warning: Label 23193 at (1) defined but not used [-Wunused-label]
-rqbr.f:425:5:
-
- 425 | 23191 continue
- | 1
-Warning: Label 23191 at (1) defined but not used [-Wunused-label]
-rqbr.f:375:5:
-
- 375 | 23171 continue
- | 1
-Warning: Label 23171 at (1) defined but not used [-Wunused-label]
-rqbr.f:393:5:
-
- 393 | 23169 continue
- | 1
-Warning: Label 23169 at (1) defined but not used [-Wunused-label]
-rqbr.f:361:5:
-
- 361 | 23167 continue
- | 1
-Warning: Label 23167 at (1) defined but not used [-Wunused-label]
-rqbr.f:348:5:
-
- 348 | 23161 continue
- | 1
-Warning: Label 23161 at (1) defined but not used [-Wunused-label]
-rqbr.f:341:5:
-
- 341 | 23157 continue
- | 1
-Warning: Label 23157 at (1) defined but not used [-Wunused-label]
-rqbr.f:336:5:
-
- 336 | 23155 continue
- | 1
-Warning: Label 23155 at (1) defined but not used [-Wunused-label]
-rqbr.f:327:5:
-
- 327 | 23147 continue
- | 1
-Warning: Label 23147 at (1) defined but not used [-Wunused-label]
-rqbr.f:317:5:
-
- 317 | 23141 continue
- | 1
-Warning: Label 23141 at (1) defined but not used [-Wunused-label]
-rqbr.f:303:5:
-
- 303 | 23139 continue
- | 1
-Warning: Label 23139 at (1) defined but not used [-Wunused-label]
-rqbr.f:294:5:
-
- 294 | 23133 continue
- | 1
-Warning: Label 23133 at (1) defined but not used [-Wunused-label]
-rqbr.f:277:5:
-
- 277 | 23129 continue
- | 1
-Warning: Label 23129 at (1) defined but not used [-Wunused-label]
-rqbr.f:272:5:
-
- 272 | 23121 continue
- | 1
-Warning: Label 23121 at (1) defined but not used [-Wunused-label]
-rqbr.f:258:5:
-
- 258 | 23117 continue
- | 1
-Warning: Label 23117 at (1) defined but not used [-Wunused-label]
-rqbr.f:243:5:
-
- 243 | 23111 continue
- | 1
-Warning: Label 23111 at (1) defined but not used [-Wunused-label]
-rqbr.f:234:5:
-
- 234 | 23107 continue
- | 1
-Warning: Label 23107 at (1) defined but not used [-Wunused-label]
-rqbr.f:237:5:
-
- 237 | 23103 continue
- | 1
-Warning: Label 23103 at (1) defined but not used [-Wunused-label]
-rqbr.f:225:5:
-
- 225 | 23099 continue
- | 1
-Warning: Label 23099 at (1) defined but not used [-Wunused-label]
-rqbr.f:217:5:
-
- 217 | 23097 continue
- | 1
-Warning: Label 23097 at (1) defined but not used [-Wunused-label]
-rqbr.f:208:5:
-
- 208 | 23095 continue
- | 1
-Warning: Label 23095 at (1) defined but not used [-Wunused-label]
-rqbr.f:187:5:
-
- 187 | 23085 continue
- | 1
-Warning: Label 23085 at (1) defined but not used [-Wunused-label]
-rqbr.f:210:5:
-
- 210 | 23080 goto 23079
- | 1
-Warning: Label 23080 at (1) defined but not used [-Wunused-label]
-rqbr.f:174:5:
-
- 174 | 23076 continue
- | 1
-Warning: Label 23076 at (1) defined but not used [-Wunused-label]
-rqbr.f:279:5:
-
- 279 | 23073 goto 23072
- | 1
-Warning: Label 23073 at (1) defined but not used [-Wunused-label]
-rqbr.f:159:5:
-
- 159 | 23071 continue
- | 1
-Warning: Label 23071 at (1) defined but not used [-Wunused-label]
-rqbr.f:151:5:
-
- 151 | 23059 continue
- | 1
-Warning: Label 23059 at (1) defined but not used [-Wunused-label]
-rqbr.f:281:5:
-
- 281 | 23056 goto 23055
- | 1
-Warning: Label 23056 at (1) defined but not used [-Wunused-label]
-rqbr.f:283:5:
-
- 283 | 23053 goto 23052
- | 1
-Warning: Label 23053 at (1) defined but not used [-Wunused-label]
-rqbr.f:127:5:
-
- 127 | 23049 continue
- | 1
-Warning: Label 23049 at (1) defined but not used [-Wunused-label]
-rqbr.f:491:5:
-
- 491 | 23046 goto 23045
- | 1
-Warning: Label 23046 at (1) defined but not used [-Wunused-label]
-rqbr.f:116:5:
-
- 116 | 23044 continue
- | 1
-Warning: Label 23044 at (1) defined but not used [-Wunused-label]
-rqbr.f:119:5:
-
- 119 | 23042 continue
- | 1
-Warning: Label 23042 at (1) defined but not used [-Wunused-label]
-rqbr.f:104:5:
-
- 104 | 23038 continue
- | 1
-Warning: Label 23038 at (1) defined but not used [-Wunused-label]
-rqbr.f:107:5:
-
- 107 | 23036 continue
- | 1
-Warning: Label 23036 at (1) defined but not used [-Wunused-label]
-rqbr.f:91:5:
-
- 91 | 23034 continue
- | 1
-Warning: Label 23034 at (1) defined but not used [-Wunused-label]
-rqbr.f:78:5:
-
- 78 | 23022 continue
- | 1
-Warning: Label 23022 at (1) defined but not used [-Wunused-label]
-rqbr.f:94:5:
-
- 94 | 23020 continue
- | 1
-Warning: Label 23020 at (1) defined but not used [-Wunused-label]
-rqbr.f:562:5:
-
- 562 | 23017 goto 23016
- | 1
-Warning: Label 23017 at (1) defined but not used [-Wunused-label]
-rqbr.f:54:5:
-
- 54 | 23013 continue
- | 1
-Warning: Label 23013 at (1) defined but not used [-Wunused-label]
-rqbr.f:50:5:
-
- 50 | 23011 continue
- | 1
-Warning: Label 23011 at (1) defined but not used [-Wunused-label]
-rqbr.f:300:10:
-
- 300 | k = wa(i,n4)*sign(one,wa(i,n4))
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:306:11:
-
- 306 | kd = abs(wa(m4,i))-n
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:319:11:
-
- 319 | kd = abs(wa(i,n4))-n
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:357:10:
-
- 357 | k = wa(i,n4)*sign(one,wa(i,n4))
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:365:10:
-
- 365 | k = wa(i,n4)*sign(one,wa(i,n4))-n
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:521:10:
-
- 521 | k = wa(i,n4)*sign(one,wa(i,n4))
- | 1
-Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion]
-rqbr.f:5:0:
-
- 5 | integer n,n1,n2,n3,nsol,ndsol,out,s(m),h(nn,nsol)
- |
-Warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized]
-rqbr.f:273:0:
-
- 273 | if(wa(m1,in).lt.zero)then
- |
-Warning: 'in' may be used uninitialized in this function [-Wmaybe-uninitialized]
-rqbr.f:483:0:
-
- 483 | if(tnt.ge.t1+toler)then
- |
-Warning: 't1' may be used uninitialized in this function [-Wmaybe-uninitialized]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rqfnb.f -o rqfnb.o
-rqfnb.f:134:5:
-
- 134 | 23029 continue
- | 1
-Warning: Label 23029 at (1) defined but not used [-Wunused-label]
-rqfnb.f:107:5:
-
- 107 | 23027 continue
- | 1
-Warning: Label 23027 at (1) defined but not used [-Wunused-label]
-rqfnb.f:94:5:
-
- 94 | 23015 continue
- | 1
-Warning: Label 23015 at (1) defined but not used [-Wunused-label]
-rqfnb.f:64:5:
-
- 64 | 23011 continue
- | 1
-Warning: Label 23011 at (1) defined but not used [-Wunused-label]
-rqfnb.f:149:5:
-
- 149 | 23009 continue
- | 1
-Warning: Label 23009 at (1) defined but not used [-Wunused-label]
-rqfnb.f:53:5:
-
- 53 | 23005 continue
- | 1
-Warning: Label 23005 at (1) defined but not used [-Wunused-label]
-rqfnb.f:36:5:
-
- 36 | 23001 continue
- | 1
-Warning: Label 23001 at (1) defined but not used [-Wunused-label]
-rqfnb.f:169:5:
-
- 169 | 23043 continue
- | 1
-Warning: Label 23043 at (1) defined but not used [-Wunused-label]
-rqfnb.f:163:5:
-
- 163 | 23041 continue
- | 1
-Warning: Label 23041 at (1) defined but not used [-Wunused-label]
-rqfnb.f:165:5:
-
- 165 | 23039 continue
- | 1
-Warning: Label 23039 at (1) defined but not used [-Wunused-label]
-clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o quokar.so init.o rqbr.o rqfnb.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [quokar.so] Error 1
-ERROR: compilation failed for package ‘quokar’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quokar/old/quokar.Rcheck/quokar’
-
-```
-# qwraps2
-
-
-
-* Version: 0.4.2
-* Source code: https://github.com/cran/qwraps2
-* URL: https://github.com/dewittpe/qwraps2/
-* Date/Publication: 2019-12-02 20:40:13 UTC
-* Number of recursive dependencies: 76
-
-Run `revdep_details(,"qwraps2")` for more info
-
-
-
-## In both
-
-* checking whether package ‘qwraps2’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qwraps2/new/qwraps2.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘qwraps2’ ...
-** package ‘qwraps2’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c logit.cpp -o logit.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c traprule.cpp -o traprule.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qwraps2.so RcppExports.o logit.o traprule.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [qwraps2.so] Error 1
-ERROR: compilation failed for package ‘qwraps2’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qwraps2/new/qwraps2.Rcheck/qwraps2’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘qwraps2’ ...
-** package ‘qwraps2’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c logit.cpp -o logit.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c traprule.cpp -o traprule.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qwraps2.so RcppExports.o logit.o traprule.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [qwraps2.so] Error 1
-ERROR: compilation failed for package ‘qwraps2’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qwraps2/old/qwraps2.Rcheck/qwraps2’
-
-```
-# Rariant
-
-
-
-* Version: 1.24.0
-* Source code: https://github.com/cran/Rariant
-* URL: https://github.com/juliangehring/Rariant
-* BugReports: https://support.bioconductor.org
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 167
-
-Run `revdep_details(,"Rariant")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘Rariant’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Rariant/new/Rariant.Rcheck/00install.out’ for details.
- ```
-
-## Newly fixed
-
-* checking examples ... WARNING
- ```
- Found the following significant warnings:
-
- Warning: 'rbind_all' is deprecated.
- Deprecated functions may be defunct as soon as of the next release of
- R.
- See ?Deprecated.
- ```
-
-* checking installed package size ... NOTE
- ```
- installed size is 7.7Mb
- sub-directories of 1Mb or more:
- doc 2.2Mb
- extdata 5.2Mb
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- tallyBamRegion: no visible global function definition for 'PileupParam'
- tallyBamRegion: no visible global function definition for
- 'ScanBamParam'
- tallyBamRegion: no visible global function definition for 'pileup'
- Undefined global functions or variables:
- PileupParam ScanBamParam pileup
- ```
-
-* checking installed files from ‘inst/doc’ ... NOTE
- ```
- The following files should probably not be installed:
- ‘rariant-inspect-ci.png’, ‘rariant-inspect-shift.png’
-
- Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
- or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘Rariant’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object 'rbind_all' is not exported by 'namespace:dplyr'
-Execution halted
-ERROR: lazy loading failed for package ‘Rariant’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Rariant/new/Rariant.Rcheck/Rariant’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘Rariant’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (Rariant)
-
-```
-# rbridge
-
-
-
-* Version: 1.0.2
-* Source code: https://github.com/cran/rbridge
-* Date/Publication: 2020-02-29 11:40:03 UTC
-* Number of recursive dependencies: 39
-
-Run `revdep_details(,"rbridge")` for more info
-
-
-
-## In both
-
-* checking whether package ‘rbridge’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rbridge/new/rbridge.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rbridge’ ...
-** package ‘rbridge’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Main_functions.cpp -o Main_functions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rbridge.so Main_functions.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [rbridge.so] Error 1
-ERROR: compilation failed for package ‘rbridge’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rbridge/new/rbridge.Rcheck/rbridge’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘rbridge’ ...
-** package ‘rbridge’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Main_functions.cpp -o Main_functions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rbridge.so Main_functions.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [rbridge.so] Error 1
-ERROR: compilation failed for package ‘rbridge’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rbridge/old/rbridge.Rcheck/rbridge’
-
-```
-# registr
-
-
-
-* Version: 1.0.0
-* Source code: https://github.com/cran/registr
-* Date/Publication: 2020-03-16 11:40:02 UTC
-* Number of recursive dependencies: 67
-
-Run `revdep_details(,"registr")` for more info
-
-
-
-## In both
-
-* checking whether package ‘registr’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/registr/new/registr.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘registr’ ...
-** package ‘registr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expectedScores.cpp -o expectedScores.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expectedXi.cpp -o expectedXi.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c squareTheta.cpp -o squareTheta.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o registr.so RcppExports.o expectedScores.o expectedXi.o squareTheta.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib -lpcre2-8 -llzma -lbz2 -lz -licucore -ldl -lm -liconv -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lpcre2-8
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [registr.so] Error 1
-ERROR: compilation failed for package ‘registr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/registr/new/registr.Rcheck/registr’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘registr’ ...
-** package ‘registr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expectedScores.cpp -o expectedScores.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expectedXi.cpp -o expectedXi.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c squareTheta.cpp -o squareTheta.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o registr.so RcppExports.o expectedScores.o expectedXi.o squareTheta.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib -lpcre2-8 -llzma -lbz2 -lz -licucore -ldl -lm -liconv -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lpcre2-8
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [registr.so] Error 1
-ERROR: compilation failed for package ‘registr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/registr/old/registr.Rcheck/registr’
-
-```
-# resautonet
-
-
-
-* Version: 1.0
-* Source code: https://github.com/cran/resautonet
-* Date/Publication: 2019-03-16 23:00:08 UTC
-* Number of recursive dependencies: 41
-
-Run `revdep_details(,"resautonet")` for more info
-
-
-
-## In both
-
-* checking whether package ‘resautonet’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/resautonet/new/resautonet.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘resautonet’ ...
-** package ‘resautonet’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rcpparma_hello_world.cpp -o rcpparma_hello_world.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o resautonet.so RcppExports.o rcpparma_hello_world.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [resautonet.so] Error 1
-ERROR: compilation failed for package ‘resautonet’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/resautonet/new/resautonet.Rcheck/resautonet’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘resautonet’ ...
-** package ‘resautonet’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rcpparma_hello_world.cpp -o rcpparma_hello_world.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o resautonet.so RcppExports.o rcpparma_hello_world.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [resautonet.so] Error 1
-ERROR: compilation failed for package ‘resautonet’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/resautonet/old/resautonet.Rcheck/resautonet’
-
-```
-# rnaseqGene
-
-
-
-* Version: 1.12.0
-* Source code: https://github.com/cran/rnaseqGene
-* URL: https://github.com/mikelove/rnaseqGene/
-* Date/Publication: 2020-04-28
-* Number of recursive dependencies: 207
-
-Run `revdep_details(,"rnaseqGene")` for more info
-
-
-
-## In both
-
-* checking whether package ‘rnaseqGene’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rnaseqGene/new/rnaseqGene.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Depends: includes the non-default packages:
- 'BiocStyle', 'airway', 'tximeta', 'magrittr', 'DESeq2', 'apeglm',
- 'vsn', 'dplyr', 'ggplot2', 'hexbin', 'pheatmap', 'RColorBrewer',
- 'PoiClaClu', 'glmpca', 'ggbeeswarm', 'genefilter', 'AnnotationDbi',
- 'org.Hs.eg.db', 'ReportingTools', 'Gviz', 'sva', 'RUVSeq', 'fission'
- Adding so many packages to the search path is excessive and importing
- selectively is preferable.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘rnaseqGene’ ...
-** using staged installation
-** inst
-** help
-No man pages found in package ‘rnaseqGene’
-*** installing help indices
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-Error: package or namespace load failed for 'EDASeq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- there is no package called 'DESeq'
-Error : package 'EDASeq' could not be loaded
-Error: loading failed
-Execution halted
-ERROR: loading failed
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rnaseqGene/new/rnaseqGene.Rcheck/rnaseqGene’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘rnaseqGene’ ...
-** using staged installation
-** inst
-** help
-No man pages found in package ‘rnaseqGene’
-*** installing help indices
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-Error: package or namespace load failed for 'EDASeq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
- there is no package called 'DESeq'
-Error : package 'EDASeq' could not be loaded
-Error: loading failed
-Execution halted
-ERROR: loading failed
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rnaseqGene/old/rnaseqGene.Rcheck/rnaseqGene’
-
-```
-# RSSL
-
-
-
-* Version: 0.9.1
-* Source code: https://github.com/cran/RSSL
-* URL: http://www.github.com/jkrijthe/RSSL
-* BugReports: http://www.github.com/jkrijthe/RSSL
-* Date/Publication: 2020-02-04 10:20:07 UTC
-* Number of recursive dependencies: 74
-
-Run `revdep_details(,"RSSL")` for more info
-
-
-
-## In both
-
-* checking whether package ‘RSSL’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RSSL/new/RSSL.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘RSSL’ ...
-** package ‘RSSL’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c GRFClassifier.cpp -o GRFClassifier.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c Rsvm.c -o Rsvm.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ssl.cpp -o ssl.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c svm.cpp -o svm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c svmlin_rcpp.cpp -o svmlin_rcpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RSSL.so GRFClassifier.o RcppExports.o Rsvm.o init.o ssl.o svm.o svmlin_rcpp.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [RSSL.so] Error 1
-ERROR: compilation failed for package ‘RSSL’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RSSL/new/RSSL.Rcheck/RSSL’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘RSSL’ ...
-** package ‘RSSL’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c GRFClassifier.cpp -o GRFClassifier.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c Rsvm.c -o Rsvm.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ssl.cpp -o ssl.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c svm.cpp -o svm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c svmlin_rcpp.cpp -o svmlin_rcpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RSSL.so GRFClassifier.o RcppExports.o Rsvm.o init.o ssl.o svm.o svmlin_rcpp.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [RSSL.so] Error 1
-ERROR: compilation failed for package ‘RSSL’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RSSL/old/RSSL.Rcheck/RSSL’
-
-```
-# RxODE
-
-
-
-* Version: 0.9.2-0
-* Source code: https://github.com/cran/RxODE
-* URL: https://nlmixrdevelopment.github.io/RxODE/
-* BugReports: https://github.com/nlmixrdevelopment/RxODE/issues
-* Date/Publication: 2020-03-13 07:10:14 UTC
-* Number of recursive dependencies: 132
-
-Run `revdep_details(,"RxODE")` for more info
-
-
-
-## In both
-
-* checking whether package ‘RxODE’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RxODE/new/RxODE.Rcheck/00install.out’ for details.
- ```
-
-* checking package dependencies ... NOTE
- ```
- Packages suggested but not available for checking:
- 'SnakeCharmR', 'installr'
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘RxODE’ ...
-** package ‘RxODE’ successfully unpacked and MD5 sums checked
-** using staged installation
-checking for gcc... clang -mmacosx-version-min=10.13
-checking whether the C compiler works... yes
-checking for C compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether clang -mmacosx-version-min=10.13 accepts -g... yes
-checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed
-checking for clang -mmacosx-version-min=10.13 option to support OpenMP... unsupported
-configure: creating ./config.status
-config.status: creating src/Makevars
---------[begin src/Makevars]--------
-# -*- mode: makefile-gmake -*-
-CXX_STD = CXX11
-
-################################################################################
-## Package library flags.
-PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
-
-# Release options
-PKG_CFLAGS = -D_isRxODE_
-PKG_CXXFLAGS = -D_isRxODE_
-
-
-SOURCES_C = call_dvode.c dop853.c tran.c omegaChol.c init.c par_solve.c cfode.c common.c corfailure.c correction.c daxpy.c ddot.c dgefa.c dgesl.c dscal.c fnorm.c idamax.c intdy.c lsoda.c methodswitch.c orderswitch.c prja.c scaleh.c solsy.c stoda.c vmnorm.c strdup_printf.c rprintf.c lincmt.c box.c
-SOURCES_CPP = RcppExports.cpp WinDrive.cpp rxInv.cpp rxData.cpp etTran.cpp et.cpp rxStack.cpp cvPost.cpp
-SOURCES_FORTAN = dlsoda.f opkda2.f
-
-OBJECTS = $(SOURCES_C:.c=.o) $(SOURCES_FORTAN:.f=.o) $(SOURCES_CPP:.cpp=.o)
-
-# strippedLib: $(SHLIB)
-# if test -e "/usr/bin/strip"; then /usr/bin/strip -s $(SHLIB); fi
-
-.PHONY: all
-# all: strippedLib
-# $(SHLIB): mylibs
-all: $(SHLIB)
-# mylibs:
-# $(CC) -I"$(R_INCLUDE_DIR)" $(CFLAGS) $(CPPFLAGS) $(SHLIB_CFLAGS) $(CPICFLAGS) -I../inst/include/ ../inst/include/RxODE_model.h || $(CC) --version
-
-
---------[end src/Makevars]--------
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c call_dvode.c -o call_dvode.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dop853.c -o dop853.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c tran.c -o tran.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c omegaChol.c -o omegaChol.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c init.c -o init.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c par_solve.c -o par_solve.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c cfode.c -o cfode.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c common.c -o common.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c corfailure.c -o corfailure.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c correction.c -o correction.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c daxpy.c -o daxpy.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c ddot.c -o ddot.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dgefa.c -o dgefa.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dgesl.c -o dgesl.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dscal.c -o dscal.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c fnorm.c -o fnorm.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c idamax.c -o idamax.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c intdy.c -o intdy.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c lsoda.c -o lsoda.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c methodswitch.c -o methodswitch.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c orderswitch.c -o orderswitch.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c prja.c -o prja.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c scaleh.c -o scaleh.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c solsy.c -o solsy.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c stoda.c -o stoda.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c vmnorm.c -o vmnorm.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c strdup_printf.c -o strdup_printf.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c rprintf.c -o rprintf.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c lincmt.c -o lincmt.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c box.c -o box.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c dlsoda.f -o dlsoda.o
-dlsoda.f:705:0:
-
- 705 | IF (IREDO .EQ. 0) GO TO 690
- |
-Warning: 'iredo' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:679:0:
-
- 679 | 170 RH = MAX(RH,HMIN/ABS(H))
- |
-Warning: 'rh' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2874:0:
-
- 2874 | IF (IHIT) T = TCRIT
- |
-Warning: 'tcrit' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2874:0: Warning: 'ihit' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2615:0:
-
- 2615 | IF (H0 .NE. 0.0D0 .AND. (T + H0 - TCRIT)*H0 .GT. 0.0D0)
- |
-Warning: 'h0' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2537:0:
-
- 2537 | LEN1S = LEN1S + LENWM
- |
-Warning: 'lenwm' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2536:0:
-
- 2536 | IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2
- |
-Warning: 'mu' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2536:0: Warning: 'ml' may be used uninitialized in this function [-Wmaybe-uninitialized]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c opkda2.f -o opkda2.o
-opkda2.f:650:0:
-
- 650 | INTEGER FUNCTION IXSAV (IPAR, IVALUE, ISET)
- |
-Warning: '__result_ixsav' may be used uninitialized in this function [-Wmaybe-uninitialized]
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c WinDrive.cpp -o WinDrive.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxInv.cpp -o rxInv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxData.cpp -o rxData.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c etTran.cpp -o etTran.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c et.cpp -o et.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxStack.cpp -o rxStack.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c cvPost.cpp -o cvPost.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RxODE.so call_dvode.o dop853.o tran.o omegaChol.o init.o par_solve.o cfode.o common.o corfailure.o correction.o daxpy.o ddot.o dgefa.o dgesl.o dscal.o fnorm.o idamax.o intdy.o lsoda.o methodswitch.o orderswitch.o prja.o scaleh.o solsy.o stoda.o vmnorm.o strdup_printf.o rprintf.o lincmt.o box.o dlsoda.o opkda2.o RcppExports.o WinDrive.o rxInv.o rxData.o etTran.o et.o rxStack.o cvPost.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [RxODE.so] Error 1
-ERROR: compilation failed for package ‘RxODE’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RxODE/new/RxODE.Rcheck/RxODE’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘RxODE’ ...
-** package ‘RxODE’ successfully unpacked and MD5 sums checked
-** using staged installation
-checking for gcc... clang -mmacosx-version-min=10.13
-checking whether the C compiler works... yes
-checking for C compiler default output file name... a.out
-checking for suffix of executables...
-checking whether we are cross compiling... no
-checking for suffix of object files... o
-checking whether we are using the GNU C compiler... yes
-checking whether clang -mmacosx-version-min=10.13 accepts -g... yes
-checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed
-checking for clang -mmacosx-version-min=10.13 option to support OpenMP... unsupported
-configure: creating ./config.status
-config.status: creating src/Makevars
---------[begin src/Makevars]--------
-# -*- mode: makefile-gmake -*-
-CXX_STD = CXX11
-
-################################################################################
-## Package library flags.
-PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
-
-# Release options
-PKG_CFLAGS = -D_isRxODE_
-PKG_CXXFLAGS = -D_isRxODE_
-
-
-SOURCES_C = call_dvode.c dop853.c tran.c omegaChol.c init.c par_solve.c cfode.c common.c corfailure.c correction.c daxpy.c ddot.c dgefa.c dgesl.c dscal.c fnorm.c idamax.c intdy.c lsoda.c methodswitch.c orderswitch.c prja.c scaleh.c solsy.c stoda.c vmnorm.c strdup_printf.c rprintf.c lincmt.c box.c
-SOURCES_CPP = RcppExports.cpp WinDrive.cpp rxInv.cpp rxData.cpp etTran.cpp et.cpp rxStack.cpp cvPost.cpp
-SOURCES_FORTAN = dlsoda.f opkda2.f
-
-OBJECTS = $(SOURCES_C:.c=.o) $(SOURCES_FORTAN:.f=.o) $(SOURCES_CPP:.cpp=.o)
-
-# strippedLib: $(SHLIB)
-# if test -e "/usr/bin/strip"; then /usr/bin/strip -s $(SHLIB); fi
-
-.PHONY: all
-# all: strippedLib
-# $(SHLIB): mylibs
-all: $(SHLIB)
-# mylibs:
-# $(CC) -I"$(R_INCLUDE_DIR)" $(CFLAGS) $(CPPFLAGS) $(SHLIB_CFLAGS) $(CPICFLAGS) -I../inst/include/ ../inst/include/RxODE_model.h || $(CC) --version
-
-
---------[end src/Makevars]--------
-** libs
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c call_dvode.c -o call_dvode.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dop853.c -o dop853.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c tran.c -o tran.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c omegaChol.c -o omegaChol.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c init.c -o init.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c par_solve.c -o par_solve.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c cfode.c -o cfode.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c common.c -o common.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c corfailure.c -o corfailure.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c correction.c -o correction.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c daxpy.c -o daxpy.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c ddot.c -o ddot.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dgefa.c -o dgefa.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dgesl.c -o dgesl.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dscal.c -o dscal.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c fnorm.c -o fnorm.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c idamax.c -o idamax.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c intdy.c -o intdy.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c lsoda.c -o lsoda.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c methodswitch.c -o methodswitch.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c orderswitch.c -o orderswitch.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c prja.c -o prja.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c scaleh.c -o scaleh.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c solsy.c -o solsy.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c stoda.c -o stoda.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c vmnorm.c -o vmnorm.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c strdup_printf.c -o strdup_printf.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c rprintf.c -o rprintf.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c lincmt.c -o lincmt.o
-clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c box.c -o box.o
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c dlsoda.f -o dlsoda.o
-dlsoda.f:705:0:
-
- 705 | IF (IREDO .EQ. 0) GO TO 690
- |
-Warning: 'iredo' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:679:0:
-
- 679 | 170 RH = MAX(RH,HMIN/ABS(H))
- |
-Warning: 'rh' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2874:0:
-
- 2874 | IF (IHIT) T = TCRIT
- |
-Warning: 'tcrit' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2874:0: Warning: 'ihit' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2615:0:
-
- 2615 | IF (H0 .NE. 0.0D0 .AND. (T + H0 - TCRIT)*H0 .GT. 0.0D0)
- |
-Warning: 'h0' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2537:0:
-
- 2537 | LEN1S = LEN1S + LENWM
- |
-Warning: 'lenwm' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2536:0:
-
- 2536 | IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2
- |
-Warning: 'mu' may be used uninitialized in this function [-Wmaybe-uninitialized]
-dlsoda.f:2536:0: Warning: 'ml' may be used uninitialized in this function [-Wmaybe-uninitialized]
-gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c opkda2.f -o opkda2.o
-opkda2.f:650:0:
-
- 650 | INTEGER FUNCTION IXSAV (IPAR, IVALUE, ISET)
- |
-Warning: '__result_ixsav' may be used uninitialized in this function [-Wmaybe-uninitialized]
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c WinDrive.cpp -o WinDrive.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxInv.cpp -o rxInv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxData.cpp -o rxData.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c etTran.cpp -o etTran.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c et.cpp -o et.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxStack.cpp -o rxStack.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c cvPost.cpp -o cvPost.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RxODE.so call_dvode.o dop853.o tran.o omegaChol.o init.o par_solve.o cfode.o common.o corfailure.o correction.o daxpy.o ddot.o dgefa.o dgesl.o dscal.o fnorm.o idamax.o intdy.o lsoda.o methodswitch.o orderswitch.o prja.o scaleh.o solsy.o stoda.o vmnorm.o strdup_printf.o rprintf.o lincmt.o box.o dlsoda.o opkda2.o RcppExports.o WinDrive.o rxInv.o rxData.o etTran.o et.o rxStack.o cvPost.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [RxODE.so] Error 1
-ERROR: compilation failed for package ‘RxODE’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RxODE/old/RxODE.Rcheck/RxODE’
-
-```
-# sarima
-
-
-
-* Version: 0.8.2
-* Source code: https://github.com/cran/sarima
-* URL: https://github.com/GeoBosh/sarima https://geobosh.github.io/sarima/
-* BugReports: https://github.com/GeoBosh/sarima/issues
-* Date/Publication: 2020-03-02 10:30:02 UTC
-* Number of recursive dependencies: 73
-
-Run `revdep_details(,"sarima")` for more info
-
-
-
-## In both
-
-* checking whether package ‘sarima’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/sarima/new/sarima.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘sarima’ ...
-** package ‘sarima’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Kalman0b.cpp -o Kalman0b.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c arimaQ0.cpp -o arimaQ0.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o sarima.so Kalman0b.o RcppExports.o arimaQ0.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [sarima.so] Error 1
-ERROR: compilation failed for package ‘sarima’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/sarima/new/sarima.Rcheck/sarima’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘sarima’ ...
-** package ‘sarima’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Kalman0b.cpp -o Kalman0b.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c arimaQ0.cpp -o arimaQ0.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o sarima.so Kalman0b.o RcppExports.o arimaQ0.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [sarima.so] Error 1
-ERROR: compilation failed for package ‘sarima’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/sarima/old/sarima.Rcheck/sarima’
-
-```
-# scanstatistics
-
-
-
-* Version: 1.0.1
-* Source code: https://github.com/cran/scanstatistics
-* URL: https://github.com/BenjaK/scanstatistics
-* BugReports: https://github.com/BenjaK/scanstatistics/issues
-* Date/Publication: 2018-01-24 12:37:44 UTC
-* Number of recursive dependencies: 83
-
-Run `revdep_details(,"scanstatistics")` for more info
-
-
-
-## In both
-
-* checking whether package ‘scanstatistics’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scanstatistics/new/scanstatistics.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘scanstatistics’ ...
-** package ‘scanstatistics’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c probability_functions.cpp -o probability_functions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_bayes_negbin.cpp -o scan_bayes_negbin.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_negbin.cpp -o scan_eb_negbin.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_poisson.cpp -o scan_eb_poisson.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_zip.cpp -o scan_eb_zip.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_pb_perm.cpp -o scan_pb_perm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_pb_poisson.cpp -o scan_pb_poisson.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_utility.cpp -o scan_utility.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scanstatistics.so RcppExports.o probability_functions.o scan_bayes_negbin.o scan_eb_negbin.o scan_eb_poisson.o scan_eb_zip.o scan_pb_perm.o scan_pb_poisson.o scan_utility.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [scanstatistics.so] Error 1
-ERROR: compilation failed for package ‘scanstatistics’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scanstatistics/new/scanstatistics.Rcheck/scanstatistics’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘scanstatistics’ ...
-** package ‘scanstatistics’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c probability_functions.cpp -o probability_functions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_bayes_negbin.cpp -o scan_bayes_negbin.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_negbin.cpp -o scan_eb_negbin.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_poisson.cpp -o scan_eb_poisson.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_zip.cpp -o scan_eb_zip.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_pb_perm.cpp -o scan_pb_perm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_pb_poisson.cpp -o scan_pb_poisson.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_utility.cpp -o scan_utility.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scanstatistics.so RcppExports.o probability_functions.o scan_bayes_negbin.o scan_eb_negbin.o scan_eb_poisson.o scan_eb_zip.o scan_pb_perm.o scan_pb_poisson.o scan_utility.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [scanstatistics.so] Error 1
-ERROR: compilation failed for package ‘scanstatistics’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scanstatistics/old/scanstatistics.Rcheck/scanstatistics’
-
-```
-# scfind
-
-
-
-* Version: 1.9.0
-* Source code: https://github.com/cran/scfind
-* URL: https://github.com/hemberg-lab/scfind
-* BugReports: https://support.bioconductor.org/t/scfind/
-* Date/Publication: 2019-10-29
-* Number of recursive dependencies: 70
-
-Run `revdep_details(,"scfind")` for more info
-
-
-
-## In both
-
-* checking whether package ‘scfind’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scfind/new/scfind.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘scfind’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scfind/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scfind/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c eliasFano.cpp -o eliasFano.o
-eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable]
- int rem;
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scfind.so RcppExports.o eliasFano.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [scfind.so] Error 1
-ERROR: compilation failed for package ‘scfind’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scfind/new/scfind.Rcheck/scfind’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘scfind’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c eliasFano.cpp -o eliasFano.o
-eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable]
- int rem;
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scfind.so RcppExports.o eliasFano.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [scfind.so] Error 1
-ERROR: compilation failed for package ‘scfind’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scfind/old/scfind.Rcheck/scfind’
-
-```
-# scGPS
-
-
-
-* Version:
-* Source code: ???
-* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr
-* BugReports: https://github.com/tidyverse/dplyr/issues
-* Number of recursive dependencies: 0
-
-Run `revdep_details(,"")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-RcppParallel 5.0.0 5.0.1 TRUE
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
- These will not be installed
-
-
-Package which is only available in source form, and may need
- compilation of C/C++/Fortran: ‘DESeq’
-installing the source package ‘reactome.db’
-
-
-
-```
-### CRAN
-
-```
-
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-RcppParallel 5.0.0 5.0.1 TRUE
-tidyr 1.0.2 1.0.3 TRUE
-
- Binaries will be installed
- These will not be installed
-
-
-Package which is only available in source form, and may need
- compilation of C/C++/Fortran: ‘DESeq’
-installing the source package ‘reactome.db’
-
-
-
-```
-# scmap
-
-
-
-* Version: 1.10.0
-* Source code: https://github.com/cran/scmap
-* URL: https://github.com/hemberg-lab/scmap
-* BugReports: https://support.bioconductor.org/t/scmap/
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 87
-
-Run `revdep_details(,"scmap")` for more info
-
-
-
-## In both
-
-* checking whether package ‘scmap’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scmap/new/scmap.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘scmap’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scmap.cpp -o scmap.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scmap.so RcppExports.o scmap.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [scmap.so] Error 1
-ERROR: compilation failed for package ‘scmap’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scmap/new/scmap.Rcheck/scmap’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘scmap’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scmap.cpp -o scmap.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scmap.so RcppExports.o scmap.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [scmap.so] Error 1
-ERROR: compilation failed for package ‘scmap’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scmap/old/scmap.Rcheck/scmap’
-
-```
-# SCORPIUS
-
-
-
-* Version: 1.0.6
-* Source code: https://github.com/cran/SCORPIUS
-* URL: http://github.com/rcannood/SCORPIUS
-* BugReports: https://github.com/rcannood/SCORPIUS/issues
-* Date/Publication: 2020-03-16 16:20:02 UTC
-* Number of recursive dependencies: 116
-
-Run `revdep_details(,"SCORPIUS")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘SCORPIUS’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCORPIUS/new/SCORPIUS.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SCORPIUS’ ...
-** package ‘SCORPIUS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘as.tbl_cube’ is not exported by 'namespace:dplyr'
-Execution halted
-ERROR: lazy loading failed for package ‘SCORPIUS’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCORPIUS/new/SCORPIUS.Rcheck/SCORPIUS’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SCORPIUS’ ...
-** package ‘SCORPIUS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (SCORPIUS)
-
-```
-# SCPME
-
-
-
-* Version: 1.0
-* Source code: https://github.com/cran/SCPME
-* URL: https://github.com/MGallow/SCPME
-* BugReports: https://github.com/MGallow/SCPME/issues
-* Date/Publication: 2018-08-13 09:00:09 UTC
-* Number of recursive dependencies: 84
-
-Run `revdep_details(,"SCPME")` for more info
-
-
-
-## In both
-
-* checking whether package ‘SCPME’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCPME/new/SCPME.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SCPME’ ...
-** package ‘SCPME’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c ADMM.cpp -o ADMM.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CV.cpp -o CV.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CVP.cpp -o CVP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c soft.cpp -o soft.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SCPME.so ADMM.o CV.o CVP.o RcppExports.o soft.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [SCPME.so] Error 1
-ERROR: compilation failed for package ‘SCPME’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCPME/new/SCPME.Rcheck/SCPME’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SCPME’ ...
-** package ‘SCPME’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c ADMM.cpp -o ADMM.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CV.cpp -o CV.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CVP.cpp -o CVP.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c soft.cpp -o soft.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SCPME.so ADMM.o CV.o CVP.o RcppExports.o soft.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [SCPME.so] Error 1
-ERROR: compilation failed for package ‘SCPME’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCPME/old/SCPME.Rcheck/SCPME’
-
-```
-# selectKSigs
-
-
-
-* Version: 1.0.0
-* Source code: https://github.com/cran/selectKSigs
-* URL: https://github.com/USCbiostats/selectKSigs
-* BugReports: https://github.com/USCbiostats/HiLDA/selectKSigs
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 126
-
-Run `revdep_details(,"selectKSigs")` for more info
-
-
-
-## In both
-
-* checking whether package ‘selectKSigs’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/selectKSigs/new/selectKSigs.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘selectKSigs’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c EMalgorithm.cpp -o EMalgorithm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c convertFromToVector.cpp -o convertFromToVector.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o selectKSigs.so EMalgorithm.o RcppExports.o convertFromToVector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-installing to /Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/selectKSigs/new/selectKSigs.Rcheck/00LOCK-selectKSigs/00new/selectKSigs/libs
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so
- Reason: image not found
-Execution halted
-ERROR: lazy loading failed for package ‘selectKSigs’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/selectKSigs/new/selectKSigs.Rcheck/selectKSigs’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘selectKSigs’ ...
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c EMalgorithm.cpp -o EMalgorithm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c convertFromToVector.cpp -o convertFromToVector.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o selectKSigs.so EMalgorithm.o RcppExports.o convertFromToVector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-installing to /Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/selectKSigs/old/selectKSigs.Rcheck/00LOCK-selectKSigs/00new/selectKSigs/libs
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: .onLoad failed in loadNamespace() for 'rjags', details:
- call: dyn.load(file, DLLpath = DLLpath, ...)
- error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so
- Reason: image not found
-Execution halted
-ERROR: lazy loading failed for package ‘selectKSigs’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/selectKSigs/old/selectKSigs.Rcheck/selectKSigs’
-
-```
-# SimBIID
-
-
-
-* Version: 0.1.4
-* Source code: https://github.com/cran/SimBIID
-* URL: https://github.com/tjmckinley/SimBIID
-* BugReports: https://github.com/tjmckinley/SimBIID/issues
-* Date/Publication: 2020-03-03 11:40:05 UTC
-* Number of recursive dependencies: 62
-
-Run `revdep_details(,"SimBIID")` for more info
-
-
-
-## In both
-
-* checking whether package ‘SimBIID’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SimBIID/new/SimBIID.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SimBIID’ ...
-** package ‘SimBIID’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c adaptUpdate.cpp -o adaptUpdate.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrapParticleFilter.cpp -o bootstrapParticleFilter.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrapParticleFilterState.cpp -o bootstrapParticleFilterState.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c cholArma.cpp -o cholArma.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c mvrnormArma.cpp -o mvrnormArma.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pmcmc.cpp -o pmcmc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SimBIID.so RcppExports.o adaptUpdate.o bootstrapParticleFilter.o bootstrapParticleFilterState.o cholArma.o mvrnormArma.o pmcmc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [SimBIID.so] Error 1
-ERROR: compilation failed for package ‘SimBIID’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SimBIID/new/SimBIID.Rcheck/SimBIID’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SimBIID’ ...
-** package ‘SimBIID’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c adaptUpdate.cpp -o adaptUpdate.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrapParticleFilter.cpp -o bootstrapParticleFilter.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrapParticleFilterState.cpp -o bootstrapParticleFilterState.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c cholArma.cpp -o cholArma.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c mvrnormArma.cpp -o mvrnormArma.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pmcmc.cpp -o pmcmc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SimBIID.so RcppExports.o adaptUpdate.o bootstrapParticleFilter.o bootstrapParticleFilterState.o cholArma.o mvrnormArma.o pmcmc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [SimBIID.so] Error 1
-ERROR: compilation failed for package ‘SimBIID’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SimBIID/old/SimBIID.Rcheck/SimBIID’
-
-```
-# simts
-
-
-
-* Version: 0.1.1
-* Source code: https://github.com/cran/simts
-* URL: https://github.com/SMAC-Group/simts, https://arxiv.org/pdf/1607.04543.pdf
-* BugReports: https://github.com/SMAC-Group/simts/issues
-* Date/Publication: 2019-07-21 22:20:02 UTC
-* Number of recursive dependencies: 53
-
-Run `revdep_details(,"simts")` for more info
-
-
-
-## In both
-
-* checking whether package ‘simts’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/simts/new/simts.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘simts’ ...
-** package ‘simts’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c additional_moments.cpp -o additional_moments.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c analytical_matrix_derivatives.cpp -o analytical_matrix_derivatives.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c arima_gmwm.cpp -o arima_gmwm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c armadillo_manipulations.cpp -o armadillo_manipulations.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c automatic_models.cpp -o automatic_models.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrappers.cpp -o bootstrappers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c complex_tools.cpp -o complex_tools.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c covariance_matrix.cpp -o covariance_matrix.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dwt.cpp -o dwt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gen_process.cpp -o gen_process.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gmwm_logic.cpp -o gmwm_logic.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c guess_values.cpp -o guess_values.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c idf_example.cpp -o idf_example.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c inference.cpp -o inference.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c lm.cpp -o lm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c model_selection.cpp -o model_selection.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c obj_mod.cpp -o obj_mod.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c objective_functions.cpp -o objective_functions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c polyroot.cpp -o polyroot.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c process_to_wv.cpp -o process_to_wv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c read_imu.cpp -o read_imu.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c robust_components.cpp -o robust_components.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rtoarmadillo.cpp -o rtoarmadillo.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rtruncated_normal.cpp -o rtruncated_normal.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sampler.cpp -o sampler.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sarma.cpp -o sarma.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c summary_inf_mod.cpp -o summary_inf_mod.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c transform_data.cpp -o transform_data.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ts_checks.cpp -o ts_checks.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ts_model_cpp.cpp -o ts_model_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wave_variance.cpp -o wave_variance.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wv_filters.cpp -o wv_filters.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o simts.so RcppExports.o additional_moments.o analytical_matrix_derivatives.o arima_gmwm.o armadillo_manipulations.o automatic_models.o bootstrappers.o complex_tools.o covariance_matrix.o dwt.o gen_process.o gmwm_logic.o guess_values.o idf_example.o inference.o lm.o model_selection.o obj_mod.o objective_functions.o polyroot.o process_to_wv.o read_imu.o robust_components.o rtoarmadillo.o rtruncated_normal.o sampler.o sarma.o summary_inf_mod.o transform_data.o ts_checks.o ts_model_cpp.o wave_variance.o wv_filters.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [simts.so] Error 1
-ERROR: compilation failed for package ‘simts’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/simts/new/simts.Rcheck/simts’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘simts’ ...
-** package ‘simts’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c additional_moments.cpp -o additional_moments.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c analytical_matrix_derivatives.cpp -o analytical_matrix_derivatives.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c arima_gmwm.cpp -o arima_gmwm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c armadillo_manipulations.cpp -o armadillo_manipulations.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c automatic_models.cpp -o automatic_models.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrappers.cpp -o bootstrappers.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c complex_tools.cpp -o complex_tools.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c covariance_matrix.cpp -o covariance_matrix.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dwt.cpp -o dwt.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gen_process.cpp -o gen_process.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gmwm_logic.cpp -o gmwm_logic.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c guess_values.cpp -o guess_values.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c idf_example.cpp -o idf_example.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c inference.cpp -o inference.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c lm.cpp -o lm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c model_selection.cpp -o model_selection.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c obj_mod.cpp -o obj_mod.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c objective_functions.cpp -o objective_functions.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c polyroot.cpp -o polyroot.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c process_to_wv.cpp -o process_to_wv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c read_imu.cpp -o read_imu.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c robust_components.cpp -o robust_components.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rtoarmadillo.cpp -o rtoarmadillo.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rtruncated_normal.cpp -o rtruncated_normal.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sampler.cpp -o sampler.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sarma.cpp -o sarma.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c summary_inf_mod.cpp -o summary_inf_mod.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c transform_data.cpp -o transform_data.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ts_checks.cpp -o ts_checks.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ts_model_cpp.cpp -o ts_model_cpp.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wave_variance.cpp -o wave_variance.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wv_filters.cpp -o wv_filters.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o simts.so RcppExports.o additional_moments.o analytical_matrix_derivatives.o arima_gmwm.o armadillo_manipulations.o automatic_models.o bootstrappers.o complex_tools.o covariance_matrix.o dwt.o gen_process.o gmwm_logic.o guess_values.o idf_example.o inference.o lm.o model_selection.o obj_mod.o objective_functions.o polyroot.o process_to_wv.o read_imu.o robust_components.o rtoarmadillo.o rtruncated_normal.o sampler.o sarma.o summary_inf_mod.o transform_data.o ts_checks.o ts_model_cpp.o wave_variance.o wv_filters.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [simts.so] Error 1
-ERROR: compilation failed for package ‘simts’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/simts/old/simts.Rcheck/simts’
-
-```
-# SpaCCr
-
-
-
-* Version: 0.1.0
-* Source code: https://github.com/cran/SpaCCr
-* Date/Publication: 2016-11-23 09:38:35
-* Number of recursive dependencies: 55
-
-Run `revdep_details(,"SpaCCr")` for more info
-
-
-
-## In both
-
-* checking whether package ‘SpaCCr’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SpaCCr/new/SpaCCr.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SpaCCr’ ...
-** package ‘SpaCCr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c SpaCC.cpp -o SpaCC.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SpaCCr.so RcppExports.o SpaCC.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [SpaCCr.so] Error 1
-ERROR: compilation failed for package ‘SpaCCr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SpaCCr/new/SpaCCr.Rcheck/SpaCCr’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SpaCCr’ ...
-** package ‘SpaCCr’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c SpaCC.cpp -o SpaCC.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SpaCCr.so RcppExports.o SpaCC.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [SpaCCr.so] Error 1
-ERROR: compilation failed for package ‘SpaCCr’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SpaCCr/old/SpaCCr.Rcheck/SpaCCr’
-
-```
-# stcos
-
-
-
-* Version: 0.2.1
-* Source code: https://github.com/cran/stcos
-* URL: https://github.com/holans/ST-COS
-* Date/Publication: 2019-12-06 06:10:02 UTC
-* Number of recursive dependencies: 33
-
-Run `revdep_details(,"stcos")` for more info
-
-
-
-## In both
-
-* checking whether package ‘stcos’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/stcos/new/stcos.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘stcos’ ...
-** package ‘stcos’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bisquare_basis.cpp -o bisquare_basis.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c eig.cpp -o eig.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pinv.cpp -o pinv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sample_Gamma0_VAR1.cpp -o sample_Gamma0_VAR1.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c seq_int.cpp -o seq_int.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o stcos.so RcppExports.o bisquare_basis.o eig.o pinv.o sample_Gamma0_VAR1.o seq_int.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [stcos.so] Error 1
-ERROR: compilation failed for package ‘stcos’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/stcos/new/stcos.Rcheck/stcos’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘stcos’ ...
-** package ‘stcos’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bisquare_basis.cpp -o bisquare_basis.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c eig.cpp -o eig.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pinv.cpp -o pinv.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sample_Gamma0_VAR1.cpp -o sample_Gamma0_VAR1.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c seq_int.cpp -o seq_int.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o stcos.so RcppExports.o bisquare_basis.o eig.o pinv.o sample_Gamma0_VAR1.o seq_int.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [stcos.so] Error 1
-ERROR: compilation failed for package ‘stcos’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/stcos/old/stcos.Rcheck/stcos’
-
-```
-# TCGAbiolinks
-
-
-
-* Version: 2.16.0
-* Source code: https://github.com/cran/TCGAbiolinks
-* URL: https://github.com/BioinformaticsFMRP/TCGAbiolinks
-* BugReports: https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues
-* Date/Publication: 2020-05-06
-* Number of recursive dependencies: 293
-
-Run `revdep_details(,"TCGAbiolinks")` for more info
-
-
-
-## In both
-
-* checking whether package ‘TCGAbiolinks’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinks/new/TCGAbiolinks.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘TCGAbiolinks’ ...
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘DESeq’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘TCGAbiolinks’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinks/new/TCGAbiolinks.Rcheck/TCGAbiolinks’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘TCGAbiolinks’ ...
