From 82aa9c2d835c8be823740e67f4c8fdb54b7c7111 Mon Sep 17 00:00:00 2001 From: Lionel Henry Date: Fri, 29 May 2020 10:45:34 +0200 Subject: [PATCH] Update dplyr revdeps --- revdep/dplyr/README.md | 347 +- revdep/dplyr/failures.md | 14208 ++----------------------------------- revdep/dplyr/problems.md | 3120 ++++---- 3 files changed, 2616 insertions(+), 15059 deletions(-) diff --git a/revdep/dplyr/README.md b/revdep/dplyr/README.md index 0b0d11a9c8..6f9ce7665d 100644 --- a/revdep/dplyr/README.md +++ b/revdep/dplyr/README.md @@ -1,245 +1,114 @@ -# Platform - -|field |value | -|:--------|:----------------------------| -|version |R version 4.0.0 (2020-04-24) | -|os |macOS Mojave 10.14.6 | -|system |x86_64, darwin17.0 | -|ui |X11 | -|language |(EN) | -|collate |en_US.UTF-8 | -|ctype |en_US.UTF-8 | -|tz |Europe/Paris | -|date |2020-05-28 | - -# Dependencies - -|package |old |new |Δ | -|:----------|:--------|:-----------|:--| -|dplyr |0.8.5 |0.8.99.9003 |* | -|assertthat |0.2.1 |0.2.1 | | -|BH |1.72.0-3 |NA |* | -|cli |2.0.2 |2.0.2 | | -|crayon |1.3.4 |1.3.4 | | -|digest |0.6.25 |0.6.25 | | -|ellipsis |0.3.1 |0.3.1 | | -|fansi |0.4.1 |0.4.1 | | -|generics |NA |0.0.2 |* | -|glue |1.4.1 |1.4.1 | | -|lifecycle |0.2.0 |0.2.0 | | -|magrittr |1.5 |1.5 | | -|pillar |1.4.4 |1.4.4 | | -|pkgconfig |2.0.3 |2.0.3 | | -|plogr |0.2.0 |NA |* | -|purrr |0.3.4 |0.3.4 | | -|R6 |2.4.1 |2.4.1 | | -|Rcpp |1.0.4.6 |NA |* | -|rlang |0.4.6 |0.4.6 | | -|tibble |3.0.1 |3.0.1 | | -|tidyselect |1.1.0 |1.1.0 | | -|utf8 |1.1.4 |1.1.4 | | -|vctrs |0.3.0 |0.3.0 | | - # Revdeps -## Failed to check (127) +## Failed to check (15) -|package |version |error |warning |note | -|:--------------------------------------------------|:--------|:---------|:-------|:------| -|ACDm |1.0.4 |1 | | | -|ADMMsigma |2.1 |1 | | | -|airGR |1.4.3.65 |1 | | | -|arrow |0.17.0 |1 | | | -|BAS |1.5.5 |1 | | | -|bayesammi |0.1.0 |1 | | | -|BayesPostEst |0.2.0 |1 | | | -|BgeeDB |2.14.0 |1 | | | -|bigsnpr |1.3.0 |1 | | | -|bioCancer |? | | | | -|BivRec |1.2.0 |1 | | | -|bkmr |0.2.0 |1 | | | -|BMTME |1.0.12 |1 | | | -|BradleyTerryScalable |0.1.0 |1 | | | -|brunnermunzel |1.4.1 |1 | | | -|bsam |1.1.2 |1 | | | -|BUSpaRse |1.1.5 |1 | |1 | -|carat |1.0 |1 | | | -|CaseBasedReasoning |0.1 |1 | | | -|CB2 |1.3.1 |1 | | | -|ChIPseeker |? | | | | -|CINdex |? | | | | -|circumplex |0.3.6 |1 | | | -|clustermq |0.8.9 |1 | |1 | -|clusterProfiler |? | | | | -|CNPBayes |1.13.5 |1 | | | -|colorednoise |1.0.5 |1 | | | -|COMPASS |1.26.0 |1 | |1 | -|concurve |2.5.0 |1 | | | -|corrcoverage |1.2.1 |1 | | | -|Countr |3.5.4 |1 | | | -|cpr |0.2.3 |1 | | | -|crawl |2.2.1 |1 | | | -|CytoML |2.0.0 |1 | | | -|dann |0.2.0 |1 | | | -|DAPAR |1.20.1 |1 | | | -|DataVisualizations |1.1.11 |1 | |1 | -|DEP |1.10.0 |1 | | | -|DepthProc |2.1.3 |1 | | | -|dexter |1.0.7 |1 | | | -|DiffBind |2.16.0 |1 | |5 | -|dodgr |0.2.7 |1 | | | -|downscaledl |1.0 |1 | | | -|dscore |1.2.0 |1 | | | -|dtwclust |5.5.6 |1 | | | -|[DuoClustering2018](failures.md#duoclustering2018) |1.6.0 |-1 __+1__ | |__+1__ | -|dynfrail |0.5.2 |1 | | | -|ENCODExplorer |2.14.0 |1 | |1 | -|exuber |0.4.0 |1 | |1 | -|fable |0.2.0 |1 | | | -|fastLink |0.6.0 |1 | | | -|flowWorkspace |4.0.0 |1 | | | -|fourierin |0.2.4 |1 | | | -|gap |1.2.2 |1 | |1 | -|GAPGOM |? | | | | -|gastempt |0.5.0 |1 | | | -|GenomicMating |2.0 |1 | | | -|geodiv |0.1.1 |1 | | | -|GEOquery |2.56.0 |1 | |4 | -|gespeR |1.20.0 |1 | | | -|goldi |1.0.1 |1 | | | -|graphicalVAR |0.2.3 |1 | | | -|grasp2db |1.1.0 |1 |3 |4 | -|heatwaveR |0.4.2 |1 | |1 | -|ideal |1.12.0 |1 | |1 | -|idefix |0.4.3 |1 | | | -|infercnv |1.4.0 |1 | | | -|iRF |2.0.0 |1 | | | -|joineRML |0.4.4 |1 | | | -|lpirfs |0.1.7 |1 | |1 | -|maEndToEnd |? | | | | -|metagene2 |1.4.0 |1 | | | -|mfbvar |0.5.3 |1 | | | -|miceFast |0.5.1 |1 | | | -|MixMatrix |0.2.4 |1 | | | -|momentuHMM |1.5.1 |1 | | | -|MonetDBLite |0.6.0 |1 | |1 | -|morse |3.2.5 |1 | | | -|mrgsolve |0.10.1 |1 | | | -|NobBS |0.1.0 |1 | | | -|NoRCE |? | | | | -|openair |2.7-2 |1 | | | -|partition |0.1.1 |1 | | | -|pccc |1.0.3 |1 | | | -|phase1PRMD |1.0.2 |1 | | | -|phenofit |0.2.7 |1 | | | -|phyr |1.0.2 |1 | |1 | -|PLNmodels |0.9.5 |1 | | | -|pomp |2.8 |1 | | | -|PPforest |0.1.1 |1 | | | -|pRoloc |1.28.0 |1 | | | -|psychmeta |2.3.8 |1 | | | -|psychonetrics |0.7.1 |1 | | | -|qgraph |1.6.5 |1 | |1 | -|quanteda |2.0.1 |1 | | | -|quokar |0.1.0 |1 | | | -|qwraps2 |0.4.2 |1 | | | -|[Rariant](failures.md#rariant) |1.24.0 |__+1__ |-1 |-3 | -|rbridge |1.0.2 |1 | | | -|registr |1.0.0 |1 | | | -|resautonet |1.0 |1 | | | -|rnaseqGene |1.12.0 |1 | |1 | -|RSSL |0.9.1 |1 | | | -|RxODE |0.9.2-0 |1 | |1 | -|sarima |0.8.2 |1 | | | -|scanstatistics |1.0.1 |1 | | | -|scfind |1.9.0 |1 | | | -|scGPS |? | | | | -|scmap |1.10.0 |1 | | | -|[SCORPIUS](failures.md#scorpius) |1.0.6 |__+1__ | | | -|SCPME |1.0 |1 | | | -|selectKSigs |1.0.0 |1 | | | -|SimBIID |0.1.4 |1 | | | -|simts |0.1.1 |1 | | | -|SpaCCr |0.1.0 |1 | | | -|stcos |0.2.1 |1 | | | -|TCGAbiolinks |2.16.0 |1 | | | -|TCGAbiolinksGUI |1.14.0 |1 | | | -|telefit |1.0.3 |1 | | | -|TestDimorph |0.3.1 |1 | | | -|tidybulk |? | | | | -|ToxicoGx |0.1.1 |1 | | | -|VarSelLCM |2.1.3 |1 | | | -|vlad |0.2.0 |1 | | | -|walker |0.3.1-1 |1 | | | -|weibulltools |1.0.1 |1 | | | -|XBSeq |1.20.0 |1 | |3 | +|package |version |error |warning |note | +|:----------------|:-------|:-----|:-------|:----| +|butcher |? | | | | +|CausalImpact |? | | | | +|CB2 |? | | | | +|cbar |? | | | | +|diceR |? | | | | +|fingertipscharts |0.0.10 |1 | | | +|gastempt |0.5.0 |1 | | | +|MarketMatching |? | | | | +|MonetDB.R |? | | | | +|nesRdata |0.3.1 |1 | | | +|rdflib |0.2.3 |1 | | | +|SimDesign |? | | | | +|trackdf |? | | | | +|trackr |? | | | | +|wrswoR |? | | | | -## New problems (64) +## New problems (87) -|package |version |error |warning |note | -|:------------------------------------------------|:-------|:--------|:-------|:----| -|[AlphaBeta](problems.md#alphabeta) |1.2.0 |__+1__ | |2 | -|[amt](problems.md#amt) |0.1.1 |__+1__ | | | -|[BMSC](problems.md#bmsc) |0.2.0 |__+1__ | |1 | -|[cattonum](problems.md#cattonum) |0.0.4 |__+1__ | | | -|[circRNAprofiler](problems.md#circrnaprofiler) |1.2.0 |1 __+1__ | |1 | -|[CollapseLevels](problems.md#collapselevels) |0.2.0 |__+1__ | | | -|[cvms](problems.md#cvms) |1.0.1 |__+1__ | | | -|[ddpcr](problems.md#ddpcr) |1.14 | |__+1__ | | -|[DEGreport](problems.md#degreport) |1.24.0 |__+2__ | |3 | -|[disk.frame](problems.md#diskframe) |0.3.5 |__+1__ |__+1__ | | -|[DLMtool](problems.md#dlmtool) |5.4.3 |__+1__ | |1 | -|[docxtools](problems.md#docxtools) |0.2.1 |__+2__ | | | -|[driftR](problems.md#driftr) |1.1.0 |__+1__ | | | -|[easyr](problems.md#easyr) |0.3-1 |__+1__ | | | -|[eda4treeR](problems.md#eda4treer) |0.2.0 |__+1__ | |1 | -|[egor](problems.md#egor) |0.20.03 | |__+1__ | | -|[episheet](problems.md#episheet) |0.4.0 |__+2__ | | | -|[expstudies](problems.md#expstudies) |0.0.5 |__+1__ | | | -|[fabletools](problems.md#fabletools) |0.1.3 |__+2__ | | | -|[fingertipscharts](problems.md#fingertipscharts) |0.0.10 |__+2__ | |1 | -|[foieGras](problems.md#foiegras) |0.4.0 |__+2__ | |1 | -|[geometr](problems.md#geometr) |0.2.4 |__+1__ | |1 | -|[geomnet](problems.md#geomnet) |0.2.0 |__+1__ | | | -|[getTBinR](problems.md#gettbinr) |0.7.0 |__+1__ | | | -|[ggedit](problems.md#ggedit) |0.3.0 |__+1__ | |1 | -|[gratia](problems.md#gratia) |0.3.1 |__+1__ | | | -|[HaDeX](problems.md#hadex) |1.1 |__+2__ | |1 | -|[healthcareai](problems.md#healthcareai) |2.4.0 |__+1__ | | | -|[idmodelr](problems.md#idmodelr) |0.3.1 |__+1__ | | | -|[isomiRs](problems.md#isomirs) |1.16.1 |1 __+1__ | |3 | -|[lans2r](problems.md#lans2r) |1.0.5 |__+1__ | | | -|[LexisNexisTools](problems.md#lexisnexistools) |0.3.0 |__+1__ | | | -|[mmetrics](problems.md#mmetrics) |0.3.0 |__+1__ | |1 | -|[MSstatsTMT](problems.md#msstatstmt) |1.6.1 |__+2__ | | | -|[neuropsychology](problems.md#neuropsychology) |0.5.0 |__+1__ | |1 | -|[ngsReports](problems.md#ngsreports) |1.4.1 |__+1__ | |1 | -|[opentripplanner](problems.md#opentripplanner) |0.2.1.0 |__+1__ | |1 | -|[pammtools](problems.md#pammtools) |0.2.3 | |__+1__ | | -|[PAST](problems.md#past) |1.4.1 |__+1__ |2 |1 | -|[photosynthesis](problems.md#photosynthesis) |1.0.0 |__+1__ | |1 | -|[pmdplyr](problems.md#pmdplyr) |0.3.1.1 |__+2__ |__+1__ | | -|[rabhit](problems.md#rabhit) |0.1.4 |__+1__ | | | -|[ratPASTA](problems.md#ratpasta) |0.1.0 |__+1__ | |1 | -|[RCMIP5](problems.md#rcmip5) |1.2.0 |__+1__ | | | -|[rsample](problems.md#rsample) |0.0.6 |__+1__ | | | -|[saotd](problems.md#saotd) |0.2.0 |__+1__ | |1 | -|[sergeant](problems.md#sergeant) |0.5.2 | |__+1__ | | -|[sevenbridges](problems.md#sevenbridges) |1.18.0 |__+1__ | |1 | -|[simglm](problems.md#simglm) |0.7.4 |__+1__ | | | -|[SIRItoGTFS](problems.md#siritogtfs) |0.2.4 |__+1__ | | | -|[skynet](problems.md#skynet) |1.3.0 |__+1__ | |1 | -|[strapgod](problems.md#strapgod) |0.0.4 |__+1__ | | | -|[StratigrapheR](problems.md#stratigrapher) |1.0.1 |__+1__ | | | -|[tidyjson](problems.md#tidyjson) |0.3.0 |__+2__ | | | -|[tidyRSS](problems.md#tidyrss) |2.0.1 |__+1__ | | | -|[tidystats](problems.md#tidystats) |0.4 |__+1__ | |2 | -|[tidystopwords](problems.md#tidystopwords) |0.9.0 |__+1__ | |1 | -|[timeOmics](problems.md#timeomics) |1.0.0 |__+2__ | |3 | -|[TPP](problems.md#tpp) |3.16.0 |__+2__ | |3 | -|[tree.bins](problems.md#treebins) |0.1.1 |__+1__ | |1 | -|[treeplyr](problems.md#treeplyr) |0.1.7 |__+1__ | | | -|[vcfR](problems.md#vcfr) |1.10.0 |__+2__ | | | -|[vpc](problems.md#vpc) |1.2.0 |__+2__ | | | -|[yamlet](problems.md#yamlet) |0.4.7 | |__+1__ |-1 | +|package |version |error |warning |note | +|:--------------------------------------------------|:-------|:------|:-------|:----| +|[amt](problems.md#amt) |0.1.1 |__+1__ | | | +|[anomalize](problems.md#anomalize) |0.2.0 |__+2__ | | | +|[applicable](problems.md#applicable) |0.0.1 |__+1__ | | | +|[bdl](problems.md#bdl) |1.0.2 |__+1__ | | | +|[cattonum](problems.md#cattonum) |0.0.4 |__+1__ | | | +|[codebook](problems.md#codebook) |0.8.2 |__+1__ | |2 | +|[collapse](problems.md#collapse) |1.2.1 |__+1__ | |1 | +|[CollapseLevels](problems.md#collapselevels) |0.2.0 |__+1__ | | | +|[correlationfunnel](problems.md#correlationfunnel) |0.1.0 |__+1__ | |2 | +|[cutpointr](problems.md#cutpointr) |1.0.2 |__+1__ | | | +|[ddpcr](problems.md#ddpcr) |1.14 | |__+1__ | | +|[disk.frame](problems.md#diskframe) |0.3.5 |__+1__ |__+1__ | | +|[distrr](problems.md#distrr) |0.0.5 |__+1__ | | | +|[docxtools](problems.md#docxtools) |0.2.1 |__+2__ | | | +|[driftR](problems.md#driftr) |1.1.0 |__+1__ | | | +|[easyr](problems.md#easyr) |0.3-1 |__+1__ | | | +|[eda4treeR](problems.md#eda4treer) |0.2.0 |__+1__ | |1 | +|[egor](problems.md#egor) |0.20.03 | |__+1__ | | +|[episheet](problems.md#episheet) |0.4.0 |__+2__ | | | +|[europepmc](problems.md#europepmc) |0.3 |__+1__ | | | +|[expstudies](problems.md#expstudies) |0.0.5 |__+1__ | | | +|[fable](problems.md#fable) |0.2.0 |__+2__ | | | +|[fabletools](problems.md#fabletools) |0.1.3 |__+2__ | | | +|[finalfit](problems.md#finalfit) |1.0.1 |__+1__ | | | +|[foieGras](problems.md#foiegras) |0.4.0 |__+2__ | |1 | +|[geometr](problems.md#geometr) |0.2.4 |__+1__ | |1 | +|[getTBinR](problems.md#gettbinr) |0.7.0 |__+1__ | | | +|[ggedit](problems.md#ggedit) |0.3.0 |__+1__ | |1 | +|[gratia](problems.md#gratia) |0.3.1 |__+1__ | | | +|[groupedstats](problems.md#groupedstats) |1.0.0 |__+1__ | | | +|[HaDeX](problems.md#hadex) |1.1 |__+2__ | |1 | +|[healthcareai](problems.md#healthcareai) |2.4.0 |__+1__ | | | +|[idmodelr](problems.md#idmodelr) |0.3.1 |__+1__ | | | +|[immunarch](problems.md#immunarch) |0.6.4 |__+1__ | |2 | +|[IncucyteDRC](problems.md#incucytedrc) |0.5.4 |__+1__ | | | +|[infer](problems.md#infer) |0.5.1 |__+1__ | |1 | +|[iRF](problems.md#irf) |2.0.0 | |__+1__ | | +|[jpndistrict](problems.md#jpndistrict) |0.3.6 |__+1__ | |1 | +|[keyATM](problems.md#keyatm) |0.2.0 |__+1__ | |2 | +|[kiwisR](problems.md#kiwisr) |0.1.8 |__+1__ | | | +|[lpirfs](problems.md#lpirfs) |0.1.7 |__+1__ | |1 | +|[mason](problems.md#mason) |0.2.6 |__+1__ | |1 | +|[mcp](problems.md#mcp) |0.2.0 |__+1__ | |1 | +|[metabolighteR](problems.md#metabolighter) |0.1.0 |__+2__ | | | +|[metamicrobiomeR](problems.md#metamicrobiomer) |1.1 |__+1__ | |1 | +|[mmetrics](problems.md#mmetrics) |0.3.0 |__+1__ | |1 | +|[neuropsychology](problems.md#neuropsychology) |0.5.0 |__+1__ | |1 | +|[opentripplanner](problems.md#opentripplanner) |0.2.1.0 |__+1__ | |1 | +|[pammtools](problems.md#pammtools) |0.2.3 | |__+1__ | | +|[panelr](problems.md#panelr) |0.7.2 |__+2__ | |1 | +|[photosynthesis](problems.md#photosynthesis) |1.0.0 |__+1__ | |1 | +|[pmdplyr](problems.md#pmdplyr) |0.3.1.1 |__+2__ |__+1__ | | +|[ptstem](problems.md#ptstem) |0.0.7 |__+1__ | |1 | +|[purrrogress](problems.md#purrrogress) |0.1.1 |__+1__ | |1 | +|[rabhit](problems.md#rabhit) |0.1.4 |__+1__ | | | +|[radiant.data](problems.md#radiantdata) |1.3.4 |__+1__ | | | +|[rainette](problems.md#rainette) |0.1.1 |__+1__ | | | +|[ratPASTA](problems.md#ratpasta) |0.1.0 |__+1__ | |1 | +|[RCMIP5](problems.md#rcmip5) |1.2.0 |__+1__ | | | +|[rcv](problems.md#rcv) |0.2.1 |__+1__ | |1 | +|[RNeXML](problems.md#rnexml) |2.4.4 |__+1__ | | | +|[rsample](problems.md#rsample) |0.0.6 |__+1__ | | | +|[RTL](problems.md#rtl) |0.1.1 |__+1__ | |2 | +|[rules](problems.md#rules) |0.0.1 |__+1__ | | | +|[saotd](problems.md#saotd) |0.2.0 |__+1__ | |1 | +|[sergeant](problems.md#sergeant) |0.5.2 | |__+1__ | | +|[sf](problems.md#sf) |0.9-3 |__+2__ | |1 | +|[simglm](problems.md#simglm) |0.7.4 |__+1__ | | | +|[simplevis](problems.md#simplevis) |1.1.3 |__+1__ | |1 | +|[SIRItoGTFS](problems.md#siritogtfs) |0.2.4 |__+1__ | | | +|[sistec](problems.md#sistec) |0.0.2 |__+1__ | | | +|[skynet](problems.md#skynet) |1.3.0 |__+1__ | |1 | +|[strapgod](problems.md#strapgod) |0.0.4 |__+1__ | | | +|[StratigrapheR](problems.md#stratigrapher) |1.0.1 |__+1__ | | | +|[sugarbag](problems.md#sugarbag) |0.1.2 |__+1__ | |1 | +|[tidyjson](problems.md#tidyjson) |0.3.0 |__+2__ | | | +|[tidyRSS](problems.md#tidyrss) |2.0.1 |__+1__ | | | +|[tidystats](problems.md#tidystats) |0.4 |__+1__ | |2 | +|[tidystopwords](problems.md#tidystopwords) |0.9.0 |__+1__ | |1 | +|[timetk](problems.md#timetk) |1.0.0 |__+1__ | |2 | +|[tree.bins](problems.md#treebins) |0.1.1 |__+1__ | |1 | +|[treeplyr](problems.md#treeplyr) |0.1.7 |__+1__ | | | +|[tsibble](problems.md#tsibble) |0.8.6 |__+2__ | |1 | +|[vcfR](problems.md#vcfr) |1.10.0 |__+2__ | |1 | +|[vctrs](problems.md#vctrs) |0.3.0 |__+1__ | | | +|[vpc](problems.md#vpc) |1.2.0 |__+2__ | | | +|[yamlet](problems.md#yamlet) |0.4.7 | |__+1__ |-1 | diff --git a/revdep/dplyr/failures.md b/revdep/dplyr/failures.md index 06f156d398..f211a9ca39 100644 --- a/revdep/dplyr/failures.md +++ b/revdep/dplyr/failures.md @@ -1,510 +1,375 @@ -# ACDm +# butcher
-* Version: 1.0.4 -* Source code: https://github.com/cran/ACDm -* Date/Publication: 2016-07-16 12:19:03 -* Number of recursive dependencies: 83 +* Version: 0.1.2 +* Source code: https://github.com/cran/butcher +* URL: https://tidymodels.github.io/butcher, https://github.com/tidymodels/butcher +* BugReports: https://github.com/tidymodels/butcher/issues +* Date/Publication: 2020-01-23 22:40:02 UTC +* Number of recursive dependencies: 181 -Run `revdep_details(,"ACDm")` for more info +Run `cloud_details(, "butcher")` for more info