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called ‘DESeq’
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘TCGAbiolinks’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinks/old/TCGAbiolinks.Rcheck/TCGAbiolinks’
-
-```
-# TCGAbiolinksGUI
-
-
-
-* Version: 1.14.0
-* Source code: https://github.com/cran/TCGAbiolinksGUI
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 325
-
-Run `revdep_details(,"TCGAbiolinksGUI")` for more info
-
-
-
-## In both
-
-* checking whether package ‘TCGAbiolinksGUI’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinksGUI/new/TCGAbiolinksGUI.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘TCGAbiolinksGUI’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called 'DESeq'
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘TCGAbiolinksGUI’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinksGUI/new/TCGAbiolinksGUI.Rcheck/TCGAbiolinksGUI’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘TCGAbiolinksGUI’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
- there is no package called 'DESeq'
-Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
-Execution halted
-ERROR: lazy loading failed for package ‘TCGAbiolinksGUI’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinksGUI/old/TCGAbiolinksGUI.Rcheck/TCGAbiolinksGUI’
-
-```
-# telefit
-
-
-
-* Version: 1.0.3
-* Source code: https://github.com/cran/telefit
-* Date/Publication: 2020-02-03 21:00:02 UTC
-* Number of recursive dependencies: 78
-
-Run `revdep_details(,"telefit")` for more info
-
-
-
-## In both
-
-* checking whether package ‘telefit’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/telefit/new/telefit.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘telefit’ ...
-** package ‘telefit’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c GibbsSampler.cpp -o GibbsSampler.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RWSampler.cpp -o RWSampler.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c covs.cpp -o covs.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c distributions.cpp -o distributions.o
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c glm_gmrf.cpp -o glm_gmrf.o
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c mcstat.cpp -o mcstat.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c numAlg.cpp -o numAlg.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpglmmod.cpp -o stpglmmod.o
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpmod.cpp -o stpmod.o
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-stpmod.cpp:470:32: warning: private field 'R' is not used [-Wunused-private-field]
- double CProposed_logdet, one, R;
- ^
-18 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpnotation.cpp -o stpnotation.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c svcMod.cpp -o svcMod.o
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c svcPredict.cpp -o svcPredict.o
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c transformations.cpp -o transformations.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o telefit.so GibbsSampler.o RWSampler.o RcppExports.o covs.o distributions.o glm_gmrf.o mcstat.o numAlg.o stpglmmod.o stpmod.o stpnotation.o svcMod.o svcPredict.o transformations.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [telefit.so] Error 1
-ERROR: compilation failed for package ‘telefit’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/telefit/new/telefit.Rcheck/telefit’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘telefit’ ...
-** package ‘telefit’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c GibbsSampler.cpp -o GibbsSampler.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RWSampler.cpp -o RWSampler.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c covs.cpp -o covs.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c distributions.cpp -o distributions.o
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from distributions.cpp:1:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c glm_gmrf.cpp -o glm_gmrf.o
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from glm_gmrf.cpp:1:
-In file included from ./glm_gmrf.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c mcstat.cpp -o mcstat.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c numAlg.cpp -o numAlg.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpglmmod.cpp -o stpglmmod.o
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpglmmod.cpp:9:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpmod.cpp -o stpmod.o
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from stpmod.cpp:4:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-stpmod.cpp:470:32: warning: private field 'R' is not used [-Wunused-private-field]
- double CProposed_logdet, one, R;
- ^
-18 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpnotation.cpp -o stpnotation.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c svcMod.cpp -o svcMod.o
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcMod.cpp:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c svcPredict.cpp -o svcPredict.o
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from svcPredict.cpp:9:
-In file included from ./distributions.h:8:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c transformations.cpp -o transformations.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o telefit.so GibbsSampler.o RWSampler.o RcppExports.o covs.o distributions.o glm_gmrf.o mcstat.o numAlg.o stpglmmod.o stpmod.o stpnotation.o svcMod.o svcPredict.o transformations.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [telefit.so] Error 1
-ERROR: compilation failed for package ‘telefit’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/telefit/old/telefit.Rcheck/telefit’
-
-```
-# TestDimorph
-
-
-
-* Version: 0.3.1
-* Source code: https://github.com/cran/TestDimorph
-* URL: https://github.com/bassam-abulnoor/TestDimorph
-* BugReports: https://github.com/bassam-abulnoor/TestDimorph/issues
-* Date/Publication: 2020-04-23 12:40:02 UTC
-* Number of recursive dependencies: 185
-
-Run `revdep_details(,"TestDimorph")` for more info
-
-
-
-## In both
-
-* checking whether package ‘TestDimorph’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TestDimorph/new/TestDimorph.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘TestDimorph’ ...
-** package ‘TestDimorph’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so
- Reason: image not found
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘TestDimorph’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TestDimorph/new/TestDimorph.Rcheck/TestDimorph’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘TestDimorph’ ...
-** package ‘TestDimorph’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so':
- dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib
- Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so
- Reason: image not found
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
-Execution halted
-ERROR: lazy loading failed for package ‘TestDimorph’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TestDimorph/old/TestDimorph.Rcheck/TestDimorph’
-
-```
-# tidybulk
-
-
-
-* Version:
-* Source code: ???
-* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr
-* BugReports: https://github.com/tidyverse/dplyr/issues
-* Number of recursive dependencies: 0
-
-Run `revdep_details(,"")` for more info
-
-
-
-## Error before installation
-
-### Devel
-
-```
-
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-GO.db 3.11.1 3.11.4 FALSE
-httpuv 1.5.2 1.5.3.1 TRUE
-nlme 3.1-147 3.1-148 TRUE
-org.Hs.eg.db 3.11.1 3.11.4 FALSE
-org.Rn.eg.db 3.11.1 3.11.4 FALSE
-reticulate 1.15 1.16 TRUE
-
- Binaries will be installed
-
-
-installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘org.Rn.eg.db’
-
-
-
-```
-### CRAN
-
-```
-
- There are binary versions available but the source versions are later:
- binary source needs_compilation
-GO.db 3.11.1 3.11.4 FALSE
-httpuv 1.5.2 1.5.3.1 TRUE
-nlme 3.1-147 3.1-148 TRUE
-org.Hs.eg.db 3.11.1 3.11.4 FALSE
-org.Rn.eg.db 3.11.1 3.11.4 FALSE
-reticulate 1.15 1.16 TRUE
-
- Binaries will be installed
-
-
-installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘org.Rn.eg.db’
-
-
-
-```
-# ToxicoGx
-
-
-
-* Version: 0.1.1
-* Source code: https://github.com/cran/ToxicoGx
-* Date/Publication: 2020-01-20 17:00:24 UTC
-* Number of recursive dependencies: 163
-
-Run `revdep_details(,"ToxicoGx")` for more info
-
-
-
-## In both
-
-* checking whether package ‘ToxicoGx’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ToxicoGx/new/ToxicoGx.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘ToxicoGx’ ...
-** package ‘ToxicoGx’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘cSetName’ is not exported by 'namespace:CoreGx'
-Execution halted
-ERROR: lazy loading failed for package ‘ToxicoGx’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ToxicoGx/new/ToxicoGx.Rcheck/ToxicoGx’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘ToxicoGx’ ...
-** package ‘ToxicoGx’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘cSetName’ is not exported by 'namespace:CoreGx'
-Execution halted
-ERROR: lazy loading failed for package ‘ToxicoGx’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ToxicoGx/old/ToxicoGx.Rcheck/ToxicoGx’
-
-```
-# VarSelLCM
-
-
-
-* Version: 2.1.3
-* Source code: https://github.com/cran/VarSelLCM
-* URL: http://varsellcm.r-forge.r-project.org/
-* Date/Publication: 2018-08-29 10:24:28 UTC
-* Number of recursive dependencies: 73
-
-Run `revdep_details(,"VarSelLCM")` for more info
-
-
-
-## In both
-
-* checking whether package ‘VarSelLCM’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/VarSelLCM/new/VarSelLCM.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘VarSelLCM’ ...
-** package ‘VarSelLCM’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Algorithm.cpp -o Algorithm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmCategorical.cpp -o AlgorithmCategorical.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmContinuous.cpp -o AlgorithmContinuous.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmInteger.cpp -o AlgorithmInteger.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmMixed.cpp -o AlgorithmMixed.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataCategorical.cpp -o DataCategorical.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataContinuous.cpp -o DataContinuous.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataInteger.cpp -o DataInteger.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataMixed.cpp -o DataMixed.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamCategorical.cpp -o ParamCategorical.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamContinuous.cpp -o ParamContinuous.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamInteger.cpp -o ParamInteger.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamMixed.cpp -o ParamMixed.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c VarSelLCMmixte.cpp -o VarSelLCMmixte.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEM.cpp -o XEM.o
-XEM.cpp:63:14: warning: unused variable 'indicebest' [-Wunused-variable]
- double indicebest = (loglikeSmall).max(index);
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMCategorical.cpp -o XEMCategorical.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMContinuous.cpp -o XEMContinuous.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMInteger.cpp -o XEMInteger.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMMixed.cpp -o XEMMixed.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMPen.cpp -o XEMPen.o
-XEMPen.cpp:176:10: warning: unused variable 'repere' [-Wunused-variable]
- int repere=0;
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VarSelLCM.so Algorithm.o AlgorithmCategorical.o AlgorithmContinuous.o AlgorithmInteger.o AlgorithmMixed.o DataCategorical.o DataContinuous.o DataInteger.o DataMixed.o ParamCategorical.o ParamContinuous.o ParamInteger.o ParamMixed.o RcppExports.o VarSelLCMmixte.o XEM.o XEMCategorical.o XEMContinuous.o XEMInteger.o XEMMixed.o XEMPen.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [VarSelLCM.so] Error 1
-ERROR: compilation failed for package ‘VarSelLCM’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/VarSelLCM/new/VarSelLCM.Rcheck/VarSelLCM’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘VarSelLCM’ ...
-** package ‘VarSelLCM’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Algorithm.cpp -o Algorithm.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmCategorical.cpp -o AlgorithmCategorical.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmContinuous.cpp -o AlgorithmContinuous.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmInteger.cpp -o AlgorithmInteger.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmMixed.cpp -o AlgorithmMixed.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataCategorical.cpp -o DataCategorical.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataContinuous.cpp -o DataContinuous.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataInteger.cpp -o DataInteger.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataMixed.cpp -o DataMixed.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamCategorical.cpp -o ParamCategorical.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamContinuous.cpp -o ParamContinuous.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamInteger.cpp -o ParamInteger.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamMixed.cpp -o ParamMixed.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c VarSelLCMmixte.cpp -o VarSelLCMmixte.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEM.cpp -o XEM.o
-XEM.cpp:63:14: warning: unused variable 'indicebest' [-Wunused-variable]
- double indicebest = (loglikeSmall).max(index);
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMCategorical.cpp -o XEMCategorical.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMContinuous.cpp -o XEMContinuous.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMInteger.cpp -o XEMInteger.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMMixed.cpp -o XEMMixed.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMPen.cpp -o XEMPen.o
-XEMPen.cpp:176:10: warning: unused variable 'repere' [-Wunused-variable]
- int repere=0;
- ^
-1 warning generated.
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VarSelLCM.so Algorithm.o AlgorithmCategorical.o AlgorithmContinuous.o AlgorithmInteger.o AlgorithmMixed.o DataCategorical.o DataContinuous.o DataInteger.o DataMixed.o ParamCategorical.o ParamContinuous.o ParamInteger.o ParamMixed.o RcppExports.o VarSelLCMmixte.o XEM.o XEMCategorical.o XEMContinuous.o XEMInteger.o XEMMixed.o XEMPen.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [VarSelLCM.so] Error 1
-ERROR: compilation failed for package ‘VarSelLCM’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/VarSelLCM/old/VarSelLCM.Rcheck/VarSelLCM’
-
-```
-# vlad
-
-
-
-* Version: 0.2.0
-* Source code: https://github.com/cran/vlad
-* BugReports: https://github.com/wittenberg/vlad/issues
-* Date/Publication: 2018-12-06 08:50:03 UTC
-* Number of recursive dependencies: 67
-
-Run `revdep_details(,"vlad")` for more info
-
-
-
-## In both
-
-* checking whether package ‘vlad’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/vlad/new/vlad.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘vlad’ ...
-** package ‘vlad’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c eocusum_sim.cpp -o eocusum_sim.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c racusum_mc.cpp -o racusum_mc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c racusum_sim.cpp -o racusum_sim.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o vlad.so RcppExports.o eocusum_sim.o racusum_mc.o racusum_sim.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [vlad.so] Error 1
-ERROR: compilation failed for package ‘vlad’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/vlad/new/vlad.Rcheck/vlad’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘vlad’ ...
-** package ‘vlad’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c eocusum_sim.cpp -o eocusum_sim.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c racusum_mc.cpp -o racusum_mc.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c racusum_sim.cpp -o racusum_sim.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o vlad.so RcppExports.o eocusum_sim.o racusum_mc.o racusum_sim.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [vlad.so] Error 1
-ERROR: compilation failed for package ‘vlad’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/vlad/old/vlad.Rcheck/vlad’
-
-```
-# walker
-
-
-
-* Version: 0.3.1-1
-* Source code: https://github.com/cran/walker
-* URL: https://github.com/helske/walker
-* BugReports: https://github.com/helske/walker/issues
-* Date/Publication: 2020-01-23 15:50:02 UTC
-* Number of recursive dependencies: 96
-
-Run `revdep_details(,"walker")` for more info
-
-
-
-## In both
-
-* checking whether package ‘walker’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/walker/new/walker.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘walker’ ...
-** package ‘walker’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-
-
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Modules.cpp -o Modules.o
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core.hpp:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function]
-static void set_zero_all_adjoints() {
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core.hpp:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp:17:13: warning: 'static' function 'set_zero_all_adjoints_nested' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
-static void set_zero_all_adjoints_nested() {
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat.hpp:336:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp:5:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp:64:59: warning: unused typedef 'T_alpha_val' [-Wunused-local-typedef]
- typename partials_return_type::type>::type T_alpha_val;
- ^
-In file included from Modules.cpp:3:
-./include/models.hpp:560:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
- typedef double local_scalar_t__;
- ^
-./include/models.hpp:1384:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
- typedef double local_scalar_t__;
- ^
-./include/models.hpp:2539:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
- typedef double local_scalar_t__;
- ^
-./include/models.hpp:4561:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
- typedef double local_scalar_t__;
- ^
-./include/models.hpp:7010:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
- typedef double local_scalar_t__;
- ^
-25 warnings generated.
-
-
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-
-
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c predict.cpp -o predict.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o walker.so Modules.o RcppExports.o predict.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [walker.so] Error 1
-ERROR: compilation failed for package ‘walker’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/walker/new/walker.Rcheck/walker’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘walker’ ...
-** package ‘walker’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-
-
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Modules.cpp -o Modules.o
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core.hpp:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function]
-static void set_zero_all_adjoints() {
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core.hpp:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp:17:13: warning: 'static' function 'set_zero_all_adjoints_nested' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration]
-static void set_zero_all_adjoints_nested() {
- ^
-In file included from Modules.cpp:3:
-In file included from ./include/models.hpp:18:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat.hpp:336:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp:5:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp:64:59: warning: unused typedef 'T_alpha_val' [-Wunused-local-typedef]
- typename partials_return_type::type>::type T_alpha_val;
- ^
-In file included from Modules.cpp:3:
-./include/models.hpp:560:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
- typedef double local_scalar_t__;
- ^
-./include/models.hpp:1384:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
- typedef double local_scalar_t__;
- ^
-./include/models.hpp:2539:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
- typedef double local_scalar_t__;
- ^
-./include/models.hpp:4561:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
- typedef double local_scalar_t__;
- ^
-./include/models.hpp:7010:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef]
- typedef double local_scalar_t__;
- ^
-25 warnings generated.
-
-
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:1:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Core:535:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:2:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/LU:47:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:12:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Jacobi:29:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:4:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/QR:17:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Householder:27:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SVD:48:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:6:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Geometry:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:7:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Eigenvalues:58:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:26:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCore:66:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:27:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/OrderingMethods:71:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:29:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCholesky:43:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseQR:35:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:33:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/IterativeLinearSolvers:46:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:32:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/CholmodSupport:45:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:35:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:39:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/Polynomials:135:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-In file included from RcppExports.cpp:5:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:40:
-In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/SparseExtra:51:
-/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas]
- #pragma clang diagnostic pop
- ^
-17 warnings generated.
-
-
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c predict.cpp -o predict.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o walker.so Modules.o RcppExports.o predict.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [walker.so] Error 1
-ERROR: compilation failed for package ‘walker’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/walker/old/walker.Rcheck/walker’
-
-```
-# weibulltools
-
-
-
-* Version: 1.0.1
-* Source code: https://github.com/cran/weibulltools
-* Date/Publication: 2019-01-29 16:10:03 UTC
-* Number of recursive dependencies: 110
-
-Run `revdep_details(,"weibulltools")` for more info
-
-
-
-## In both
-
-* checking whether package ‘weibulltools’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/weibulltools/new/weibulltools.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘weibulltools’ ...
-** package ‘weibulltools’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c em_mixture.cpp -o em_mixture.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c johnson_ranks.cpp -o johnson_ranks.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o weibulltools.so RcppExports.o em_mixture.o johnson_ranks.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [weibulltools.so] Error 1
-ERROR: compilation failed for package ‘weibulltools’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/weibulltools/new/weibulltools.Rcheck/weibulltools’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘weibulltools’ ...
-** package ‘weibulltools’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c em_mixture.cpp -o em_mixture.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c johnson_ranks.cpp -o johnson_ranks.o
-clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o weibulltools.so RcppExports.o em_mixture.o johnson_ranks.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
-ld: warning: directory not found for option '-L/usr/local/gfortran/lib'
-ld: library not found for -lgfortran
-clang: error: linker command failed with exit code 1 (use -v to see invocation)
-make: *** [weibulltools.so] Error 1
-ERROR: compilation failed for package ‘weibulltools’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/weibulltools/old/weibulltools.Rcheck/weibulltools’
-
-```
-# XBSeq
-
-
-
-* Version: 1.20.0
-* Source code: https://github.com/cran/XBSeq
-* URL: https://github.com/Liuy12/XBSeq
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 111
-
-Run `revdep_details(,"XBSeq")` for more info
-
-
-
-## In both
-
-* R CMD check timed out
-
-
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘DESeq’
- ```
-
-* checking whether the namespace can be loaded with stated dependencies ... NOTE
- ```
- Warning: no function found corresponding to methods exports from ‘XBSeq’ for: ‘conditions’, ‘conditions<-’, ‘dispTable’
-
- A namespace must be able to be loaded with just the base namespace
- loaded: otherwise if the namespace gets loaded by a saved object, the
- session will be unable to start.
-
- Probably some imports need to be declared in the NAMESPACE file.
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- ...
- estimateRealCount,XBSeqDataSet: no visible global function definition
- for ‘assay’
- estimateRealCount,XBSeqDataSet: no visible global function definition
- for ‘assay<-’
- estimateSCV,XBSeqDataSet: no visible global function definition for
- ‘conditions’
- estimateSCV,XBSeqDataSet: no visible global function definition for
- ‘dispTable<-’
- Undefined global functions or variables:
- ..count.. DataFrame Gamma Group Sample SummarizedExperiment assay
- assay<- assays baseMean coefficients complete.cases conditions cor
- data ddelap dispTable dispTable<- dnbinom dpois formula glm
- log2FoldChange median optim p.adjust pbeta predict qbeta quantile
- rnbinom scvBiasCorrectionFits
- Consider adding
- importFrom("stats", "Gamma", "coefficients", "complete.cases", "cor",
- "dnbinom", "dpois", "formula", "glm", "median", "optim",
- "p.adjust", "pbeta", "predict", "qbeta", "quantile",
- "rnbinom")
- importFrom("utils", "data")
- to your NAMESPACE file.
- ```
-
diff --git a/revdep/dplyr/problems.md b/revdep/dplyr/problems.md
index 55bb6a0696..5290c2d001 100644
--- a/revdep/dplyr/problems.md
+++ b/revdep/dplyr/problems.md
@@ -1,66 +1,3 @@
-# AlphaBeta
-
-
-
-* Version: 1.2.0
-* Source code: https://github.com/cran/AlphaBeta
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 89
-
-Run `revdep_details(,"AlphaBeta")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- ...
- Running examples in ‘AlphaBeta-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: buildPedigree
- > ### Title: Building Pedigree
- > ### Aliases: buildPedigree
- >
- > ### ** Examples
- >
- > # Get some toy data
- > file <- system.file("extdata/dm/","nodelist.fn", package="AlphaBeta")
- > df<-read.csv(file)
- > df$filename <- gsub("^", paste0(dirname(dirname(file)),"/"), df$filename )
- > write.csv(df, file = paste0(dirname(file),"/", "tmp_nodelist.fn"), row.names=FALSE, quote=FALSE)
- > file <- system.file("extdata/dm/","tmp_nodelist.fn", package="AlphaBeta")
- > file2 <- system.file("extdata/dm/","edgelist.fn", package="AlphaBeta")
- > buildPedigree(nodelist = file, edgelist=file2, cytosine="CG", posteriorMaxFilter=0.99)
- constracting pedigree ...
- Error in .subset2(x, i, exact = exact) : subscript out of bounds
- Calls: buildPedigree ... cat -> paste0 -> [[ -> [[.data.frame ->
- Execution halted
- ```
-
-## In both
-
-* checking top-level files ... NOTE
- ```
- File
- LICENSE
- is not mentioned in the DESCRIPTION file.
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- ABplot: no visible binding for global variable ‘delta.t’
- ABplot: no visible binding for global variable ‘div.obs’
- BOOTmodel: multiple local function definitions for ‘divergence’ with
- different formal arguments
- plotPedigree: no visible binding for global variable ‘meth’
- plotPedigree: no visible binding for global variable ‘V1’
- plotPedigree: no visible binding for global variable ‘V2’
- Undefined global functions or variables:
- V1 V2 delta.t div.obs meth
- ```
-
# amt
@@ -71,15 +8,15 @@ Run `revdep_details(,"AlphaBeta")` for more info
* Date/Publication: 2020-04-28 12:10:02 UTC
* Number of recursive dependencies: 167
-Run `revdep_details(,"amt")` for more info
+Run `cloud_details(, "amt")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘tinytest.R’
Running the tests in ‘tests/tinytest.R’ failed.
Last 13 lines of output:
Running test_track.R.................. 56 tests [0;32mOK[0m
@@ -99,50 +36,147 @@ Run `revdep_details(,"amt")` for more info
Execution halted
```
-# BMSC
+# anomalize
* Version: 0.2.0
-* Source code: https://github.com/cran/BMSC
-* Date/Publication: 2019-04-16 15:25:42 UTC
-* Number of recursive dependencies: 85
+* Source code: https://github.com/cran/anomalize
+* URL: https://github.com/business-science/anomalize
+* BugReports: https://github.com/business-science/anomalize/issues
+* Date/Publication: 2019-09-21 04:10:03 UTC
+* Number of recursive dependencies: 162
-Run `revdep_details(,"BMSC")` for more info
+Run `cloud_details(, "anomalize")` for more info
## Newly broken
-* checking tests ...
+* checking examples ... ERROR
+ ```
+ ...
+
+ Attaching package: ‘dplyr’
+
+ The following objects are masked from ‘package:stats’:
+
+ filter, lag
+
+ The following objects are masked from ‘package:base’:
+
+ intersect, setdiff, setequal, union
+
+ >
+ > tidyverse_cran_downloads %>%
+ + ungroup() %>%
+ + filter(package == "tidyquant") %>%
+ + decompose_stl(count)
+ Error in time_frequency(data, period = frequency, message = message) :
+ Error time_frequency(): Cannot use on a grouped data frame.
+ Frequency should be performed on a single time series.
+ Calls: %>% ... withVisible -> -> decompose_stl -> time_frequency
+ Execution halted
+ ```
+
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
- ── 2. Error: predict inserts NA values at correct positions (not all variables i
- argument is of length zero
- Backtrace:
- 1. testthat::expect_true(...)
- 4. dplyr::all_equal(...)
- 5. dplyr:::equal_data_frame(...)
- 6. dplyr:::is_compatible_data_frame(...)
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 53 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 14 ]
+ 1. Error: returns a ggplot (@test-plot_anomalies.R#8)
+ 2. Error: returns a ggplot (@test-plot_anomaly_decomposition.R#10)
+ 3. Error: grouped_tbl_time works (@test-time_apply.R#11)
+ 4. Error: tbl_time works (@test-time_apply.R#17)
+ 5. Failure: single tbl_df (@test-time_decompose.R#20)
+ 6. Error: time_frequency works: period = 'auto' (@test-time_frequency.R#26)
+ 7. Error: time_frequency works: period = '1 month' (@test-time_frequency.R#35)
+ 8. Error: time_frequency works: period = 5 (@test-time_frequency.R#44)
+ 9. Error: time_trend works: period = 'auto' (@test-time_frequency.R#55)
+ 1. ...
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
+# applicable
+
+
+
+* Version: 0.0.1
+* Source code: https://github.com/cran/applicable
+* URL: https://github.com/tidymodels/applicable
+* Date/Publication: 2020-05-25 14:00:02 UTC
+* Number of recursive dependencies: 98
+
+Run `cloud_details(, "applicable")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘spelling.R’
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ `actual_output` not equivalent to `expected`.
+ current is not list-like
+
+ ── 3. Failure: `score_apd_pca_bridge` output is correct (@test-pca-score.R#84)
+ `actual_output` not equivalent to `expected`.
+ current is not list-like
══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 57 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 2 ]
- 1. Error: predict inserts NA values at correct positions (@test-predict.R#58)
- 2. Error: predict inserts NA values at correct positions (not all variables in model) (@test-predict.R#74)
+ [ OK: 106 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 3 ]
+ 1. Failure: `score_apd_pca_numeric` pcs output matches `stats::predict` output (@test-pca-score.R#48)
+ 2. Failure: `score` pcs output matches `stats::predict` output (@test-pca-score.R#66)
+ 3. Failure: `score_apd_pca_bridge` output is correct (@test-pca-score.R#84)
Error: testthat unit tests failed
Execution halted
```
-## In both
+# bdl
-* checking installed package size ... NOTE
+
+
+* Version: 1.0.2
+* Source code: https://github.com/cran/bdl
+* URL: https://github.com/statisticspoland/R_Package_to_API_BDL
+* BugReports: https://github.com/statisticspoland/R_Package_to_API_BDL/issues
+* Date/Publication: 2020-04-01 13:40:03 UTC
+* Number of recursive dependencies: 155
+
+Run `cloud_details(, "bdl")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
```
- installed size is 6.7Mb
- sub-directories of 1Mb or more:
- libs 6.2Mb
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ Component 4: Modes: numeric, character
+ Component 4: target is numeric, current is character
+ Component 5: Mean relative difference: 2.2
+ Component 6: Modes: character, numeric
+ ...
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 34 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 4 ]
+ 1. Failure: Proper data (@test-requests.R#72)
+ 2. Failure: Proper data (@test-requests.R#127)
+ 3. Failure: Proper data (@test-requests.R#179)
+ 4. Failure: Proper data (@test-requests.R#244)
+
+ Error: testthat unit tests failed
+ Execution halted
```
# cattonum
@@ -156,15 +190,15 @@ Run `revdep_details(,"BMSC")` for more info
* Date/Publication: 2020-02-09 12:30:06 UTC
* Number of recursive dependencies: 71
-Run `revdep_details(,"cattonum")` for more info
+Run `cloud_details(, "cattonum")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ testthat results ═══════════════════════════════════════════════════════════
@@ -184,18 +218,18 @@ Run `revdep_details(,"cattonum")` for more info
Execution halted
```
-# circRNAprofiler
+# codebook
-* Version: 1.2.0
-* Source code: https://github.com/cran/circRNAprofiler
-* URL: https://github.com/Aufiero/circRNAprofiler
-* BugReports: https://github.com/Aufiero/circRNAprofiler/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 214
+* Version: 0.8.2
+* Source code: https://github.com/cran/codebook
+* URL: https://github.com/rubenarslan/codebook
+* BugReports: https://github.com/rubenarslan/codebook/issues
+* Date/Publication: 2020-01-09 16:20:07 UTC
+* Number of recursive dependencies: 179
-Run `revdep_details(,"circRNAprofiler")` for more info
+Run `cloud_details(, "codebook")` for more info
@@ -204,57 +238,89 @@ Run `revdep_details(,"circRNAprofiler")` for more info
* checking examples ... ERROR
```
...
- + width = 6,
- + species = "Hsapiens",
- + rbp = TRUE,
- + reverse = FALSE)
- trying URL 'https://attract.cnic.es/attract/static/ATtRACT.zip'
- downloaded 113 KB
-
- motifs.txt is empty or absent. Only
- ATtRACT motifs will be analyzedError: Can't combine `..1$id` and `..2$id` .
+ >
+ > ### ** Examples
+ >
+ > # will generate figures in a temporary directory
+ > old_base_dir <- knitr::opts_knit$get("base.dir")
+ > knitr::opts_knit$set(base.dir = tempdir())
+ > on.exit(knitr::opts_knit$set(base.dir = old_base_dir))
+ > data("bfi")
+ > bfi <- bfi[, c("BFIK_open_1", "BFIK_open_1")]
+ > md <- codebook(bfi, survey_repetition = "single", metadata_table = FALSE)
+ No missing values.
+ Error: Argument 1 must be a data frame or a named atomic vector.
Backtrace:
█
- 1. ├─circRNAprofiler::getMotifs(...)
- 2. │ └─circRNAprofiler:::.filterMotifs(...)
- 3. │ └─circRNAprofiler:::.getUserAttractMotifs(species, reverse, pathToMotifs)
- 4. │ └─dplyr::bind_rows(newMotifsFromFile[, c(1, 2)], newAttractRBPmotifs)
- 5. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id)
- 6. └─vctrs::vec_default_ptype2(...)
- 7. └─vctrs::stop_incompatible_type(...)
- 8. └─vctrs:::stop_incompatible(...)
- 9. └─vctrs:::stop_vctrs(...)
+ 1. └─codebook::codebook(bfi, survey_repetition = "single", metadata_table = FALSE)
+ 2. └─codebook::metadata_jsonld(results)
+ 3. └─codebook::metadata_list(results)
+ 4. └─codebook::codebook_table(results)
+ 5. └─codebook:::skim_to_wide_labelled(results)
+ 6. └─dplyr::bind_rows(...)
Execution halted
```
## In both
-* checking tests ...
+* checking dependencies in R code ... NOTE
+ ```
+ Namespaces in Imports field not imported from:
+ ‘graphics’ ‘jsonlite’ ‘pander’
+ All declared Imports should be used.
+ ```
+
+* checking data for non-ASCII characters ... NOTE
+ ```
+ Note: found 65 marked UTF-8 strings
+ ```
+
+# collapse
+
+
+
+* Version: 1.2.1
+* Source code: https://github.com/cran/collapse
+* BugReports: https://github.com/SebKrantz/collapse/issues
+* Date/Publication: 2020-05-26 22:10:10 UTC
+* Number of recursive dependencies: 82
+
+Run `cloud_details(, "collapse")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
- 1. Error: annotateBSJs() generates the correct data structure (@test_annotateBSJs.R#10)
- 2. Error: annotateBSJs() generates a data frame with the correct content (@test_annotateBSJs.R#33)
- 3. Error: annotateBSJs() generates the correct data structure
- when using random back-spliced junctions (@test_annotateBSJs.R#80)
- 4. Error: annotateBSJs() generates a data frame with the correct content when using
- random back-spliced junctions (@test_annotateBSJs.R#102)
- 5. Error: annotateRepeats() generates the correct data structure (@test_annotateRepeats.R#8)
- 6. Error: filterCirc() filters the data frame containing circRNA counts (@test_filterBSJs.R#13)
- 7. Error: getBackSplicedJunctions() generates the correct data structure (@test_getBackSplicedJunctions.R#14)
- 8. Error: mergeBSJunctions() generates a data frame with the correct content (@test_getBackSplicedJunctions.R#43)
- 9. Error: getCircSeqs() generate the correct data structure (@test_getCircSeqs.R#9)
- 1. ...
-
- Error: testthat unit tests failed
- Execution halted
+ 34: withRestarts(testthat_abort_reporter = function() NULL, force(code))
+ 35: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, { reporter$start_file(basename(path)) lister$start_file(basename(path)) source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap) reporter$.end_context() reporter$end_file() })
+ 36: FUN(X[[i]], ...)
+ 37: lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
+ 38: force(code)
+ 39: doWithOneRestart(return(expr), restart)
+ 40: withOneRestart(expr, restarts[[1L]])
+ 41: withRestarts(testthat_abort_reporter = function() NULL, force(code))
+ 42: with_reporter(reporter = current_reporter, results <- lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap))
+ 43: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
+ 44: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
+ 45: test_package_dir(package = package, test_path = test_path, filter = filter, reporter = reporter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap)
+ 46: test_check("collapse")
+ An irrecoverable exception occurred. R is aborting now ...
+ Segmentation fault
```
-* checking package dependencies ... NOTE
+## In both
+
+* checking installed package size ... NOTE
```
- Packages suggested but not available for checking:
- 'BSgenome.Mmusculus.UCSC.mm9', 'BSgenome.Mmusculus.UCSC.mm10'
+ installed size is 5.6Mb
+ sub-directories of 1Mb or more:
+ doc 1.9Mb
+ libs 2.1Mb
```
# CollapseLevels
@@ -266,7 +332,7 @@ Run `revdep_details(,"circRNAprofiler")` for more info
* Date/Publication: 2017-12-04 10:30:12 UTC
* Number of recursive dependencies: 65
-Run `revdep_details(,"CollapseLevels")` for more info
+Run `cloud_details(, "CollapseLevels")` for more info
@@ -298,174 +364,123 @@ Run `revdep_details(,"CollapseLevels")` for more info
Execution halted
```
-# cvms
+# correlationfunnel
-* Version: 1.0.1
-* Source code: https://github.com/cran/cvms
-* URL: https://github.com/ludvigolsen/cvms
-* BugReports: https://github.com/ludvigolsen/cvms/issues
-* Date/Publication: 2020-04-19 09:30:02 UTC
-* Number of recursive dependencies: 120
+* Version: 0.1.0
+* Source code: https://github.com/cran/correlationfunnel
+* URL: https://github.com/business-science/correlationfunnel
+* BugReports: https://github.com/business-science/correlationfunnel/issues
+* Date/Publication: 2019-08-06 09:30:09 UTC
+* Number of recursive dependencies: 97
-Run `revdep_details(,"cvms")` for more info
+Run `cloud_details(, "correlationfunnel")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
+
+ ── 4. Failure: Check correlation (@test-correlate.R#61) ───────────────────────
+ nrow(marketing_correlated_tbl) not equal to 74.
+ 1/1 mismatches
+ [1] 65 - 74 == -9
+
══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 3757 | SKIPPED: 61 | WARNINGS: 5 | FAILED: 12 ]
- 1. Failure: the grid order is as expected with create_computation_grid() (@test_compational_grid.R#260)
- 2. Failure: multinomial evaluations with one predicted class column is correctly unpacked in evaluate() (@test_evaluate.R#1361)
- 3. Failure: multinomial evaluations with one predicted class column is correctly unpacked in evaluate() (@test_evaluate.R#1369)
- 4. Failure: multinomial evaluations with one predicted class column is correctly unpacked in evaluate() (@test_evaluate.R#1377)
- 5. Failure: multinomial evaluations with one predicted class column is correctly unpacked in evaluate() (@test_evaluate.R#1385)
- 6. Failure: multinomial evaluations with one predicted class column is correctly unpacked in evaluate() (@test_evaluate.R#1393)
- 7. Failure: evaluate() and confusion_matrix() has same metric values (@test_evaluate.R#4015)
- 8. Failure: evaluate() and confusion_matrix() has same metric values (@test_evaluate.R#4054)
- 9. Failure: evaluate() and evaluate_residuals() has same metric values (@test_evaluate.R#4104)
- 1. ...
+ [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 4 ]
+ 1. Error: Check binarize - numeric (@test-binarize.R#47)
+ 2. Error: Check binarize - numeric (@test-binarize.R#45)
+ 3. Error: (unknown) (@test-binarize.R#45)
+ 4. Failure: Check correlation (@test-correlate.R#61)
Error: testthat unit tests failed
Execution halted
```
-# ddpcr
-
-
-
-* Version: 1.14
-* Source code: https://github.com/cran/ddpcr
-* URL: https://github.com/daattali/ddpcr
-* BugReports: https://github.com/daattali/ddpcr/issues
-* Date/Publication: 2020-03-23 18:00:06 UTC
-* Number of recursive dependencies: 88
-
-Run `revdep_details(,"ddpcr")` for more info
-
-
+## In both
-## Newly broken
+* checking installed package size ... NOTE
+ ```
+ installed size is 5.4Mb
+ sub-directories of 1Mb or more:
+ doc 3.0Mb
+ help 1.6Mb
+ ```
-* checking whether package ‘ddpcr’ can be installed ... WARNING
+* checking dependencies in R code ... NOTE
```
- Found the following significant warnings:
- Warning: `mutate_()` is deprecated as of dplyr 0.7.0.
- Warning: `select_()` is deprecated as of dplyr 0.7.0.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ddpcr/new/ddpcr.Rcheck/00install.out’ for details.
+ Namespace in Imports field not imported from: ‘utils’
+ All declared Imports should be used.
```
-# DEGreport
+# cutpointr
-* Version: 1.24.0
-* Source code: https://github.com/cran/DEGreport
-* URL: http://lpantano.github.io/DEGreport/
-* BugReports: https://github.com/lpantano/DEGreport/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 132
+* Version: 1.0.2
+* Source code: https://github.com/cran/cutpointr
+* URL: https://github.com/thie1e/cutpointr
+* BugReports: https://github.com/thie1e/cutpointr/issues
+* Date/Publication: 2020-04-14 08:50:10 UTC
+* Number of recursive dependencies: 78
-Run `revdep_details(,"DEGreport")` for more info
+Run `cloud_details(, "cutpointr")` for more info
## Newly broken
-* checking examples ... ERROR
- ```
- ...
- Error: Problem with `summarise()` input `n_genes`.
- ✖ could not find function "n"
- ℹ Input `n_genes` is `n()`.
- ℹ The error occured in group 1: merge = "aFemale", cluster = 1, group = "Female", other = "a".
- Backtrace:
- █
- 1. └─DEGreport::degPatterns(ma, des, time = "group", col = "other")
- 2. └─`%>%`(...)
- 3. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
- 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 6. └─DEGreport:::`_fseq`(`_lhs`)
- 7. └─magrittr::freduce(value, `_function_list`)
- 8. └─function_list[[i]](value)
- 9. ├─dplyr::summarise(., abundance = median(value), n_genes = n())
- 10. └─dplyr:::summarise.grouped_df(., abundance = median(value), n_genes = n())
- 11. └─dplyr:::summarise_cols(.data, ...)
-
- Backtrace:
- █
- Execution halted
- ```
-
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
- ✖ could not find function "n"
- ℹ Input `n_genes` is `n()`.
- ℹ The error occured in group 1: merge = "aFemale", cluster = 1, group = "Female", other = "a".
- Backtrace:
- 1. DEGreport::degPatterns(...)
- 2. dplyr::group_by(...)
- 9. dplyr::summarise(., abundance = median(value), n_genes = n())
- 11. dplyr:::summarise_cols(.data, ...)
+ names for target but not for current
+
+ ── 4. Failure: boot_test works correctly (@test-cutpointr.R#1428) ─────────────
+ round(bt$p_adj, 3) not equal to c(1, 0.647, 0.731).
+ names for target but not for current
══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 50 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 1 ]
- 1. Error: (unknown) (@test_cluster.R#13)
+ [ OK: 499 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 4 ]
+ 1. Failure: boot_ci works correctly (@test-cutpointr.R#1394)
+ 2. Failure: boot_test works correctly (@test-cutpointr.R#1425)
+ 3. Failure: boot_test works correctly (@test-cutpointr.R#1426)
+ 4. Failure: boot_test works correctly (@test-cutpointr.R#1428)
Error: testthat unit tests failed
Execution halted
```
-## In both
+# ddpcr
-* checking for hidden files and directories ... NOTE
- ```
- Found the following hidden files and directories:
- .travis.yml
- These were most likely included in error. See section ‘Package
- structure’ in the ‘Writing R Extensions’ manual.
- ```
+
-* checking R code for possible problems ... NOTE
- ```
- ...
- degMV: no visible binding for global variable ‘max_sd’
- degPatterns: no visible global function definition for ‘rowMedians’
- degPatterns: no visible binding for global variable ‘genes’
- degPatterns: no visible global function definition for ‘n’
- degPlotCluster: no visible binding for global variable ‘genes’
- degPlotCluster: no visible binding for global variable ‘cluster’
- degPlotWide : : no visible binding for global variable
- ‘count’
- significants,TopTags: no visible binding for global variable ‘FDR’
- significants,TopTags: no visible binding for global variable ‘logFC’
- significants,list : : no visible binding for global variable
- ‘gene’
- Undefined global functions or variables:
- .x FDR base_mean boxplot cluster comp compare count counts covar
- cutoff desc enrichGO fdr fdrtool gene genes itemConsensus k keys lm
- log2FoldChange log2fc logFC max_sd min_median n p.value r ratios
- rowMedians score simplify value_fc value_fdr x xend y yend
- Consider adding
- importFrom("graphics", "boxplot")
- importFrom("stats", "lm")
- to your NAMESPACE file.
- ```
+* Version: 1.14
+* Source code: https://github.com/cran/ddpcr
+* URL: https://github.com/daattali/ddpcr
+* BugReports: https://github.com/daattali/ddpcr/issues
+* Date/Publication: 2020-03-23 18:00:06 UTC
+* Number of recursive dependencies: 88
-* checking Rd cross-references ... NOTE
+Run `cloud_details(, "ddpcr")` for more info
+
+
+
+## Newly broken
+
+* checking whether package ‘ddpcr’ can be installed ... WARNING
```
- Package unavailable to check Rd xrefs: ‘fdrtool’
+ Found the following significant warnings:
+ Warning: `mutate_()` is deprecated as of dplyr 0.7.0.
+ Warning: `select_()` is deprecated as of dplyr 0.7.0.
+ See ‘/tmp/workdir/ddpcr/new/ddpcr.Rcheck/00install.out’ for details.
```
# disk.frame
@@ -479,7 +494,7 @@ Run `revdep_details(,"DEGreport")` for more info
* Date/Publication: 2020-05-08 13:10:10 UTC
* Number of recursive dependencies: 105
-Run `revdep_details(,"disk.frame")` for more info
+Run `cloud_details(, "disk.frame")` for more info
@@ -517,18 +532,17 @@ Run `revdep_details(,"disk.frame")` for more info
Extensions’ manual.
```
-# DLMtool
+# distrr
-* Version: 5.4.3
-* Source code: https://github.com/cran/DLMtool
-* URL: http://www.datalimitedtoolkit.org/
-* BugReports: https://github.com/DLMtool/DLMtool/issues
-* Date/Publication: 2020-04-16 21:20:10 UTC
-* Number of recursive dependencies: 128
+* Version: 0.0.5
+* Source code: https://github.com/cran/distrr
+* URL: https://gibonet.github.io/distrr, https://github.com/gibonet/distrr
+* Date/Publication: 2019-01-03 10:50:06 UTC
+* Number of recursive dependencies: 24
-Run `revdep_details(,"DLMtool")` for more info
+Run `cloud_details(, "distrr")` for more info
@@ -537,37 +551,27 @@ Run `revdep_details(,"DLMtool")` for more info
* checking examples ... ERROR
```
...
- >
- > DCACs(1, DLMtool::Atlantic_mackerel, plot=TRUE)
- TAC (median)
- 5.885724
- >
- > DCAC(1, DLMtool::Atlantic_mackerel, plot=TRUE)
- TAC (median)
- 5.299291
- >
- > DCAC_40(1, DLMtool::Atlantic_mackerel, plot=TRUE)
- TAC (median)
- 6.860386
- >
- > Data <- DLMtool::Atlantic_mackerel
- > Data@LHYear <- 2005
- > DCAC4010(1, Data, plot=TRUE)
- TAC (median)
- 1.576309
- >
- > DCAC_ML(1, DLMtool::SimulatedData, plot=TRUE)
- libc++abi.dylib: __cxa_guard_acquire detected deadlock
- ```
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 5.6Mb
- sub-directories of 1Mb or more:
- R 2.0Mb
- data 2.1Mb
+ > str(invented_wages)
+ tibble [1,000 × 5] (S3: tbl_df/data.frame)
+ $ gender : Factor w/ 2 levels "men","women": 1 2 1 2 1 1 1 2 2 2 ...
+ $ sector : Factor w/ 2 levels "secondary","tertiary": 2 1 2 2 1 1 2 1 2 1 ...
+ $ education : Factor w/ 3 levels "I","II","III": 3 2 2 2 2 1 3 1 2 2 ...
+ $ wage : num [1:1000] 8400 4200 5100 7400 4300 4900 5400 2900 4500 3000 ...
+ $ sample_weights: num [1:1000] 105 32 36 12 21 46 79 113 34 32 ...
+ > tmp <- dcc(.data = invented_wages,
+ + .variables = c("gender", "sector"), .fun = jointfun_)
+ Error: `vec_ptype2.tbl_df.tbl_df()` is implemented at C level.
+ This R function is purely indicative and should never be called.
+ Backtrace:
+ █
+ 1. ├─distrr::dcc(...)
+ 2. │ └─distrr::dcc5(...)
+ 3. │ └─distrr:::prepare_data(...)
+ 4. │ └─dplyr::bind_cols(data_vars, data_others)
+ 5. │ └─vctrs::vec_cbind(!!!dots)
+ 6. └─vctrs:::vec_ptype2.tbl_df.tbl_df(...)
+ 7. └─vctrs:::stop_native_implementation("vec_ptype2.tbl_df.tbl_df")
+ Execution halted
```
# docxtools
@@ -581,7 +585,7 @@ Run `revdep_details(,"DLMtool")` for more info
* Date/Publication: 2019-02-09 18:43:13 UTC
* Number of recursive dependencies: 75
-Run `revdep_details(,"docxtools")` for more info
+Run `cloud_details(, "docxtools")` for more info
@@ -613,9 +617,9 @@ Run `revdep_details(,"docxtools")` for more info
Execution halted
```
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
6. dplyr:::mutate_cols(.data, ...)
@@ -646,15 +650,15 @@ Run `revdep_details(,"docxtools")` for more info
* Date/Publication: 2018-06-13 22:03:03 UTC
* Number of recursive dependencies: 69
-Run `revdep_details(,"driftR")` for more info
+Run `cloud_details(, "driftR")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Attributes: < Component "class": Lengths (3, 1) differ (string compare on first 1) >
@@ -674,58 +678,6 @@ Run `revdep_details(,"driftR")` for more info
Execution halted
```
-# DuoClustering2018
-
-
-
-* Version: 1.6.0
-* Source code: https://github.com/cran/DuoClustering2018
-* Date/Publication: 2020-05-07
-* Number of recursive dependencies: 158
-
-Run `revdep_details(,"DuoClustering2018")` for more info
-
-
-
-## Newly broken
-
-* R CMD check timed out
-
-
-* checking R code for possible problems ... NOTE
- ```
- ...
- plot_timing: no visible binding for global variable ‘dataset’
- plot_timing: no visible binding for global variable ‘method’
- plot_timing: no visible binding for global variable ‘run’
- plot_timing: no visible binding for global variable ‘k’
- plot_timing: no visible binding for global variable ‘cluster’
- plot_timing: no visible binding for global variable ‘trueclass’
- plot_timing: no visible binding for global variable ‘est_k’
- plot_timing: no visible binding for global variable ‘elapsed’
- plot_timing: no visible binding for global variable ‘sce’
- plot_timing: no visible binding for global variable ‘filtering’
- plot_timing: no visible binding for global variable ‘truenclust’
- plot_timing: no visible binding for global variable ‘median.elapsed’
- plot_timing: no visible binding for global variable ‘med.t’
- plot_timing: no visible binding for global variable ‘norm.time’
- plot_timing: no visible binding for global variable ‘medianelapsed’
- Undefined global functions or variables:
- ARI ari.stab cell cluster data.wide dataset ds ds.norm elapsed
- entropy est_k estnclust filtering k k_diff med.t medARI
- median.elapsed median.stability medianARI medianelapsed method
- norm.time run s s.norm s.true s.true.norm sce stability trueclass
- truenclust
- ```
-
-## Newly fixed
-
-* checking whether package ‘DuoClustering2018’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DuoClustering2018/old/DuoClustering2018.Rcheck/00install.out’ for details.
- ```
-
# easyr
@@ -737,25 +689,25 @@ Run `revdep_details(,"DuoClustering2018")` for more info
* Date/Publication: 2020-03-20 18:10:05 UTC
* Number of recursive dependencies: 92
-Run `revdep_details(,"easyr")` for more info
+Run `cloud_details(, "easyr")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
- trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/plyr_1.8.6.tgz'
- Content type 'application/x-gzip' length 1010994 bytes (987 KB)
- ==================================================
- downloaded 987 KB
-
+ ** installing vignettes
+ ** testing if installed package can be loaded from temporary location
+ ** testing if installed package can be loaded from final location
+ ** testing if installed package keeps a record of temporary installation path
+ * DONE (doParallel)
- The downloaded binary packages are in
- /var/folders/4b/hn4fq98s6810s4ccv2f9hm2h0000gn/T//RtmpZ3Qqhi/downloaded_packages
+ The downloaded source packages are in
+ '/tmp/RtmpOadHAs/downloaded_packages'
══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 286 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 2 ]
1. Failure: works as expected (@test_bindf-joinf.R#57)
@@ -775,7 +727,7 @@ Run `revdep_details(,"easyr")` for more info
* Date/Publication: 2018-02-04 19:06:12 UTC
* Number of recursive dependencies: 108
-Run `revdep_details(,"eda4treeR")` for more info
+Run `cloud_details(, "eda4treeR")` for more info
@@ -827,7 +779,7 @@ Run `revdep_details(,"eda4treeR")` for more info
* Date/Publication: 2020-03-03 00:20:02 UTC
* Number of recursive dependencies: 73
-Run `revdep_details(,"egor")` for more info
+Run `cloud_details(, "egor")` for more info
@@ -860,7 +812,7 @@ Run `revdep_details(,"egor")` for more info
* Date/Publication: 2019-01-23 20:30:03 UTC
* Number of recursive dependencies: 65
-Run `revdep_details(,"episheet")` for more info
+Run `cloud_details(, "episheet")` for more info
@@ -892,9 +844,9 @@ Run `revdep_details(,"episheet")` for more info
Execution halted
```
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
@@ -914,6 +866,45 @@ Run `revdep_details(,"episheet")` for more info
Execution halted
```
+# europepmc
+
+
+
+* Version: 0.3
+* Source code: https://github.com/cran/europepmc
+* URL: http://github.com/ropensci/europepmc/
+* BugReports: http://github.com/ropensci/europepmc/issues
+* Date/Publication: 2018-04-20 07:41:01 UTC
+* Number of recursive dependencies: 77
+
+Run `cloud_details(, "europepmc")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ 3. europepmc:::FUN(X[[i]], ...)
+ 4. europepmc::epmc_profile(queryforall, synonym)
+ 5. europepmc:::rebi_GET(...)
+ 6. europepmc:::rGET(...)
+ 7. httr::VERB(...)
+ 8. httr:::request_perform(req, hu$handle$handle)
+ 10. httr:::request_fetch.write_memory(req$output, req$url, handle)
+ 11. curl::curl_fetch_memory(url, handle = handle)
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 0 | SKIPPED: 17 | WARNINGS: 0 | FAILED: 1 ]
+ 1. Error: epmc_hits_trend synonym search works correctly (@test_epmc_hits_trend.R#39)
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
# expstudies
@@ -923,15 +914,15 @@ Run `revdep_details(,"episheet")` for more info
* Date/Publication: 2019-06-14 11:20:03 UTC
* Number of recursive dependencies: 53
-Run `revdep_details(,"expstudies")` for more info
+Run `cloud_details(, "expstudies")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
══ testthat results ═══════════════════════════════════════════════════════════
@@ -951,18 +942,83 @@ Run `revdep_details(,"expstudies")` for more info
Execution halted
```
-# fabletools
+# fable
-* Version: 0.1.3
-* Source code: https://github.com/cran/fabletools
+* Version: 0.2.0
+* Source code: https://github.com/cran/fable
+* URL: https://fable.tidyverts.org, https://github.com/tidyverts/fable
+* BugReports: https://github.com/tidyverts/fable/issues
+* Date/Publication: 2020-04-22 13:12:08 UTC
+* Number of recursive dependencies: 99
+
+Run `cloud_details(, "fable")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ ...
+ ✖ `vars` must be a character vector.
+ ℹ Input `cmp` is `map(.fit, components)`.
+ Backtrace:
+ █
+ 1. └─`%>%`(...)
+ 2. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
+ 3. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 5. └─`_fseq`(`_lhs`)
+ 6. └─magrittr::freduce(value, `_function_list`)
+ 7. ├─base::withVisible(function_list[[k]](value))
+ 8. └─function_list[[k]](value)
+ 9. ├─generics::components(.)
+ 10. └─fabletools:::components.mdl_df(.)
+ 11. ├─dplyr::transmute(...)
+ 12. └─dplyr:::transmute.data.frame(...)
+ 13. ├─dplyr::mutate(.data, ..., .keep = "none")
+ 14. └─dplyr:::mutate.data.frame(.data, ..., .keep = "none")
+ 15. └─dplyr:::mutate_cols(.data, ...)
+
+
+* Version: 0.1.3
+* Source code: https://github.com/cran/fabletools
* URL: http://fabletools.tidyverts.org/, https://github.com/tidyverts/fabletools
* BugReports: https://github.com/tidyverts/fabletools/issues
* Date/Publication: 2020-03-24 07:10:02 UTC
* Number of recursive dependencies: 92
-Run `revdep_details(,"fabletools")` for more info
+Run `cloud_details(, "fabletools")` for more info
@@ -994,9 +1050,9 @@ Run `revdep_details(,"fabletools")` for more info
Execution halted
```
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
21. tsibble:::retain_tsibble(mut_data, key(.data), index(.data))
@@ -1016,17 +1072,18 @@ Run `revdep_details(,"fabletools")` for more info
Execution halted
```
-# fingertipscharts
+# finalfit
-* Version: 0.0.10
-* Source code: https://github.com/cran/fingertipscharts
-* BugReports: https://github.com/PublicHealthEngland/fingertipscharts/issues
-* Date/Publication: 2019-10-07 15:00:03 UTC
-* Number of recursive dependencies: 142
+* Version: 1.0.1
+* Source code: https://github.com/cran/finalfit
+* URL: https://github.com/ewenharrison/finalfit
+* BugReports: https://github.com/ewenharrison/finalfit/issues
+* Date/Publication: 2020-04-21 11:50:02 UTC
+* Number of recursive dependencies: 135
-Run `revdep_details(,"fingertipscharts")` for more info
+Run `cloud_details(, "finalfit")` for more info
@@ -1035,60 +1092,29 @@ Run `revdep_details(,"fingertipscharts")` for more info
* checking examples ... ERROR
```
...
- + -0.15, -0.05, 1.08),
- + dps = NA)
- Error: Column 5 must be named.
- Backtrace:
- █
- 1. └─fingertipscharts::area_profiles(...)
- 2. └─fingertipscharts:::spine_rescaler(...)
- 3. └─`%>%`(...)
- 4. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
- 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 6. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 7. └─fingertipscharts:::`_fseq`(`_lhs`)
- 8. └─magrittr::freduce(value, `_function_list`)
- 9. └─function_list[[i]](value)
- 10. └─tibble::rownames_to_column(., var = rlang::quo_text(indicator))
- 11. └─tibble:::repaired_names(c(unique(names2(df)), var))
- 12. └─tibble:::subclass_name_repair_errors(...)
- 13. └─base::tryCatch(...)
- 14. └─base:::tryCatchList(expr, classes, parentenv, handlers)
- 15. ├─base:::tryCatchOne(...
+ mort_5yr mort_5yr.num n
+ 1 Alive 1 511
+ 2 Died 2 404
+ 3 NA 14
+
+ $counts[[19]]
+ sex.factor2 age.factor2 n
+ 1 M <60 years 204
+ 2 M 60+ years 241
+ 3 F <60 years 210
+ 4 F 60+ years 274
+
+
+ >
+ > # Select a tibble and expand
+ > out$counts[[9]] %>%
+ + print(n = Inf)
+ Error in print.default(m, ..., quote = quote, right = right, max = max) :
+ invalid 'na.print' specification
+ Calls: %>% ... print -> print.data.frame -> print -> print.default
Execution halted
```
-* checking tests ...
- ```
- ERROR
- Running the tests in ‘tests/a-l.R’ failed.
- Last 13 lines of output:
- 12. tibble:::subclass_name_repair_errors(...)
- 13. base::tryCatch(...)
- 14. base:::tryCatchList(expr, classes, parentenv, handlers)
- 17. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
- 20. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
- 21. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]])
- 22. value[[3L]](cond)
-
- ══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 1 | SKIPPED: 15 | WARNINGS: 0 | FAILED: 2 ]
- 1. Error: (unknown) (@test-area-profiles.R#25)
- 2. Error: (unknown) (@test-examples.R#141)
-
- Error: testthat unit tests failed
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘curl’ ‘mapproj’
- All declared Imports should be used.
- ```
-
# foieGras
@@ -1100,7 +1126,7 @@ Run `revdep_details(,"fingertipscharts")` for more info
* Date/Publication: 2019-10-07 22:10:03 UTC
* Number of recursive dependencies: 100
-Run `revdep_details(,"foieGras")` for more info
+Run `cloud_details(, "foieGras")` for more info
@@ -1132,16 +1158,16 @@ Run `revdep_details(,"foieGras")` for more info
New names:
```
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── 2. Error: (unknown) (@test-plot.R#7) ───────────────────────────────────────
Can't subset columns that don't exist.
✖ Column `shut.up` doesn't exist.
Backtrace:
- 1. base::plot(fssm, what = "fitted")
+ 1. graphics::plot(fssm, what = "fitted")
31. vctrs:::stop_subscript_oob(...)
32. vctrs:::stop_subscript(...)
@@ -1158,9 +1184,9 @@ Run `revdep_details(,"foieGras")` for more info
* checking installed package size ... NOTE
```
- installed size is 13.7Mb
+ installed size is 35.2Mb
sub-directories of 1Mb or more:
- libs 12.4Mb
+ libs 34.0Mb
```
# geometr
@@ -1174,15 +1200,15 @@ Run `revdep_details(,"foieGras")` for more info
* Date/Publication: 2020-03-30 10:20:02 UTC
* Number of recursive dependencies: 86
-Run `revdep_details(,"geometr")` for more info
+Run `cloud_details(, "geometr")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Simple feature collection with 100 features and 14 fields
@@ -1210,49 +1236,6 @@ Run `revdep_details(,"geometr")` for more info
All declared Imports should be used.
```
-# geomnet
-
-
-
-* Version: 0.2.0
-* Source code: https://github.com/cran/geomnet
-* URL: http://github.com/sctyner/geomnet
-* BugReports: https://github.com/sctyner/geomnet/issues
-* Date/Publication: 2016-12-08 20:38:18
-* Number of recursive dependencies: 93
-
-Run `revdep_details(,"geomnet")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- ...
- ℹ Input `wt` is `n()`.
- ℹ The error occured in group 1: from_id = "A-", to_id = "A+".
- Backtrace:
- █
- 1. ├─(function (x, ...) ...
- 2. └─ggplot2:::print.ggplot(x)
- 3. ├─ggplot2::ggplot_build(x)
- 4. └─ggplot2:::ggplot_build.ggplot(x)
- 5. └─ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout))
- 6. └─ggplot2:::f(l = layers[[i]], d = data[[i]])
- 7. └─l$compute_statistic(d, layout)
- 8. └─ggplot2:::f(..., self = self)
- 9. └─self$stat$compute_layer(data, params, layout)
- 10. └─geomnet:::f(..., self = self)
- 11. └─self$compute_panel(...)
- 12. └─geomnet:::f(..., self = self)
- 13. └─self$compute_network(...)
- 14. └─geomnet:::f(...)
- 15. ├─dplyr::summarise(edges, wt = n())
- 16.
- Execution halted
- ```
-
# getTBinR
@@ -1264,15 +1247,16 @@ Run `revdep_details(,"geomnet")` for more info
* Date/Publication: 2019-09-03 13:50:06 UTC
* Number of recursive dependencies: 149
-Run `revdep_details(,"getTBinR")` for more info
+Run `cloud_details(, "getTBinR")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘spelling.R’
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Attributes: < Names: 2 string mismatches >
@@ -1303,7 +1287,7 @@ Run `revdep_details(,"getTBinR")` for more info
* Date/Publication: 2018-07-03 21:50:02 UTC
* Number of recursive dependencies: 79
-Run `revdep_details(,"ggedit")` for more info
+Run `cloud_details(, "ggedit")` for more info
@@ -1354,15 +1338,15 @@ Run `revdep_details(,"ggedit")` for more info
* Date/Publication: 2020-03-29 18:30:05 UTC
* Number of recursive dependencies: 111
-Run `revdep_details(,"gratia")` for more info
+Run `cloud_details(, "gratia")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘test-all.R’
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:
Backtrace:
@@ -1382,6 +1366,46 @@ Run `revdep_details(,"gratia")` for more info
Execution halted
```
+# groupedstats
+
+
+
+* Version: 1.0.0
+* Source code: https://github.com/cran/groupedstats
+* URL: https://indrajeetpatil.github.io/groupedstats/, https://github.com/IndrajeetPatil/groupedstats/
+* BugReports: https://github.com/IndrajeetPatil/groupedstats/issues/
+* Date/Publication: 2020-05-05 16:20:03 UTC
+* Number of recursive dependencies: 120
+
+Run `cloud_details(, "groupedstats")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘spelling.R’
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+
+ ── 5. Failure: grouped_proptest works - with NAs (@test-grouped_proptest.R#111)
+ df2$statistic not equal to c(...).
+ names for target but not for current
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 30 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 5 ]
+ 1. Failure: grouped_proptest works - without NAs (@test-grouped_proptest.R#37)
+ 2. Failure: grouped_proptest works - without NAs (@test-grouped_proptest.R#49)
+ 3. Failure: grouped_proptest works - without NAs (@test-grouped_proptest.R#52)
+ 4. Failure: grouped_proptest works - with NAs (@test-grouped_proptest.R#87)
+ 5. Failure: grouped_proptest works - with NAs (@test-grouped_proptest.R#111)
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
# HaDeX
@@ -1391,7 +1415,7 @@ Run `revdep_details(,"gratia")` for more info
* Date/Publication: 2020-02-06 13:50:02 UTC
* Number of recursive dependencies: 127
-Run `revdep_details(,"HaDeX")` for more info
+Run `cloud_details(, "HaDeX")` for more info
@@ -1423,9 +1447,10 @@ Run `revdep_details(,"HaDeX")` for more info
Execution halted
```
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘spelling.R’
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
@@ -1465,7 +1490,7 @@ Run `revdep_details(,"HaDeX")` for more info
* Date/Publication: 2020-02-28 18:00:05 UTC
* Number of recursive dependencies: 119
-Run `revdep_details(,"healthcareai")` for more info
+Run `cloud_details(, "healthcareai")` for more info
@@ -1508,15 +1533,15 @@ Run `revdep_details(,"healthcareai")` for more info
* Date/Publication: 2019-09-10 22:50:10 UTC
* Number of recursive dependencies: 126
-Run `revdep_details(,"idmodelr")` for more info
+Run `cloud_details(, "idmodelr")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── 4. Failure: generate_parameter_permutations can use a single parameter sample
@@ -1536,223 +1561,250 @@ Run `revdep_details(,"idmodelr")` for more info
Execution halted
```
-# isomiRs
+# immunarch
-* Version: 1.16.1
-* Source code: https://github.com/cran/isomiRs
-* BugReports: https://github.com/lpantano/isomiRs/issues
-* Date/Publication: 2020-05-26
-* Number of recursive dependencies: 148
+* Version: 0.6.4
+* Source code: https://github.com/cran/immunarch
+* URL: https://immunarch.com/, https://github.com/immunomind/immunarch
+* BugReports: https://github.com/immunomind/immunarch/issues
+* Date/Publication: 2020-05-13 08:00:02 UTC
+* Number of recursive dependencies: 167
-Run `revdep_details(,"isomiRs")` for more info
+Run `cloud_details(, "immunarch")` for more info
## Newly broken
-* checking tests ...
+* checking examples ... ERROR
```
- ERROR
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- ℹ The error occured in group 1: merge = "one_groupcontrol_1", cluster = 1, xaxis = "control_1", colored = "one_group".
- Backtrace:
- 1. testthat::expect_equal(unique(.cluster_exp(gene)), c(1, 2))
- 5. isomiRs:::.cluster_exp(gene)
- 6. DEGreport::degPatterns(ma, meta, time = "xaxis", minc = 0, plot = FALSE)
- 4. dplyr::group_by(...)
- 11. dplyr::summarise(., abundance = median(value), n_genes = n())
- 16. dplyr:::summarise_cols(.data, ...)
-
- ══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 27 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 1 ]
- 1. Error: matrix (@test_calculus.R#23)
-
- Error: testthat unit tests failed
- Execution halted
+ Running examples in ‘immunarch-Ex.R’ failed
+ The error most likely occurred in:
+
+ > ### Name: pubRep
+ > ### Title: Create a repertoire of public clonotypes
+ > ### Aliases: pubRep publicRepertoire
+ >
+ > ### ** Examples
+ >
+ > # Subset the data to make the example faster to run
+ > immdata$data <- lapply(immdata$data, head, 2000)
+ > pr <- pubRep(immdata$data, .verbose=FALSE)
+ > vis(pr, "clonotypes", 1, 2)
+ Warning: You are using a dplyr method on a raw data.table, which will call the
```
## In both
+* checking installed package size ... NOTE
+ ```
+ installed size is 7.8Mb
+ sub-directories of 1Mb or more:
+ data 2.1Mb
+ doc 4.2Mb
+ ```
+
+* checking dependencies in R code ... NOTE
+ ```
+ Namespace in Imports field not imported from: ‘dbplyr’
+ All declared Imports should be used.
+ ```
+
+# IncucyteDRC
+
+
+
+* Version: 0.5.4
+* Source code: https://github.com/cran/IncucyteDRC
+* URL: https://github.com/chapmandu2/IncucyteDRC
+* BugReports: https://github.com/chapmandu2/IncucyteDRC/issues
+* Date/Publication: 2016-04-23 14:21:03
+* Number of recursive dependencies: 119
+
+Run `cloud_details(, "IncucyteDRC")` for more info
+
+
+
+## Newly broken
+
* checking examples ... ERROR
```
...
- Joining, by = "merge"
- Error: Problem with `summarise()` input `n_genes`.
- ✖ could not find function "n"
- ℹ Input `n_genes` is `n()`.
- ℹ The error occured in group 1: merge = "one_groupcontrol", cluster = 1, xaxis = "control", colored = "one_group".
+ ✖ could not find function "row_number"
+ ℹ Input `idx` is `row_number()`.
+ ℹ The error occured in group 1: sampleid = "PDD00017273", conc = 0.3703704.
Backtrace:
█
- 1. └─isomiRs::isoNetwork(...)
- 2. └─isomiRs:::.viz_mirna_gene_enrichment(...)
- 3. └─isomiRs:::.cluster_exp(...)
- 4. └─DEGreport::degPatterns(ma, meta, time = "xaxis", minc = 0, plot = FALSE)
- 5. └─`%>%`(...)
- 6. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
- 7. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 8. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 9. └─DEGreport:::`_fseq`(`_lhs`)
- 10. └─magrittr::freduce(value, `_function_list`)
- 11. └─function_list[[i]](value)
- 12. ├─dplyr::summarise(., abundance = median(value), n_genes = n())
- 13.
+ 1. └─IncucyteDRC::fitDoseResponseCurve(test_idrc_set)
+ 2. └─IncucyteDRC::exportDRCDataToDataFrame(idrc_set, include_control)
+ 3. └─`%>%`(...)
+ 4. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
+ 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 6. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 7. └─IncucyteDRC:::`_fseq`(`_lhs`)
+ 8. └─magrittr::freduce(value, `_function_list`)
+ 9. └─function_list[[i]](value)
+ 10. ├─dplyr::mutate(., idx = row_number())
+ 11. └─dplyr:::mutate.data.frame(., idx = row_number())
+ 12. └─dplyr:::mutate_cols(.data, ...)
+
+ Backtrace:
+ █
Execution halted
```
-* checking package dependencies ... NOTE
- ```
- Package suggested but not available for checking: ‘targetscan.Hs.eg.db’
- ```
+# infer
-* checking for hidden files and directories ... NOTE
- ```
- Found the following hidden files and directories:
- .travis.yml
- These were most likely included in error. See section ‘Package
- structure’ in the ‘Writing R Extensions’ manual.
- ```
+
-* checking R code for possible problems ... NOTE
- ```
- ...
- ‘targetscan.Hs.egMIRNA’
- mirna2targetscan: no visible binding for global variable
- ‘targetscan.Hs.egMIRBASE2FAMILY’
- mirna2targetscan: no visible binding for global variable
- ‘targetscan.Hs.egTARGETS’
- mirna2targetscan: no visible binding for global variable
- ‘targetscan.Hs.egTARGETSFULL’
- mirna2targetscan: no visible binding for global variable
- ‘targetscan.Mm.egMIRNA’
- mirna2targetscan: no visible binding for global variable
- ‘targetscan.Mm.egMIRBASE2FAMILY’
- mirna2targetscan: no visible binding for global variable
- ‘targetscan.Mm.egTARGETS’
- mirna2targetscan: no visible binding for global variable
- ‘targetscan.Mm.egTARGETSFULL’
- Undefined global functions or variables:
- as.tibble changes hits iso_sample pct targetscan.Hs.egMIRBASE2FAMILY
- targetscan.Hs.egMIRNA targetscan.Hs.egTARGETS
- targetscan.Hs.egTARGETSFULL targetscan.Mm.egMIRBASE2FAMILY
- targetscan.Mm.egMIRNA targetscan.Mm.egTARGETS
- targetscan.Mm.egTARGETSFULL total
- ```
-
-# lans2r
-
-
-
-* Version: 1.0.5
-* Source code: https://github.com/cran/lans2r
-* URL: https://github.com/KopfLab/lans2r
-* BugReports: https://github.com/KopfLab/lans2r/issues
-* Date/Publication: 2017-05-24 04:25:53 UTC
-* Number of recursive dependencies: 79
+* Version: 0.5.1
+* Source code: https://github.com/cran/infer
+* URL: https://github.com/tidymodels/infer, https://infer.netlify.com/
+* BugReports: https://github.com/tidymodels/infer/issues
+* Date/Publication: 2019-11-19 10:30:02 UTC
+* Number of recursive dependencies: 115
-Run `revdep_details(,"lans2r")` for more info
+Run `cloud_details(, "infer")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
- `... <- NULL` produced warnings.
-
- ── 2. Failure: test that transformation safety checks are in place (@test-transf
- spread_data(bind_rows(a, b)) not equal to full_join(...).
- Names: 2 string mismatches
- Component 3: Mean relative difference: 0.9281371
- Component 4: Mean relative difference: 7.749237
+ gen_iris12 %>% calculate(stat = "count") not equal to `%>%`(...).
+ Attributes: < Names: 1 string mismatch >
+ Attributes: < Length mismatch: comparison on first 2 components >
+ Attributes: < Component 2: Modes: logical, numeric >
+ Attributes: < Component 2: Lengths: 1, 10 >
+ Attributes: < Component 2: target is logical, current is numeric >
══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 142 | SKIPPED: 0 | WARNINGS: 7 | FAILED: 2 ]
- 1. Failure: test that it is possible to load LANS maps (@test-load-data.R#81)
- 2. Failure: test that transformation safety checks are in place (@test-transformations.R#13)
+ [ OK: 339 | SKIPPED: 60 | WARNINGS: 21 | FAILED: 3 ]
+ 1. Failure: chi-square matches chisq.test value (@test-calculate.R#219)
+ 2. Failure: chi-square matches chisq.test value (@test-calculate.R#236)
+ 3. Failure: calc_impl.count works (@test-calculate.R#473)
Error: testthat unit tests failed
Execution halted
```
-# LexisNexisTools
+## In both
+
+* checking dependencies in R code ... NOTE
+ ```
+ Namespace in Imports field not imported from: ‘lifecycle’
+ All declared Imports should be used.
+ ```
+
+# iRF
-* Version: 0.3.0
-* Source code: https://github.com/cran/LexisNexisTools
-* URL: https://github.com/JBGruber/LexisNexisTools
-* BugReports: https://github.com/JBGruber/LexisNexisTools/issues
-* Date/Publication: 2020-01-09 23:00:03 UTC
-* Number of recursive dependencies: 134
+* Version: 2.0.0
+* Source code: https://github.com/cran/iRF
+* URL: https://arxiv.org/abs/1706.08457
+* Date/Publication: 2017-07-26 04:57:45 UTC
+* Number of recursive dependencies: 61
+
+Run `cloud_details(, "iRF")` for more info
+
+
+
+## Newly broken
+
+* checking whether package ‘iRF’ can be installed ... WARNING
+ ```
+ Found the following significant warnings:
+ Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
+ See ‘/tmp/workdir/iRF/new/iRF.Rcheck/00install.out’ for details.
+ ```
+
+# jpndistrict
+
+
+
+* Version: 0.3.6
+* Source code: https://github.com/cran/jpndistrict
+* URL: https://uribo.github.io/jpndistrict
+* BugReports: https://github.com/uribo/jpndistrict/issues
+* Date/Publication: 2020-04-20 07:50:07 UTC
+* Number of recursive dependencies: 101
-Run `revdep_details(,"LexisNexisTools")` for more info
+Run `cloud_details(, "jpndistrict")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
- |++++++++++ | 20% ~00s
- |+++++++++++++++ | 30% ~00s
- |++++++++++++++++++++ | 40% ~00s
- |+++++++++++++++++++++++++ | 50% ~00s
- |++++++++++++++++++++++++++++++ | 60% ~00s
- |+++++++++++++++++++++++++++++++++++ | 70% ~00s
- |++++++++++++++++++++++++++++++++++++++++ | 80% ~00s
- |+++++++++++++++++++++++++++++++++++++++++++++ | 90% ~00s
- |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=00s
+ downloaded 9427 bytes
+
+ options: ENCODING=cp932
+ Reading layer `P34-14_47' from data source `/tmp/RtmpMd0GRu/P34-14_47_GML/P34-14_47.shp' using driver `ESRI Shapefile'
+ Simple feature collection with 65 features and 4 fields
+ geometry type: POINT
+ dimension: XY
+ bbox: xmin: 123.0045 ymin: 24.06092 xmax: 131.2989 ymax: 27.03917
+ CRS: EPSG:4612
══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 97 | SKIPPED: 2 | WARNINGS: 0 | FAILED: 1 ]
- 1. Failure: Convert LNToutput to tidytext (@test-lnt_convert.R#102)
+ [ OK: 93 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 1 ]
+ 1. Error: (unknown) (@test-export.R#3)
Error: testthat unit tests failed
Execution halted
```
-# mmetrics
+## In both
+
+* checking data for non-ASCII characters ... NOTE
+ ```
+ Note: found 188 marked UTF-8 strings
+ ```
+
+# keyATM
-* Version: 0.3.0
-* Source code: https://github.com/cran/mmetrics
-* URL: https://github.com/y-bar/mmetrics
-* BugReports: https://github.com/y-bar/mmetrics/issues
-* Date/Publication: 2019-07-26 08:50:02 UTC
-* Number of recursive dependencies: 96
+* Version: 0.2.0
+* Source code: https://github.com/cran/keyATM
+* URL: https://keyatm.github.io/keyATM/
+* BugReports: https://github.com/keyATM/keyATM/issues
+* Date/Publication: 2020-05-23 12:30:02 UTC
+* Number of recursive dependencies: 108
-Run `revdep_details(,"mmetrics")` for more info
+Run `cloud_details(, "keyATM")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
-
+ 0% 10 20 30 40 50 60 70 80 90 100%
+ [----|----|----|----|----|----|----|----|----|----|
+ **************************************************|
+ 0% 10 20 30 40 50 60 70 80 90 100%
+ [----|----|----|----|----|----|----|----|----|----|
+ **************************************************|
+ 0% 10 20 30 40 50 60 70 80 90 100%
+ [----|----|----|----|----|----|----|----|----|----|
+ **************************************************|
══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ]
- 1. Error: summarize one key (@test-mmetrics.R#16)
- 2. Error: summarize two keys (@test-mmetrics.R#21)
- 3. Error: summarize all (@test-mmetrics.R#26)
- 4. Error: mutate one key (@test-mmetrics.R#31)
- 5. Error: mutate two keys (@test-mmetrics.R#36)
- 6. Error: mutate all with (@test-mmetrics.R#41)
- 7. Failure: mutate with non summarize mode to evaluate ratio (@test-mmetrics.R#48)
- 8. Failure: not evaluatable metrics must be removed without error (@test-mmetrics.R#55)
- 9. Error: not evaluatable metrics must be removed without error (@test-mmetrics.R#63)
+ [ OK: 38 | SKIPPED: 19 | WARNINGS: 0 | FAILED: 1 ]
+ 1. Error: Visualizing keywords (@test-Initialization.R#17)
Error: testthat unit tests failed
Execution halted
@@ -1760,117 +1812,188 @@ Run `revdep_details(,"mmetrics")` for more info
## In both
+* checking installed package size ... NOTE
+ ```
+ installed size is 16.5Mb
+ sub-directories of 1Mb or more:
+ libs 16.1Mb
+ ```
+
* checking dependencies in R code ... NOTE
```
- Namespaces in Imports field not imported from:
- ‘magrittr’ ‘stringr’
+ Namespace in Imports field not imported from: ‘quanteda’
All declared Imports should be used.
```
-# MSstatsTMT
+# kiwisR
-* Version: 1.6.1
-* Source code: https://github.com/cran/MSstatsTMT
-* URL: http://msstats.org/msstatstmt/
-* BugReports: https://groups.google.com/forum/#!forum/msstats
-* Date/Publication: 2020-05-12
-* Number of recursive dependencies: 101
+* Version: 0.1.8
+* Source code: https://github.com/cran/kiwisR
+* URL: https://github.com/rywhale/kiwisR
+* BugReports: https://github.com/rywhale/kiwisR/issues
+* Date/Publication: 2019-12-15 16:10:02 UTC
+* Number of recursive dependencies: 71
-Run `revdep_details(,"MSstatsTMT")` for more info
+Run `cloud_details(, "kiwisR")` for more info
## Newly broken
-* checking examples ... ERROR
- ```
- Running examples in ‘MSstatsTMT-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: dataProcessPlotsTMT
- > ### Title: Visualization for explanatory data analysis - TMT experiment
- > ### Aliases: dataProcessPlotsTMT
- >
- > ### ** Examples
- >
- > data(input.pd)
- > quant.msstats <- proteinSummarization(input.pd,
- + method="msstats",
- + global_norm=TRUE,
- + reference_norm=TRUE)
- Joining, by = c("Run", "Channel")
- Summarizing for Run : 161117_SILAC_HeLa_UPS1_TMT10_Mixture1_01.raw ( 1 of 15 )
- Error in `[.data.table`(raw, , require.col) :
- j (the 2nd argument inside [...]) is a single symbol but column name 'require.col' is not found. Perhaps you intended DT[, ..require.col]. This difference to data.frame is deliberate and explained in FAQ 1.1.
- Calls: proteinSummarization ... .protein.summarization.function -> dataProcess -> [ -> [.data.table
- Execution halted
- ```
-
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
- > test_check("MSstatsTMT")
- ── 1. Error: proteinSummarization works (@test-proteinSummarization.R#5) ──────
- j (the 2nd argument inside [...]) is a single symbol but column name 'require.col' is not found. Perhaps you intended DT[, ..require.col]. This difference to data.frame is deliberate and explained in FAQ 1.1.
- Backtrace:
- 1. MSstatsTMT::proteinSummarization(...)
- 2. MSstatsTMT:::.protein.summarization.function(...)
- 3. MSstats::dataProcess(...)
- 5. data.table:::`[.data.table`(raw, , require.col)
+ > library(testthat)
+ > library(kiwisR)
+ >
+ > test_check("kiwisR")
+ ── 1. Failure: ki_station_list accepts custom return fields (vector or string) (
+ `stn_cust_retr` not equal to `stn_cust_retr2`.
+ Component "station_id": 96 string mismatches
+ Component "station_no": 96 string mismatches
══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 32 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
- 1. Error: proteinSummarization works (@test-proteinSummarization.R#5)
+ [ OK: 54 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
+ 1. Failure: ki_station_list accepts custom return fields (vector or string) (@test_ki_station_list.R#71)
Error: testthat unit tests failed
Execution halted
```
-# neuropsychology
+# lpirfs
-* Version: 0.5.0
-* Source code: https://github.com/cran/neuropsychology
-* URL: https://github.com/neuropsychology/neuropsychology.R
-* BugReports: https://github.com/neuropsychology/neuropsychology.R/issues
-* Date/Publication: 2017-03-22 19:17:18 UTC
-* Number of recursive dependencies: 154
+* Version: 0.1.7
+* Source code: https://github.com/cran/lpirfs
+* BugReports: https://github.com/adaemmerp/lpirfs/issues
+* Date/Publication: 2019-11-25 09:20:06 UTC
+* Number of recursive dependencies: 135
-Run `revdep_details(,"neuropsychology")` for more info
+Run `cloud_details(, "lpirfs")` for more info
## Newly broken
-* checking examples ... ERROR
+* checking tests ... ERROR
```
- ...
- Error: Can't reconstruct data frame.
- ✖ The `[` method for class must return a data frame.
- ℹ It returned a .
- Backtrace:
- █
- 1. └─neuropsychology::describe(df)
- 2. └─`%>%`(...)
- 3. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
- 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 6. └─neuropsychology:::`_fseq`(`_lhs`)
- 7. └─magrittr::freduce(value, `_function_list`)
- 8. ├─base::withVisible(function_list[[k]](value))
- 9. └─function_list[[k]](value)
- 10. ├─dplyr::transmute_(...)
- 11. └─dplyr:::transmute_.default(...)
- 12. ├─dplyr::transmute(.data, !!!dots)
- 13. └─dplyr:::transmute.data.frame(.data, !!!dots)
- 14. ├─dplyr::mutate(.data, ..., .keep = "none")
- 15. └
- Execution halted
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ Backtrace:
+ 1. lpirfs::lp_nl_panel(...)
+ 6. plm:::model.frame.pdata.frame(...)
+ 8. Formula:::model.frame.Formula(...)
+ 10. stats::model.frame.default(...)
+ 11. [ base::eval(...) ] with 1 more call
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 168 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 3 ]
+ 1. Failure: Test that data is correctly computed. (@test-lp_lin_panel.R#737)
+ 2. Failure: Test that data is correctly computed. (@test-lp_lin_panel.R#783)
+ 3. Error: Check output of switching variable I (@test-lp_nl_panel.R#948)
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
+## In both
+
+* checking installed package size ... NOTE
+ ```
+ installed size is 8.4Mb
+ sub-directories of 1Mb or more:
+ libs 6.9Mb
+ ```
+
+# mason
+
+
+
+* Version: 0.2.6
+* Source code: https://github.com/cran/mason
+* URL: https://github.com/lwjohnst86/mason
+* BugReports: https://github.com/lwjohnst86/mason/issues
+* Date/Publication: 2018-07-05 12:20:02 UTC
+* Number of recursive dependencies: 67
+
+Run `cloud_details(, "mason")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ Component "estimate": Mean relative difference: 1.999997
+ Component "std.error": Mean relative difference: 0.2627753
+ Component "statistic": Mean relative difference: 1.789258
+ Component "p.value": Mean relative difference: 1.333262
+ Component "conf.low": Mean relative difference: 1.751052
+ Component "conf.high": Mean relative difference: 1.316709
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 76 | SKIPPED: 1 | WARNINGS: 7 | FAILED: 3 ]
+ 1. Failure: (for glm bi) results are equal to real results (no covar) (@test-glm-binomial.R#59)
+ 2. Failure: (for glm bi) results are equal to real results (with covar) (@test-glm-binomial.R#73)
+ 3. Failure: (for glm) results are equal to real results (with covar + int) (@test-glm-binomial.R#88)
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
+## In both
+
+* checking Rd cross-references ... NOTE
+ ```
+ Packages unavailable to check Rd xrefs: ‘ggplot2’, ‘pander’, ‘pixiedust’
+ ```
+
+# mcp
+
+
+
+* Version: 0.2.0
+* Source code: https://github.com/cran/mcp
+* URL: http://lindeloev.github.io/mcp/, https://github.com/lindeloev/mcp
+* BugReports: https://github.com/lindeloev/mcp/issues
+* Date/Publication: 2020-01-09 16:30:02 UTC
+* Number of recursive dependencies: 94
+
+Run `cloud_details(, "mcp")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ 5. Failure: Good variance:
+ y ~ 1, ~0 + sigma(rel(1)), ~x + sigma(x), ~0 + sigma(rel(x)) (@test-runs.R#277)
+ 6. Failure: Good variance:
+ y ~ 1, ~0 + sigma(rel(1)), ~x + sigma(x), ~0 + sigma(rel(x)) (@test-runs.R#277)
+ 7. Failure: Good variance:
+ y ~ 1, 1 + (1 | id) ~ rel(1) + I(x^2) + sigma(rel(1) + x) (@test-runs.R#277)
+ 8. Failure: Good ARMA:
+ y ~ ar(1) + sigma(1 + x), ~ar(2, 1 + I(x^2)) + sigma(1) (@test-runs.R#277)
+ 9. Failure: Good ARMA:
+ y ~ ar(1) + sigma(1 + x), ~ar(2, 1 + I(x^2)) + sigma(1) (@test-runs.R#277)
+ 10. Failure: Good Poisson:
+ y ~ 1 + ar(1), ~1 + x + ar(2, 1 + x + I(x^3)) (@test-runs.R#277)
+
+ Error: testthat unit tests failed
+ Execution halted
```
## In both
@@ -1878,22 +2001,20 @@ Run `revdep_details(,"neuropsychology")` for more info
* checking dependencies in R code ... NOTE
```
Namespaces in Imports field not imported from:
- ‘htmlTable’ ‘lme4’ ‘stringi’
+ ‘bayesplot’ ‘methods’ ‘purrr’
All declared Imports should be used.
```
-# ngsReports
+# metabolighteR
-* Version: 1.4.1
-* Source code: https://github.com/cran/ngsReports
-* URL: https://github.com/steveped/ngsReports
-* BugReports: https://github.com/steveped/ngsReports/issues
-* Date/Publication: 2020-05-21
-* Number of recursive dependencies: 157
+* Version: 0.1.0
+* Source code: https://github.com/cran/metabolighteR
+* Date/Publication: 2019-12-06 10:20:02 UTC
+* Number of recursive dependencies: 47
-Run `revdep_details(,"ngsReports")` for more info
+Run `cloud_details(, "metabolighteR")` for more info
@@ -1901,38 +2022,195 @@ Run `revdep_details(,"ngsReports")` for more info
* checking examples ... ERROR
```
- ...
- > # Load the FASTQC data as a FastqcDataList object
- > fdl <- FastqcDataList(fl)
+ Running examples in ‘metabolighteR-Ex.R’ failed
+ The error most likely occurred in:
+
+ > ### Name: get_studies
+ > ### Title: Get Studies
+ > ### Aliases: get_studies
>
- > # Export the top10 Overrepresented Sequences as a single fasta file
- > faOut <- file.path(tempdir(), "top10.fa")
- > overRep2Fasta(fdl, path = faOut)
- Error: Problem with `summarise()` input `nFiles`.
- ✖ could not find function "n"
- ℹ Input `nFiles` is `n()`.
- ℹ The error occured in group 1: Sequence = "AAAAATATGGAACGCTTCACGAATTTGCGTCATCCTTGCGCAGGGGCCAT".
+ > ### ** Examples
+ >
+ > get_studies()
+ Error in curl::curl_fetch_memory(url, handle = handle) :
+ Empty reply from server
+ Calls: get_studies ... request_fetch -> request_fetch.write_memory ->
+ Execution halted
+ ```
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ Timeout was reached: [www.ebi.ac.uk:443] Operation timed out after 10001 milliseconds with 0 out of 0 bytes received
+ Backtrace:
+ 1. testthat::expect_true(tibble::is_tibble(get_studies()))
+ 5. metabolighteR::get_studies()
+ 9. httr::GET(paste0(getOption("BASE_URL"), "/studies"))
+ 10. httr:::request_perform(req, hu$handle$handle)
+ 12. httr:::request_fetch.write_memory(req$output, req$url, handle)
+ 13. curl::curl_fetch_memory(url, handle = handle)
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
+ 1. Error: tokenless-calls (@test-tokenless.R#5)
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
+# metamicrobiomeR
+
+
+
+* Version: 1.1
+* Source code: https://github.com/cran/metamicrobiomeR
+* URL: https://github.com/nhanhocu/metamicrobiomeR
+* BugReports: https://github.com/nhanhocu/metamicrobiomeR/issues
+* Date/Publication: 2019-09-03 07:20:02 UTC
+* Number of recursive dependencies: 131
+
+Run `cloud_details(, "metamicrobiomeR")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ ...
+ > tl<-colnames(taxtab6)[grep("k__bacteria.p__fusobacteria",colnames(taxtab6))]
+ > taxacom.ex<-taxa.compare(taxtab=taxtab6[,c("personid","x.sampleid","bf","age.sample",tl)],
+ + propmed.rel="gamlss",comvar="bf",adjustvar="age.sample",
+ + longitudinal="yes",p.adjust.method="fdr")
+ Error: Corrupt `grouped_df` using old (< 0.8.0) format.
+ ℹ Strip off old grouping with `ungroup()`.
Backtrace:
- █
- 1. ├─ngsReports::overRep2Fasta(fdl, path = faOut)
- 2. └─ngsReports::overRep2Fasta(fdl, path = faOut)
- 3. ├─dplyr::summarise(...)
- 4. └─dplyr:::summarise.grouped_df(...)
- 5. └─dplyr:::summarise_cols(.data, ...)
-
+ █
+ 1. ├─metamicrobiomeR::taxa.compare(...)
+ 2. │ └─base::as.data.frame(taxtab)
+ 3. ├─taxtab6[, c("personid", "x.sampleid", "bf", "age.sample", tl)]
+ 4. └─dplyr:::`[.grouped_df`(...)
+ 5. └─dplyr:::group_intersect(x, out)
+ 6. ├─generics::intersect(group_vars(x), names(new))
+ 7. ├─dplyr::group_vars(x)
+ 8. └─dplyr:::group_vars.data.frame(x)
+ 9. ├─generics::setdiff(names(group_data(x)), ".rows")
+ 10. ├─dplyr::group_data(x)
+ 11. └─dplyr:::group_data.grouped_df(x)
+ 12. └─dplyr::validate_grouped_df(.data)
+ Execution halted
+ ```
+
+## In both
+
+* checking dependencies in R code ... NOTE
+ ```
+ Namespaces in Imports field not imported from:
+ ‘RCurl’ ‘foreign’ ‘gplots’ ‘httr’ ‘jsonlite’ ‘knitr’ ‘lmerTest’
+ ‘magrittr’ ‘mgcv’ ‘repmis’ ‘reshape2’ ‘rmarkdown’
+ All declared Imports should be used.
+ ```
+
+# mmetrics
+
+
+
+* Version: 0.3.0
+* Source code: https://github.com/cran/mmetrics
+* URL: https://github.com/y-bar/mmetrics
+* BugReports: https://github.com/y-bar/mmetrics/issues
+* Date/Publication: 2019-07-26 08:50:02 UTC
+* Number of recursive dependencies: 96
+
+Run `cloud_details(, "mmetrics")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ]
+ 1. Error: summarize one key (@test-mmetrics.R#16)
+ 2. Error: summarize two keys (@test-mmetrics.R#21)
+ 3. Error: summarize all (@test-mmetrics.R#26)
+ 4. Error: mutate one key (@test-mmetrics.R#31)
+ 5. Error: mutate two keys (@test-mmetrics.R#36)
+ 6. Error: mutate all with (@test-mmetrics.R#41)
+ 7. Failure: mutate with non summarize mode to evaluate ratio (@test-mmetrics.R#48)
+ 8. Failure: not evaluatable metrics must be removed without error (@test-mmetrics.R#55)
+ 9. Error: not evaluatable metrics must be removed without error (@test-mmetrics.R#63)
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
+## In both
+
+* checking dependencies in R code ... NOTE
+ ```
+ Namespaces in Imports field not imported from:
+ ‘magrittr’ ‘stringr’
+ All declared Imports should be used.
+ ```
+
+# neuropsychology
+
+
+
+* Version: 0.5.0
+* Source code: https://github.com/cran/neuropsychology
+* URL: https://github.com/neuropsychology/neuropsychology.R
+* BugReports: https://github.com/neuropsychology/neuropsychology.R/issues
+* Date/Publication: 2017-03-22 19:17:18 UTC
+* Number of recursive dependencies: 154
+
+Run `cloud_details(, "neuropsychology")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ ...
+ Error: Can't reconstruct data frame.
+ ✖ The `[` method for class must return a data frame.
+ ℹ It returned a .
Backtrace:
- █
+ █
+ 1. └─neuropsychology::describe(df)
+ 2. └─`%>%`(...)
+ 3. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
+ 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 6. └─neuropsychology:::`_fseq`(`_lhs`)
+ 7. └─magrittr::freduce(value, `_function_list`)
+ 8. ├─base::withVisible(function_list[[k]](value))
+ 9. └─function_list[[k]](value)
+ 10. ├─dplyr::transmute_(...)
+ 11. └─dplyr:::transmute_.default(...)
+ 12. ├─dplyr::transmute(.data, !!!dots)
+ 13. └─dplyr:::transmute.data.frame(.data, !!!dots)
+ 14. ├─dplyr::mutate(.data, ..., .keep = "none")
+ 15. └
Execution halted
```
## In both
-* checking installed package size ... NOTE
+* checking dependencies in R code ... NOTE
```
- installed size is 6.2Mb
- sub-directories of 1Mb or more:
- R 2.0Mb
- doc 3.0Mb
+ Namespaces in Imports field not imported from:
+ ‘htmlTable’ ‘lme4’ ‘stringi’
+ All declared Imports should be used.
```
# opentripplanner
@@ -1946,15 +2224,15 @@ Run `revdep_details(,"ngsReports")` for more info
* Date/Publication: 2020-04-14 17:20:03 UTC
* Number of recursive dependencies: 69
-Run `revdep_details(,"opentripplanner")` for more info
+Run `cloud_details(, "opentripplanner")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Content type 'application/octet-stream' length 126976 bytes (124 KB)
@@ -1992,7 +2270,7 @@ Run `revdep_details(,"opentripplanner")` for more info
* Date/Publication: 2020-05-27 10:00:03 UTC
* Number of recursive dependencies: 101
-Run `revdep_details(,"pammtools")` for more info
+Run `cloud_details(, "pammtools")` for more info
@@ -2021,18 +2299,18 @@ Run `revdep_details(,"pammtools")` for more info
Position: 3 Code: .add Docs: add
```
-# PAST
+# panelr
-* Version: 1.4.1
-* Source code: https://github.com/cran/PAST
-* URL: https://github.com/IGBB/past
-* BugReports: https://github.com/IGBB/past/issues
-* Date/Publication: 2020-04-30
-* Number of recursive dependencies: 97
+* Version: 0.7.2
+* Source code: https://github.com/cran/panelr
+* URL: https://panelr.jacob-long.com
+* BugReports: https://github.com/jacob-long/panelr
+* Date/Publication: 2020-03-08 22:10:02 UTC
+* Number of recursive dependencies: 169
-Run `revdep_details(,"PAST")` for more info
+Run `cloud_details(, "panelr")` for more info
@@ -2040,74 +2318,55 @@ Run `revdep_details(,"PAST")` for more info
* checking examples ... ERROR
```
- ...
- Error: Problem with `mutate()` input `..1`.
- ✖ Input `..1` must be a vector, not a `rlang_data_pronoun` object.
- ℹ Input `..1` is `.data`.
- Backtrace:
- █
- 1. ├─utils::example("load_GWAS_data")
- 2. │ └─base::source(...)
- 3. │ ├─base::withVisible(eval(ei, envir))
- 4. │ └─base::eval(ei, envir)
- 5. │ └─base::eval(ei, envir)
- 6. └─PAST::load_GWAS_data(demo_association_file, demo_effects_file) /var/folders/4b/hn4fq98s6810s4ccv2f9hm2h0000gn/T//Rtmpo6QVx8/Rex350b4cf16ce3:11:0
- 7. └─`%>%`(...)
- 8. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
- 9. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 10. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 11. └─PAST:::`_fseq`(`_lhs`)
- 12. └─magrittr::freduce(value, `_function_list`)
- 13. └─function_list[[i]](value)
- 14. ├─dplyr::mutate(...)
- 15. └─dplyr:::mutate.data.frame(...)
+ Running examples in ‘panelr-Ex.R’ failed
+ The error most likely occurred in:
+
+ > ### Name: are_varying
+ > ### Title: Check if variables are constant or variable over time.
+ > ### Aliases: are_varying
+ >
+ > ### ** Examples
+ >
+ >
+ > wages <- panel_data(WageData, id = id, wave = t)
+ Warning: The `add` argument of `group_by()` is deprecated as of dplyr 1.0.0.
+ Please use the `.add` argument instead.
+ This warning is displayed once every 8 hours.
+ Call `lifecycle::last_warnings()` to see where this warning was generated.
+ > wages %>% are_varying(occ, ind, fem, blk)
+ Error in if (get_wave(data) %in% dots) NULL else get_wave(data) :
+ argument is of length zero
+ Calls: %>% ... freduce -> withVisible -> -> are_varying
Execution halted
```
-## In both
-
-* checking whether package ‘PAST’ can be installed ... WARNING
+* checking tests ... ERROR
```
- Found the following significant warnings:
- Warning: replacing previous import ‘S4Vectors::union’ by ‘dplyr::union’ when loading ‘PAST’
- Warning: replacing previous import ‘S4Vectors::intersect’ by ‘dplyr::intersect’ when loading ‘PAST’
- Warning: replacing previous import ‘S4Vectors::setdiff’ by ‘dplyr::setdiff’ when loading ‘PAST’
- Warning: replacing previous import ‘S4Vectors::first’ by ‘dplyr::first’ when loading ‘PAST’
- Warning: replacing previous import ‘S4Vectors::setequal’ by ‘dplyr::setequal’ when loading ‘PAST’
- Warning: replacing previous import ‘S4Vectors::rename’ by ‘dplyr::rename’ when loading ‘PAST’
- Warning: replacing previous import ‘S4Vectors::tail’ by ‘utils::tail’ when loading ‘PAST’
- Warning: replacing previous import ‘S4Vectors::head’ by ‘utils::head’ when loading ‘PAST’
- Warning: replacing previous import ‘S4Vectors::complete.cases’ by ‘stats::complete.cases’ when loading ‘PAST’
- Warning: replacing previous import ‘S4Vectors::sd’ by ‘stats::sd’ when loading ‘PAST’
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PAST/new/PAST.Rcheck/00install.out’ for details.
- ```
-
-* checking Rd \usage sections ... WARNING
- ```
- Undocumented arguments in documentation object 'assign_SNPs_to_genes'
- ‘filter_type’
-
- Functions with \usage entries need to have the appropriate \alias
- entries, and all their arguments documented.
- The \usage entries must correspond to syntactically valid R code.
- See chapter ‘Writing R documentation files’ in the ‘Writing R
- Extensions’ manual.
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 22 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 17 ]
+ 1. Failure: dplyr functions return panel_data objects (@test-utils.R#29)
+ 2. Error: widen_panel works (@test-utils.R#46)
+ 3. Error: long_panel works (basic case) (@test-utils.R#72)
+ 4. Error: long_panel works (unbalanced data) (@test-utils.R#96)
+ 5. Error: long_panel works (unbalanced data, numeric waves not begin w/ 1) (@test-utils.R#120)
+ 6. Error: long_panel works (character periods) (@test-utils.R#146)
+ 7. Error: long_panel works (beginning label) (@test-utils.R#171)
+ 8. Error: long_panel works (beginning label/character periods) (@test-utils.R#198)
+ 9. Error: long_panel works (prefix and suffix/character periods) (@test-utils.R#225)
+ 1. ...
+
+ Error: testthat unit tests failed
+ Execution halted
```
-* checking R code for possible problems ... NOTE
+## In both
+
+* checking Rd cross-references ... NOTE
```
- assign_chunk: no visible binding for global variable ‘chromosome’
- assign_chunk: no visible global function definition for ‘IRanges’
- assign_chunk: no visible binding for global variable ‘position’
- assign_chunk: no visible binding for global variable ‘seqid’
- assign_chunk: no visible binding for global variable ‘Name’
- find_pathway_significance: no visible binding for global variable
- ‘gene_id’
- plot_pathways: no visible binding for global variable
- ‘running_enrichment_score’
- Undefined global functions or variables:
- IRanges Name chromosome gene_id position running_enrichment_score
- seqid
+ Package unavailable to check Rd xrefs: ‘AER’
```
# photosynthesis
@@ -2119,7 +2378,7 @@ Run `revdep_details(,"PAST")` for more info
* Date/Publication: 2019-05-09 15:10:03 UTC
* Number of recursive dependencies: 73
-Run `revdep_details(,"photosynthesis")` for more info
+Run `cloud_details(, "photosynthesis")` for more info
@@ -2170,7 +2429,7 @@ Run `revdep_details(,"photosynthesis")` for more info
* Date/Publication: 2020-05-15 08:47:17 UTC
* Number of recursive dependencies: 106
-Run `revdep_details(,"pmdplyr")` for more info
+Run `cloud_details(, "pmdplyr")` for more info
@@ -2202,9 +2461,9 @@ Run `revdep_details(,"pmdplyr")` for more info
Execution halted
```
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
ℹ The error occured in group 1: i = 1.
@@ -2220,7 +2479,7 @@ Run `revdep_details(,"pmdplyr")` for more info
21. dplyr:::stop_mutate_recycle_incompatible_size(e, index = i, dots = dots)
22. dplyr:::stop_dplyr(...)
- Error: C stack usage 7971360 is too close to the limit
+ Error: C stack usage 7971332 is too close to the limit
Execution halted
```
@@ -2232,6 +2491,101 @@ Run `revdep_details(,"pmdplyr")` for more info
See section 'Cross-references' in the 'Writing R Extensions' manual.
```
+# ptstem
+
+
+
+* Version: 0.0.7
+* Source code: https://github.com/cran/ptstem
+* URL: https://github.com/dfalbel/ptstem
+* Date/Publication: 2020-05-12 23:40:03 UTC
+* Number of recursive dependencies: 63
+
+Run `cloud_details(, "ptstem")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ y[4]: "gostou"
+
+ x[5]: "gostaram"
+ y[5]: "gostou"
+
+ x[6]: "gostaram"
+ y[6]: "gostou"
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 17 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
+ 1. Failure: Stemming Hunspell Works (@test-ptstem.R#15)
+ 2. Failure: Stemming Hunspell Works (@test-ptstem.R#19)
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
+## In both
+
+* checking installed package size ... NOTE
+ ```
+ installed size is 5.3Mb
+ sub-directories of 1Mb or more:
+ dict 5.1Mb
+ ```
+
+# purrrogress
+
+
+
+* Version: 0.1.1
+* Source code: https://github.com/cran/purrrogress
+* URL: https://github.com/halpo/purrrogress
+* BugReports: https://github.com/halpo/purrrogress/issues
+* Date/Publication: 2019-07-22 21:10:08 UTC
+* Number of recursive dependencies: 48
+
+Run `cloud_details(, "purrrogress")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ > library(purrrogress)
+ >
+ > test_check("purrrogress")
+ ── 1. Error: with_progress_group_map (@group_map.R#56) ────────────────────────
+ object '.tbl' not found
+ Backtrace:
+ 1. dplyr::group_map(...)
+ 13. dplyr::count(.tbl)
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 224 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ]
+ 1. Error: with_progress_group_map (@group_map.R#56)
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
+## In both
+
+* checking dependencies in R code ... NOTE
+ ```
+ Namespaces in Imports field not imported from:
+ ‘R6’ ‘hms’
+ All declared Imports should be used.
+ ```
+
# rabhit
@@ -2243,7 +2597,7 @@ Run `revdep_details(,"pmdplyr")` for more info
* Date/Publication: 2020-01-29 20:20:02 UTC
* Number of recursive dependencies: 109
-Run `revdep_details(,"rabhit")` for more info
+Run `cloud_details(, "rabhit")` for more info
@@ -2275,102 +2629,84 @@ Run `revdep_details(,"rabhit")` for more info
Execution halted
```
-# Rariant
+# radiant.data
-* Version: 1.24.0
-* Source code: https://github.com/cran/Rariant
-* URL: https://github.com/juliangehring/Rariant
-* BugReports: https://support.bioconductor.org
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 167
+* Version: 1.3.4
+* Source code: https://github.com/cran/radiant.data
+* URL: https://github.com/radiant-rstats/radiant.data, https://radiant-rstats.github.io/radiant.data, https://radiant-rstats.github.io/docs
+* BugReports: https://github.com/radiant-rstats/radiant.data/issues
+* Date/Publication: 2020-03-23 15:50:05 UTC
+* Number of recursive dependencies: 144
-Run `revdep_details(,"Rariant")` for more info
+Run `cloud_details(, "radiant.data")` for more info
## Newly broken
-* checking whether package ‘Rariant’ can be installed ... ERROR
+* checking tests ... ERROR
```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Rariant/new/Rariant.Rcheck/00install.out’ for details.
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ ── 1. Failure: transform ts (@test_funs.R#166) ────────────────────────────────
+ dat$mpg not equal to ts(mtcars$mpg, start = c(1971, 1), frequency = 52).
+ Classes differ: numeric is not ts
+
+ ── 2. Failure: transform ts (@test_funs.R#167) ────────────────────────────────
+ dat$cyl not equal to ts(mtcars$cyl, start = c(1971, 1), frequency = 52).
+ Classes differ: numeric is not ts
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 32 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ]
+ 1. Failure: transform ts (@test_funs.R#166)
+ 2. Failure: transform ts (@test_funs.R#167)
+
+ Error: testthat unit tests failed
+ Execution halted
```
-## Newly fixed
+# rainette
-* checking examples ... WARNING
- ```
- Found the following significant warnings:
-
- Warning: 'rbind_all' is deprecated.
- Deprecated functions may be defunct as soon as of the next release of
- R.
- See ?Deprecated.
- ```
+
-* checking installed package size ... NOTE
- ```
- installed size is 7.7Mb
- sub-directories of 1Mb or more:
- doc 2.2Mb
- extdata 5.2Mb
- ```
+* Version: 0.1.1
+* Source code: https://github.com/cran/rainette
+* URL: https://juba.github.io/rainette/
+* BugReports: https://github.com/juba/rainette/issues
+* Date/Publication: 2020-05-09 12:00:03 UTC
+* Number of recursive dependencies: 155
+
+Run `cloud_details(, "rainette")` for more info
-* checking R code for possible problems ... NOTE
+
+
+## Newly broken
+
+* checking tests ... ERROR
```
- tallyBamRegion: no visible global function definition for 'PileupParam'
- tallyBamRegion: no visible global function definition for
- 'ScanBamParam'
- tallyBamRegion: no visible global function definition for 'pileup'
- Undefined global functions or variables:
- PileupParam ScanBamParam pileup
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ 3. rainette:::filter_crosstab(...)
+ 3. dplyr::filter(., chi2 > min_chi2, n_both > min_members)
+ 3. dplyr::select(., g1, g2, level1, level2, n_both, chi2)
+ 10. dplyr::mutate(...)
+ 13. dplyr:::mutate_cols(.data, ...)
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 106 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 2 ]
+ 1. Error: rainette2_complete_groups (@test_cutree.R#28)
+ 2. Error: (unknown) (@test_rainette2.R#12)
+
+ Error: testthat unit tests failed
+ In addition: Warning message:
+ In for (elt in name) { : closing unused connection 4 (doesnt/exist.txtt)
+ Execution halted
```
-* checking installed files from ‘inst/doc’ ... NOTE
- ```
- The following files should probably not be installed:
- ‘rariant-inspect-ci.png’, ‘rariant-inspect-shift.png’
-
- Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
- or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘Rariant’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object 'rbind_all' is not exported by 'namespace:dplyr'
-Execution halted
-ERROR: lazy loading failed for package ‘Rariant’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Rariant/new/Rariant.Rcheck/Rariant’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘Rariant’ ...
-** using staged installation
-** R
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (Rariant)
-
-```
# ratPASTA
@@ -2382,15 +2718,15 @@ ERROR: lazy loading failed for package ‘Rariant’
* Date/Publication: 2020-04-28 11:40:02 UTC
* Number of recursive dependencies: 118
-Run `revdep_details(,"ratPASTA")` for more info
+Run `cloud_details(, "ratPASTA")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Attributes: < Length mismatch: comparison on first 2 components >
@@ -2427,15 +2763,15 @@ Run `revdep_details(,"ratPASTA")` for more info
* Date/Publication: 2016-07-30 18:53:27
* Number of recursive dependencies: 61
-Run `revdep_details(,"RCMIP5")` for more info
+Run `cloud_details(, "RCMIP5")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Component 4: target is logical, current is numeric
@@ -2455,6 +2791,96 @@ Run `revdep_details(,"RCMIP5")` for more info
Execution halted
```
+# rcv
+
+
+
+* Version: 0.2.1
+* Source code: https://github.com/cran/rcv
+* URL: https://github.com/ds-elections/rcv
+* BugReports: https://github.com/ds-elections/rcv/issues
+* Date/Publication: 2017-08-11 08:11:33 UTC
+* Number of recursive dependencies: 46
+
+Run `cloud_details(, "rcv")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ ...
+ Error: Problem with `summarise()` input `total`.
+ ✖ could not find function "n"
+ ℹ Input `total` is `n()`.
+ ℹ The error occured in group 1: candidate = "BEN MATRANGA".
+ Backtrace:
+ █
+ 1. └─rcv::rcv_tally(image = sf_bos_clean, rcvcontest = "Board of Supervisors, District 7")
+ 2. └─`%>%`(...)
+ 3. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
+ 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 6. └─rcv:::`_fseq`(`_lhs`)
+ 7. └─magrittr::freduce(value, `_function_list`)
+ 8. └─function_list[[i]](value)
+ 9. ├─dplyr::summarise(., total = n())
+ 10. └─dplyr:::summarise.grouped_df(., total = n())
+ 11. └─dplyr:::summarise_cols(.data, ...)
+
+ Backtrace:
+ █
+ Execution halted
+ ```
+
+## In both
+
+* checking data for non-ASCII characters ... NOTE
+ ```
+ Note: found 6543 marked UTF-8 strings
+ ```
+
+# RNeXML
+
+
+
+* Version: 2.4.4
+* Source code: https://github.com/cran/RNeXML
+* URL: https://docs.ropensci.org/RNeXML, https://github.com/ropensci/RNeXML
+* BugReports: https://github.com/ropensci/RNeXML/issues
+* Date/Publication: 2020-05-10 07:20:06 UTC
+* Number of recursive dependencies: 135
+
+Run `cloud_details(, "RNeXML")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘spelling.R’
+ Running ‘test-all.R’
+ Running the tests in ‘tests/test-all.R’ failed.
+ Last 13 lines of output:
+ Loading required package: ape
+ ── 1. Failure: coalesce_() works correctly (@test_01_utils.R#129) ─────────────
+ `dplyr::coalesce(dta$col1, dta$col3, last)` did not throw an error.
+
+ ── 2. Failure: coalesce_() works correctly (@test_01_utils.R#130) ─────────────
+ `dplyr::coalesce(dta$col3, last)` did not throw an error.
+
+ Done simulation(s).
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 300 | SKIPPED: 45 | WARNINGS: 2 | FAILED: 2 ]
+ 1. Failure: coalesce_() works correctly (@test_01_utils.R#129)
+ 2. Failure: coalesce_() works correctly (@test_01_utils.R#130)
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
# rsample
@@ -2466,15 +2892,15 @@ Run `revdep_details(,"RCMIP5")` for more info
* Date/Publication: 2020-03-31 19:50:02 UTC
* Number of recursive dependencies: 98
-Run `revdep_details(,"rsample")` for more info
+Run `cloud_details(, "rsample")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Attributes: < Component 2: Numeric: lengths (40, 1) differ >
@@ -2494,6 +2920,97 @@ Run `revdep_details(,"rsample")` for more info
Execution halted
```
+# RTL
+
+
+
+* Version: 0.1.1
+* Source code: https://github.com/cran/RTL
+* URL: https://github.com/risktoollib/RTL
+* Date/Publication: 2020-02-23 18:50:02 UTC
+* Number of recursive dependencies: 136
+
+Run `cloud_details(, "RTL")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ Running examples in ‘RTL-Ex.R’ failed
+ The error most likely occurred in:
+
+ > ### Name: chart_zscore
+ > ### Title: 'chart_zscore'
+ > ### Aliases: chart_zscore
+ >
+ > ### ** Examples
+ >
+ > chart_zscore(df = ng_storage, title = "NG Storage Z Score",
+ + per = "yearweek", output = "stl", chart = "seasons")
+ Warning: The `add` argument of `group_by()` is deprecated as of dplyr 1.0.0.
+ Please use the `.add` argument instead.
+ This warning is displayed once every 8 hours.
+ Call `lifecycle::last_warnings()` to see where this warning was generated.
+ Error in UseMethod("model") :
+ no applicable method for 'model' applied to an object of class "c('grouped_df', 'tbl_df', 'tbl', 'data.frame')"
+ Calls: chart_zscore ... eval -> _fseq -> freduce -> ->
+ Execution halted
+ ```
+
+## In both
+
+* checking dependencies in R code ... NOTE
+ ```
+ Namespace in Imports field not imported from: ‘quantmod’
+ All declared Imports should be used.
+ ```
+
+* checking data for non-ASCII characters ... NOTE
+ ```
+ Note: found 15456 marked UTF-8 strings
+ ```
+
+# rules
+
+
+
+* Version: 0.0.1
+* Source code: https://github.com/cran/rules
+* URL: https://github.com/tidymodels/rules, https://rules.tidymodels.org
+* Date/Publication: 2020-05-20 15:00:02 UTC
+* Number of recursive dependencies: 96
+
+Run `cloud_details(, "rules")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘spelling.R’
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ ── 7. Error: non-formula method ───────────────────────────────────────────────
+ object 'rf_m_pred' not found
+
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 55 | SKIPPED: 12 | WARNINGS: 4 | FAILED: 7 ]
+ 1. Error: mulit-predict
+ 2. Failure: formula method (@test-rule-fit-binomial.R#52)
+ 3. Failure: formula method (@test-rule-fit-binomial.R#56)
+ 4. Error: formula method
+ 5. Failure: non-formula method (@test-rule-fit-binomial.R#131)
+ 6. Failure: non-formula method (@test-rule-fit-binomial.R#135)
+ 7. Error: non-formula method
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
# saotd
@@ -2504,32 +3021,27 @@ Run `revdep_details(,"rsample")` for more info
* Date/Publication: 2019-04-04 16:30:03 UTC
* Number of recursive dependencies: 118
-Run `revdep_details(,"saotd")` for more info
+Run `cloud_details(, "saotd")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- ── 5. Failure: unigrams are computed properly (@test_unigram.R#18) ────────────
- saotd::unigram(DataFrame = test_unigram_df) not equal to `correct_unigram_df`.
+ Complete output:
+ > library(testthat)
+ > library(saotd)
+ >
+ > test_check("saotd")
+ ── 1. Failure: bigrams are computed properly (@test_bigram.R#19) ──────────────
+ saotd::bigram(DataFrame = test_bigram_df) not equal to `correct_bigram_df`.
Attributes: < Component "class": Lengths (1, 3) differ (string compare on first 1) >
Attributes: < Component "class": 1 string mismatch >
- ══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 63 | SKIPPED: 0 | WARNINGS: 7 | FAILED: 5 ]
- 1. Failure: bigrams are computed properly (@test_bigram.R#19)
- 2. Error: (unknown) (@test_number_topics.R#12)
- 3. Failure: Trigrams are computed properly (@test_trigram.R#21)
- 4. Error: (unknown) (@test_tweet_topics.R#12)
- 5. Failure: unigrams are computed properly (@test_unigram.R#18)
-
- Error: testthat unit tests failed
- Execution halted
+ Killed
```
## In both
@@ -2539,70 +3051,6 @@ Run `revdep_details(,"saotd")` for more info
Note: found 826 marked UTF-8 strings
```
-# SCORPIUS
-
-
-
-* Version: 1.0.6
-* Source code: https://github.com/cran/SCORPIUS
-* URL: http://github.com/rcannood/SCORPIUS
-* BugReports: https://github.com/rcannood/SCORPIUS/issues
-* Date/Publication: 2020-03-16 16:20:02 UTC
-* Number of recursive dependencies: 116
-
-Run `revdep_details(,"SCORPIUS")` for more info
-
-
-
-## Newly broken
-
-* checking whether package ‘SCORPIUS’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCORPIUS/new/SCORPIUS.Rcheck/00install.out’ for details.
- ```
-
-## Installation
-
-### Devel
-
-```
-* installing *source* package ‘SCORPIUS’ ...
-** package ‘SCORPIUS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-Error: object ‘as.tbl_cube’ is not exported by 'namespace:dplyr'
-Execution halted
-ERROR: lazy loading failed for package ‘SCORPIUS’
-* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCORPIUS/new/SCORPIUS.Rcheck/SCORPIUS’
-
-```
-### CRAN
-
-```
-* installing *source* package ‘SCORPIUS’ ...
-** package ‘SCORPIUS’ successfully unpacked and MD5 sums checked
-** using staged installation
-** R
-** data
-*** moving datasets to lazyload DB
-** inst
-** byte-compile and prepare package for lazy loading
-** help
-*** installing help indices
-*** copying figures
-** building package indices
-** installing vignettes
-** testing if installed package can be loaded from temporary location
-** testing if installed package can be loaded from final location
-** testing if installed package keeps a record of temporary installation path
-* DONE (SCORPIUS)
-
-```
# sergeant
@@ -2614,7 +3062,7 @@ ERROR: lazy loading failed for package ‘SCORPIUS’
* Date/Publication: 2017-07-17 22:36:26 UTC
* Number of recursive dependencies: 63
-Run `revdep_details(,"sergeant")` for more info
+Run `cloud_details(, "sergeant")` for more info
@@ -2631,18 +3079,18 @@ Run `revdep_details(,"sergeant")` for more info
Extensions’ manual.
```
-# sevenbridges
+# sf
-* Version: 1.18.0
-* Source code: https://github.com/cran/sevenbridges
-* URL: https://www.sevenbridges.com, https://sbg.github.io/sevenbridges-r/, https://github.com/sbg/sevenbridges-r
-* BugReports: https://github.com/sbg/sevenbridges-r/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 63
+* Version: 0.9-3
+* Source code: https://github.com/cran/sf
+* URL: https://r-spatial.github.io/sf/, https://github.com/r-spatial/sf/
+* BugReports: https://github.com/r-spatial/sf/issues/
+* Date/Publication: 2020-05-04 17:40:02 UTC
+* Number of recursive dependencies: 145
-Run `revdep_details(,"sevenbridges")` for more info
+Run `cloud_details(, "sf")` for more info
@@ -2651,37 +3099,64 @@ Run `revdep_details(,"sevenbridges")` for more info
* checking examples ... ERROR
```
...
- >
- > f1 <- system.file("extdata/app", "flow_star.json", package = "sevenbridges")
- > f1 <- convert_app(f1)
- > # input matrix
- > f1$input_matrix()
- Error: Can't combine `..1$category` and `..4$category` .
- Backtrace:
- █
- 1. ├─f1$input_matrix()
- 2. │ ├─base::suppressWarnings(as(inputs, "data.frame"))
- 3. │ │ └─base::withCallingHandlers(...)
- 4. │ └─methods::as(inputs, "data.frame")
- 5. │ └─sevenbridges:::asMethod(object)
- 6. │ ├─base::do.call("bind_rows", lst)
- 7. │ └─dplyr::bind_rows(...)
- 8. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id)
- 9. └─vctrs::vec_default_ptype2(...)
- 10. └─vctrs::stop_incompatible_type(...)
- 11. └─vctrs:::stop_incompatible(...)
- 12. └─vctrs:::stop_vctrs(...)
- Execution halted
+ geometry type: POINT
+ dimension: XY
+ bbox: xmin: 0 ymin: 1 xmax: 0 ymax: 1
+ CRS: EPSG:3857
+ a a.1 a.2 geom geom.1 geom.2
+ 1 1 1 4 POINT (0 1) LINESTRING (1 3, 2 4) MULTILINESTRING ((1 3, 2 4))
+ > if (require(dplyr))
+ + dplyr::bind_cols(a,b)
+ Loading required package: dplyr
+
+ Attaching package: ‘dplyr’
+
+ The following objects are masked from ‘package:stats’:
+
+ filter, lag
+
+ The following objects are masked from ‘package:base’:
+
+ intersect, setdiff, setequal, union
+
+ New names:
+ ```
+
+* checking tests ... ERROR
+ ```
+ ...
+ < CRS: GEOGCS["NAD27",DATUM["North_American_Datum_1927",SPHEROID["Clarke 1866",6378206.4,294.9786982138982,AUTHORITY["EPSG","7008"]],AUTHORITY["EPSG","6267"]],PRIMEM["Greenwich",0],UNIT["degree",0.0174532925199433],AUTHORITY["EPSG","4267"]]
+ ---
+ > geographic CRS: NAD27
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ 7. vctrs:::stop_incompatible(...)
+ 8. vctrs:::stop_vctrs(...)
+
+ Failed to create feature 1 in x
+ Failed to create feature 1 in x
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 702 | SKIPPED: 55 | WARNINGS: 6 | FAILED: 5 ]
+ 1. Failure: filter to sfc works (@test_tidy.R#17)
+ 2. Failure: filter to sfc works (@test_tidy.R#19)
+ 3. Failure: `precision` and `crs` attributes of `sfc` vectors are combined (@test_vctrs.R#48)
+ 4. Failure: `precision` and `crs` attributes of `sfc` vectors are combined (@test_vctrs.R#51)
+ 5. Error: `sfc` vectors have a common type (@test_vctrs.R#59)
+
+ Error: testthat unit tests failed
+ Execution halted
```
## In both
* checking installed package size ... NOTE
```
- installed size is 12.3Mb
+ installed size is 26.7Mb
sub-directories of 1Mb or more:
- R 2.0Mb
- doc 9.5Mb
+ doc 11.9Mb
+ libs 10.3Mb
+ sqlite 1.5Mb
```
# simglm
@@ -2693,15 +3168,15 @@ Run `revdep_details(,"sevenbridges")` for more info
* Date/Publication: 2019-05-31 17:10:03 UTC
* Number of recursive dependencies: 90
-Run `revdep_details(,"simglm")` for more info
+Run `cloud_details(, "simglm")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── 1. Failure: interupt TS (@test_knots.r#69) ─────────────────────────────────
@@ -2713,7 +3188,7 @@ Run `revdep_details(,"simglm")` for more info
Numeric: lengths (2, 0) differ
══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 129 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 2 ]
+ [ OK: 129 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 2 ]
1. Failure: interupt TS (@test_knots.r#69)
2. Failure: interupt TS (@test_knots.r#96)
@@ -2721,6 +3196,58 @@ Run `revdep_details(,"simglm")` for more info
Execution halted
```
+# simplevis
+
+
+
+* Version: 1.1.3
+* Source code: https://github.com/cran/simplevis
+* URL: https://statisticsnz.github.io/simplevis, https://github.com/statisticsnz/simplevis
+* BugReports: https://github.com/statisticsNZ/simplevis/issues
+* Date/Publication: 2020-05-14 19:30:02 UTC
+* Number of recursive dependencies: 118
+
+Run `cloud_details(, "simplevis")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ ...
+ 2 02 Auckland Region (((175.44 -36.26242, 175.4375 -36.25857, 175.4…
+ 3 03 Waikato Region (((174.7847 -38.13349, 174.7865 -38.13396, 174…
+ 4 04 Bay of Plenty Re… (((176.1715 -37.68738, 176.1707 -37.68717, 176…
+ 5 05 Gisborne Region (((177.876 -38.0767, 177.9723 -37.84501, 178.0…
+ 6 06 Hawke's Bay Regi… (((177.9018 -39.07296, 177.908 -39.07566, 177.…
+ 7 07 Taranaki Region (((174.2067 -39.59022, 174.2015 -39.58808, 174…
+ 8 08 Manawatu-Wanganu… (((175.5606 -38.49023, 175.5655 -38.49453, 175…
+ 9 09 Wellington Region (((174.8099 -41.34305, 174.8109 -41.34476, 174…
+ 10 12 West Coast Region (((170.3303 -43.09979, 170.3268 -43.10285, 170…
+ 11 13 Canterbury Region (((172.6917 -42.10662, 172.7017 -42.1013, 172.…
+ 12 14 Otago Region (((169.7051 -46.47425, 169.7035 -46.47368, 169…
+ 13 15 Southland Region (((167.7202 -47.04975, 167.7135 -47.04868, 167…
+ 14 16 Tasman Region (((172.4941 -41.04557, 172.4961 -41.04071, 172…
+ 15 17 Nelson Region (((173.3167 -41.24106, 173.3154 -41.23618, 173…
+ 16 18 Marlborough Regi… (((173.3044 -41.507, 173.2889 -41.49327, 173.2…
+ >
+ > ggplot_sf(nz_region)
+ Error in UseMethod("st_agr<-") :
+ no applicable method for 'st_agr<-' applied to an object of class "c('grouped_df', 'tbl_df', 'tbl', 'data.frame')"
+ Calls: ggplot_sf ... fortify.grouped_df -> $<- -> $<-.sf -> [[<- -> [[<-.sf -> st_agr<-
+ Execution halted
+ ```
+
+## In both
+
+* checking dependencies in R code ... NOTE
+ ```
+ Namespaces in Imports field not imported from:
+ ‘DT’ ‘readr’ ‘rmarkdown’ ‘shinycssloaders’
+ All declared Imports should be used.
+ ```
+
# SIRItoGTFS
@@ -2732,7 +3259,7 @@ Run `revdep_details(,"simglm")` for more info
* Date/Publication: 2018-05-21 18:36:10 UTC
* Number of recursive dependencies: 32
-Run `revdep_details(,"SIRItoGTFS")` for more info
+Run `cloud_details(, "SIRItoGTFS")` for more info
@@ -2764,6 +3291,49 @@ Run `revdep_details(,"SIRItoGTFS")` for more info
Execution halted
```
+# sistec
+
+
+
+* Version: 0.0.2
+* Source code: https://github.com/cran/sistec
+* URL: https://github.com/r-ifpe/sistec
+* BugReports: https://github.com/r-ifpe/sistec/issues
+* Date/Publication: 2020-05-11 12:50:03 UTC
+* Number of recursive dependencies: 50
+
+Run `cloud_details(, "sistec")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ ...
+ + package = "sistec"))
+ >
+ > compare_sistec(sistec, qacademico)
+ Error: Input must be a vector, not a `data.frame/sistec_data_frame` object.
+ Backtrace:
+ █
+ 1. ├─sistec::compare_sistec(sistec, qacademico)
+ 2. ├─sistec:::compare_sistec.qacademico_data_frame(sistec, qacademico)
+ 3. │ └─sistec:::compare_sistec_qacademico(sistec, student_registration)
+ 4. │ └─sistec:::filter_cpf_sistec(sistec)
+ 5. │ ├─dplyr::filter(x, !!sym("NU_CPF") == "")
+ 6. │ └─dplyr:::filter.data.frame(x, !!sym("NU_CPF") == "")
+ 7. │ ├─dplyr::dplyr_row_slice(.data, loc, preserve = .preserve)
+ 8. │ └─dplyr:::dplyr_row_slice.data.frame(.data, loc, preserve = .preserve)
+ 9. │ ├─dplyr::dplyr_reconstruct(vec_slice(data, i), data)
+ 10. │ │ └─dplyr:::dplyr_new_data_frame(data)
+ 11. │ │ ├─row.names %||% .row_names_info(x, type = 0L)
+ 12. │ │ └─base::.row_names_info(x, type = 0L)
+ 13. │ └─vctrs::vec_slice(data, i)
+ 14. └─vctrs::
+ Execution halted
+ ```
+
# skynet
@@ -2775,15 +3345,15 @@ Run `revdep_details(,"SIRItoGTFS")` for more info
* Date/Publication: 2018-12-12 10:20:03 UTC
* Number of recursive dependencies: 84
-Run `revdep_details(,"skynet")` for more info
+Run `cloud_details(, "skynet")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
> library(testthat)
@@ -2821,18 +3391,18 @@ Run `revdep_details(,"skynet")` for more info
* Date/Publication: 2019-09-20 04:50:02 UTC
* Number of recursive dependencies: 64
-Run `revdep_details(,"strapgod")` for more info
+Run `cloud_details(, "strapgod")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
- Component 4: Mean relative difference: 0.6802195
+ Component 4: Mean relative difference: 0.6797548
Component 5: Attributes: < target is NULL, current is list >
Component 5: target is numeric, current is factor
@@ -2858,7 +3428,7 @@ Run `revdep_details(,"strapgod")` for more info
* Date/Publication: 2020-03-20 13:50:06 UTC
* Number of recursive dependencies: 124
-Run `revdep_details(,"StratigrapheR")` for more info
+Run `cloud_details(, "StratigrapheR")` for more info
@@ -2890,6 +3460,56 @@ Run `revdep_details(,"StratigrapheR")` for more info
Execution halted
```
+# sugarbag
+
+
+
+* Version: 0.1.2
+* Source code: https://github.com/cran/sugarbag
+* URL: https://srkobakian.github.io/sugarbag/, https://github.com/srkobakian/sugarbag
+* Date/Publication: 2020-01-08 20:40:02 UTC
+* Number of recursive dependencies: 108
+
+Run `cloud_details(, "sugarbag")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ ...
+ >
+ >
+ > data(tas_sa2)
+ > data(capital_cities)
+ > hexmap <- create_hexmap(
+ + shp = tas_lga,
+ + sf_id = "LGA_CODE16",
+ + focal_points = capital_cities, verbose = TRUE
+ + )
+ Warning in st_centroid.sf(., of_largest_polygon = largest) :
+ st_centroid assumes attributes are constant over geometries of x
+ Warning in st_centroid.sfc(st_geometry(x), of_largest_polygon = of_largest_polygon) :
+ st_centroid does not give correct centroids for longitude/latitude data
+ Warning: st_crs<- : replacing crs does not reproject data; use st_transform for that
+ Warning: st_crs<- : replacing crs does not reproject data; use st_transform for that
+ Buffer set to 1.224 degrees.
+ Converted hexagon size to 0.1205 degrees.
+ Filter set to 1.2047 degrees.
+ Finding closest point in focal_points data set.
+ Closest points found.
+ New names:
+ ```
+
+## In both
+
+* checking dependencies in R code ... NOTE
+ ```
+ Namespace in Imports field not imported from: ‘lwgeom’
+ All declared Imports should be used.
+ ```
+
# tidyjson
@@ -2901,7 +3521,7 @@ Run `revdep_details(,"StratigrapheR")` for more info
* Date/Publication: 2020-05-28 13:40:02 UTC
* Number of recursive dependencies: 89
-Run `revdep_details(,"tidyjson")` for more info
+Run `cloud_details(, "tidyjson")` for more info
@@ -2933,9 +3553,9 @@ Run `revdep_details(,"tidyjson")` for more info
Execution halted
```
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
16. dplyr:::mutate.data.frame(.data, ..., .keep = "none")
@@ -2966,15 +3586,15 @@ Run `revdep_details(,"tidyjson")` for more info
* Date/Publication: 2020-03-07 16:00:02 UTC
* Number of recursive dependencies: 60
-Run `revdep_details(,"tidyRSS")` for more info
+Run `cloud_details(, "tidyRSS")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
── 2. Error: df is cleaned properly (@test_general.R#84) ──────────────────────
@@ -3003,7 +3623,7 @@ Run `revdep_details(,"tidyRSS")` for more info
* Date/Publication: 2019-09-12 07:20:02 UTC
* Number of recursive dependencies: 29
-Run `revdep_details(,"tidystats")` for more info
+Run `cloud_details(, "tidystats")` for more info
@@ -3012,6 +3632,7 @@ Run `revdep_details(,"tidystats")` for more info
* checking examples ... ERROR
```
...
+ + group_by(source) %>%
+ describe_data(response)
Error: `x` must be a vector, not a `grouped_df/tbl_df/tbl/data.frame/tidystats_descriptives` object.
Backtrace:
@@ -3026,12 +3647,11 @@ Run `revdep_details(,"tidystats")` for more info
8. ├─base::as.data.frame(head(x, n))
9. ├─utils::head(x, n)
10. └─utils:::head.data.frame(x, n)
- 11. ├─base::do.call("[", args)
- 12. ├─x[1:2, , drop = FALSE]
- 13. └─dplyr:::`[.grouped_df`(x, 1:2, , drop = FALSE)
- 14. └─dplyr::grouped_df(out, groups, group_by_drop_default(x))
- 15. └─dplyr:::compute_groups(data, vars, drop = drop)
- 16.
+ 11. ├─x[seq_len(n), , drop = FALSE]
+ 12. └─dplyr:::`[.grouped_df`(x, seq_len(n), , drop = FALSE)
+ 13. └─dplyr::grouped_df(out, groups, group_by_drop_default(x))
+ 14. └─dplyr:::compute_groups(data, vars, drop = drop)
+ 15. ├─tibble::as_tib
Execution halted
```
@@ -3057,7 +3677,7 @@ Run `revdep_details(,"tidystats")` for more info
* Date/Publication: 2019-02-12 17:20:02 UTC
* Number of recursive dependencies: 36
-Run `revdep_details(,"tidystopwords")` for more info
+Run `cloud_details(, "tidystopwords")` for more info
@@ -3096,17 +3716,18 @@ Run `revdep_details(,"tidystopwords")` for more info
Note: found 229801 marked UTF-8 strings
```
-# timeOmics
+# timetk
* Version: 1.0.0
-* Source code: https://github.com/cran/timeOmics
-* BugReports: https://github.com/abodein/timeOmics/issues
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 121
+* Source code: https://github.com/cran/timetk
+* URL: https://github.com/business-science/timetk
+* BugReports: https://github.com/business-science/timetk/issues
+* Date/Publication: 2020-04-19 17:50:02 UTC
+* Number of recursive dependencies: 151
-Run `revdep_details(,"timeOmics")` for more info
+Run `cloud_details(, "timetk")` for more info
@@ -3115,191 +3736,41 @@ Run `revdep_details(,"timeOmics")` for more info
* checking examples ... ERROR
```
...
- > block.pls.cluster <- getCluster(demo$block.pls)
- Error: Join columns must be unique.
- ✖ Problem at position 2.
+ Error: Problem with `mutate()` input `nested.col`.
+ ✖ Can't recycle `..1` (size 169) to match `..2` (size 0).
+ ℹ Input `nested.col` is `purrr::map(...)`.
+ ℹ The error occured in group 1: id = "H10".
Backtrace:
█
- 1. ├─timeOmics::getCluster(demo$block.pls)
- 2. └─timeOmics:::getCluster.block.pls(demo$block.pls)
- 3. └─`%>%`(...)
- 4. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
- 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 6. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
- 7. └─timeOmics:::`_fseq`(`_lhs`)
- 8. └─magrittr::freduce(value, `_function_list`)
- 9. └─function_list[[i]](value)
- 10. ├─dplyr::left_join(., block.info, by = c("molecule", "molecule"))
- 11. └─dplyr:::left_join.data.frame(...)
- 12. └─dplyr:::join_mutate(...)
- 13. └─dplyr:::join_cols(...)
- 14. └─dplyr:::standardise_join_by(by, x_names = x_names, y_names = y_names)
- 15. └─dplyr:::check_join_vars(by$x, x_names)
- Execution halted
- ```
-
-* checking tests ...
- ```
- ERROR
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- ══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 174 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 17 ]
- 1. Error: getCluster works and return a valid output (@test-getCluster.R#19)
- 2. Error: getNcomp works (@test-getNcomp.R#57)
- 3. Error: getNcomp plot works (@test-getNcomp.R#69)
- 4. Error: getSilhouette works (@test-getSilhouette.R#20)
- 5. Error: lmms.filter.lines works (@test-lmms.filter.lines.R#57)
- 6. Failure: plotLong failed on invalid - time (@test-plotLong.R#41)
- 7. Failure: plotLong failed on invalid - time (@test-plotLong.R#42)
- 8. Failure: plotLong failed on invalid - time (@test-plotLong.R#43)
- 9. Failure: plotLong failed on invalid - time (@test-plotLong.R#44)
- 1. ...
-
- Error: testthat unit tests failed
- Execution halted
- ```
-
-## In both
-
-* checking for hidden files and directories ... NOTE
- ```
- Found the following hidden files and directories:
- .travis.yml
- These were most likely included in error. See section ‘Package
- structure’ in the ‘Writing R Extensions’ manual.
- ```
-
-* checking dependencies in R code ... NOTE
- ```
- Package in Depends field not imported from: ‘lmms’
- These packages need to be imported from (in the NAMESPACE file)
- for when this namespace is loaded but not attached.
- ```
-
-* checking R code for possible problems ... NOTE
- ```
- ...
- tune.silhouette.get_slopes: no visible binding for global variable
- ‘Z_score.neg’
- tuneCluster.block.spls: no visible binding for global variable
- ‘silhouette.coef’
- tuneCluster.spca: no visible binding for global variable
- ‘silhouette.coef’
- tuneCluster.spls: no visible binding for global variable
- ‘silhouette.coef’
- unscale: no visible global function definition for ‘is’
- Undefined global functions or variables:
- . BP.test MSE Pval.dir Pval.neg Pval.pos Pval.value Pvalue X Y_hat
- Y_i Z_score.neg Z_score.pos block cluster cluster1 cluster2 comp
- contrib contrib.max cor destination direction distance_from_origin
- error feature feature1 feature2 insideout is median molecule na.omit
- ncomp origin pnorm sd silhouette.coef slope.neg slope.pos slot val
- value
- Consider adding
- importFrom("methods", "is", "slot")
- importFrom("stats", "cor", "median", "na.omit", "pnorm", "sd")
- to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
- contains 'methods').
- ```
-
-# TPP
-
-
-
-* Version: 3.16.0
-* Source code: https://github.com/cran/TPP
-* Date/Publication: 2020-04-27
-* Number of recursive dependencies: 95
-
-Run `revdep_details(,"TPP")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- ...
- Normalization successfully completed!
-
- Warning: `as.tbl()` is deprecated as of dplyr 1.0.0.
- Please use `tibble::as_tibble()` instead.
- This warning is displayed once every 8 hours.
- Call `lifecycle::last_warnings()` to see where this warning was generated.
- Fitting smoothing splines and AICc values for the following degrees of freedom: 3, 4, 5, 6, 7
- Fitting null models to 510 proteins (using 3 degrees of freedom)
- Fitting alternative models to 510 proteins (using 3 degrees of freedom)
- Fitting null models to 510 proteins (using 4 degrees of freedom)
- Fitting alternative models to 510 proteins (using 4 degrees of freedom)
- Fitting null models to 510 proteins (using 5 degrees of freedom)
- Fitting alternative models to 510 proteins (using 5 degrees of freedom)
- Fitting null models to 510 proteins (using 6 degrees of freedom)
- Fitting alternative models to 510 proteins (using 6 degrees of freedom)
- Fitting null models to 510 proteins (using 7 degrees of freedom)
- Fitting alternative models to 510 proteins (using 7 degrees of freedom)
- Error in { :
- task 1 failed - "Can't recycle input of size 510 to size 1020."
- Calls: analyzeTPPTR ... tpptrSplineFitAndTest -> tpptrFitSplines -> %dopar% ->
+ 1. └─`%>%`(...)
+ 2. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
+ 3. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 5. └─`_fseq`(`_lhs`)
+ 6. └─magrittr::freduce(value, `_function_list`)
+ 7. ├─base::withVisible(function_list[[k]](value))
+ 8. └─function_list[[k]](value)
+ 9. ├─timetk::plot_acf_diagnostics(...)
+ 10. └─timetk:::plot_acf_diagnostics.grouped_df(...)
+ 11. ├─timetk::tk_acf_diagnostics(...)
+ 12. └─timetk:::tk_acf_diagnostics.grouped_df(...)
+ 13. └─`%>%`(...)
+ 14. ├─base::withVisible(eval(quote(`_fseq`(`_
Execution halted
```
-* checking tests ...
- ```
- ERROR
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- ══ testthat results ═══════════════════════════════════════════════════════════
- [ OK: 167 | SKIPPED: 1 | WARNINGS: 255 | FAILED: 26 ]
- 1. Error: NPARC_allok (@test_analyzeTPPTR.R#14)
- 2. Error: NPARC_allok_output (@test_analyzeTPPTR.R#34)
- 3. Error: NPARC_allok_plot (@test_analyzeTPPTR.R#61)
- 4. Error: NPARC_allok_files (@test_analyzeTPPTR.R#94)
- 5. Error: (unknown) (@test_compute_spline_auc.R#12)
- 6. Error: (unknown) (@test_create_spline_plots.R#12)
- 7. Error: (unknown) (@test_evalSplineModel.R#12)
- 8. Error: (unknown) (@test_extract_fit_factors.R#12)
- 9. Error: (unknown) (@test_invoke_spline_prediction.R#11)
- 1. ...
-
- Error: testthat unit tests failed
- Execution halted
- ```
-
## In both
* checking installed package size ... NOTE
```
- installed size is 13.5Mb
+ installed size is 6.5Mb
sub-directories of 1Mb or more:
- data 1.9Mb
- example_data 8.0Mb
- test_data 1.9Mb
+ doc 5.1Mb
```
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘broom’
- All declared Imports should be used.
- Unexported objects imported by ':::' calls:
- ‘doParallel:::.options’ ‘mefa:::rep.data.frame’
- See the note in ?`:::` about the use of this operator.
- ```
-
-* checking R code for possible problems ... NOTE
+* checking data for non-ASCII characters ... NOTE
```
- File ‘TPP/R/TPP.R’:
- .onLoad calls:
- packageStartupMessage(msgText, "\n")
-
- See section ‘Good practice’ in '?.onAttach'.
-
- plot_fSta_distribution: no visible binding for global variable
- ‘..density..’
- plot_pVal_distribution: no visible binding for global variable
- ‘..density..’
- Undefined global functions or variables:
- ..density..
+ Note: found 2750 marked UTF-8 strings
```
# tree.bins
@@ -3311,15 +3782,15 @@ Run `revdep_details(,"TPP")` for more info
* Date/Publication: 2018-06-14 05:33:53 UTC
* Number of recursive dependencies: 69
-Run `revdep_details(,"tree.bins")` for more info
+Run `cloud_details(, "tree.bins")` for more info
## Newly broken
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Items of 'old' not found in column names: [Categories]. Consider skip_absent=TRUE.
@@ -3357,7 +3828,7 @@ Run `revdep_details(,"tree.bins")` for more info
* Date/Publication: 2019-07-25 22:50:02 UTC
* Number of recursive dependencies: 52
-Run `revdep_details(,"treeplyr")` for more info
+Run `cloud_details(, "treeplyr")` for more info
@@ -3389,6 +3860,79 @@ Run `revdep_details(,"treeplyr")` for more info
Execution halted
```
+# tsibble
+
+
+
+* Version: 0.8.6
+* Source code: https://github.com/cran/tsibble
+* URL: https://tsibble.tidyverts.org
+* BugReports: https://github.com/tidyverts/tsibble/issues
+* Date/Publication: 2020-01-31 06:20:11 UTC
+* Number of recursive dependencies: 93
+
+Run `cloud_details(, "tsibble")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ ...
+ + group_by_key() %>%
+ + fill_gaps(kilo = sum(kilo))
+ Error: `vars` must be a character vector.
+ Backtrace:
+ █
+ 1. └─harvest %>% group_by_key() %>% fill_gaps(kilo = sum(kilo))
+ 2. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env))
+ 3. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env)
+ 5. └─`_fseq`(`_lhs`)
+ 6. └─magrittr::freduce(value, `_function_list`)
+ 7. ├─base::withVisible(function_list[[k]](value))
+ 8. └─function_list[[k]](value)
+ 9. ├─tsibble::fill_gaps(., kilo = sum(kilo))
+ 10. └─tsibble:::fill_gaps.tbl_ts(., kilo = sum(kilo))
+ 11. ├─dplyr::left_join(gap_data, replaced_df, by = by_name)
+ 12. └─tsibble:::left_join.tbl_ts(gap_data, replaced_df, by = by_name)
+ 13. └─tsibble:::update_meta(...)
+ 14. └─tsibble:::retain_tsibble(new, key = key(old), index = index(old))
+ 15.
+ Execution halted
+ ```
+
+* checking tests ... ERROR
+ ```
+ Running ‘spelling.R’
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 545 | SKIPPED: 2 | WARNINGS: 4 | FAILED: 35 ]
+ 1. Failure: 4 day interval (@test-append.R#27)
+ 2. Error: (unknown) (@test-append.R#31)
+ 3. Error: (unknown) (@test-bind.R#11)
+ 4. Error: (unknown) (@test-dplyr.R#5)
+ 5. Error: (unknown) (@test-empty.R#32)
+ 6. Error: (unknown) (@test-gaps.R#93)
+ 7. Error: (unknown) (@test-groups.R#3)
+ 8. Error: From Date to year-week, year-month, year-quarter and year (@test-indexby.R#84)
+ 9. Failure: index_by() with group_by() (@test-indexby.R#106)
+ 1. ...
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
+## In both
+
+* checking Rd cross-references ... NOTE
+ ```
+ Packages unavailable to check Rd xrefs: ‘dtplyr’, ‘dbplyr’
+ ```
+
# vcfR
@@ -3399,7 +3943,7 @@ Run `revdep_details(,"treeplyr")` for more info
* Date/Publication: 2020-02-06 09:50:02 UTC
* Number of recursive dependencies: 111
-Run `revdep_details(,"vcfR")` for more info
+Run `cloud_details(, "vcfR")` for more info
@@ -3431,9 +3975,9 @@ Run `revdep_details(,"vcfR")` for more info
Execution halted
```
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
Backtrace:
@@ -3453,6 +3997,54 @@ Run `revdep_details(,"vcfR")` for more info
Execution halted
```
+## In both
+
+* checking installed package size ... NOTE
+ ```
+ installed size is 10.3Mb
+ sub-directories of 1Mb or more:
+ libs 8.4Mb
+ ```
+
+# vctrs
+
+
+
+* Version: 0.3.0
+* Source code: https://github.com/cran/vctrs
+* URL: https://vctrs.r-lib.org/
+* BugReports: https://github.com/r-lib/vctrs/issues
+* Date/Publication: 2020-05-11 23:20:02 UTC
+* Number of recursive dependencies: 68
+
+Run `cloud_details(, "vctrs")` for more info
+
+
+
+## Newly broken
+
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Last 13 lines of output:
+ ══ testthat results ═══════════════════════════════════════════════════════════
+ [ OK: 3578 | SKIPPED: 27 | WARNINGS: 0 | FAILED: 12 ]
+ 1. Error: grouped-df is proxied and restored (@test-type-dplyr.R#7)
+ 2. Error: can take the common type of grouped tibbles and tibbles (@test-type-dplyr.R#22)
+ 3. Error: the common type of grouped tibbles includes the union of grouping variables (@test-type-dplyr.R#36)
+ 4. Error: can cast to and from `grouped_df` (@test-type-dplyr.R#45)
+ 5. Error: casting to `grouped_df` doesn't require grouping variables (@test-type-dplyr.R#75)
+ 6. Error: casting to `grouped_df` handles `drop` (@test-type-dplyr.R#82)
+ 7. Error: can cbind grouped data frames (@test-type-dplyr.R#87)
+ 8. Error: rowwise can be proxied and restored (@test-type-dplyr.R#107)
+ 9. Error: can take the common type of rowwise tibbles and tibbles (@test-type-dplyr.R#116)
+ 1. ...
+
+ Error: testthat unit tests failed
+ Execution halted
+ ```
+
# vpc
@@ -3463,7 +4055,7 @@ Run `revdep_details(,"vcfR")` for more info
* Date/Publication: 2020-05-07 15:10:02 UTC
* Number of recursive dependencies: 70
-Run `revdep_details(,"vpc")` for more info
+Run `cloud_details(, "vpc")` for more info
@@ -3495,9 +4087,13 @@ Run `revdep_details(,"vpc")` for more info
New names:
```
-* checking tests ...
+* checking tests ... ERROR
```
- ERROR
+ ...
+ Running ‘test-softwaretype.R’
+ Running ‘test-strat-col-detection.R’
+ Running ‘test-vpc.R’
+ Running ‘test-vpc_cat.R’
Running the tests in ‘tests/test-vpc_cat.R’ failed.
Last 13 lines of output:
* `fact_perc(dv, lev[i])` -> `fact_perc(dv, lev[i])...3`
@@ -3505,14 +4101,14 @@ Run `revdep_details(,"vpc")` for more info
* bin -> bin...5
* ...
New names:
- * strat -> strat...1
- * bin -> bin...2
- * strat -> strat...4
- * bin -> bin...5
- * strat -> strat...7
+ * NA -> ...1
+ * NA -> ...2
+ * NA -> ...3
+ * NA -> ...4
+ * NA -> ...5
* ...
Error in names(x) <- value :
- 'names' attribute [6] must be the same length as the vector [4]
+ 'names' attribute [6] must be the same length as the vector [0]
Calls: vpc_cat -> colnames<-
Execution halted
```
@@ -3526,7 +4122,7 @@ Run `revdep_details(,"vpc")` for more info
* Date/Publication: 2020-05-18 17:50:02 UTC
* Number of recursive dependencies: 70
-Run `revdep_details(,"yamlet")` for more info
+Run `cloud_details(, "yamlet")` for more info