-## In both - -* checking whether package ‘ACDm’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ACDm/new/ACDm.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘ACDm’ ... -** package ‘ACDm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c computeDurations.c -o computeDurations.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getLL.c -o getLL.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getScore.c -o getScore.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getdudtheta.c -o getdudtheta.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ABACD.c -o sim_ABACD.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ACDCALL.c -o sim_ACDCALL.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ACDSpline.c -o sim_ACDSpline.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_AMACD.c -o sim_AMACD.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_LACD1.c -o sim_LACD1.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_LACD2.c -o sim_LACD2.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ACDm.so computeDurations.o getLL.o getScore.o getdudtheta.o sim_ABACD.o sim_ACDCALL.o sim_ACDSpline.o sim_AMACD.o sim_LACD1.o sim_LACD2.o -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [ACDm.so] Error 1 -ERROR: compilation failed for package ‘ACDm’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ACDm/new/ACDm.Rcheck/ACDm’ +* using log directory ‘/tmp/workdir/butcher/new/butcher.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘butcher/DESCRIPTION’ ... OK +* this is package ‘butcher’ version ‘0.1.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package suggested but not available: ‘NMF’ -``` -### CRAN +The suggested packages are required for a complete check. +Checking can be attempted without them by setting the environment +variable _R_CHECK_FORCE_SUGGESTS_ to a false value. -``` -* installing *source* package ‘ACDm’ ... -** package ‘ACDm’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c computeDurations.c -o computeDurations.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getLL.c -o getLL.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getScore.c -o getScore.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c getdudtheta.c -o getdudtheta.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ABACD.c -o sim_ABACD.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ACDCALL.c -o sim_ACDCALL.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_ACDSpline.c -o sim_ACDSpline.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_AMACD.c -o sim_AMACD.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_LACD1.c -o sim_LACD1.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sim_LACD2.c -o sim_LACD2.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ACDm.so computeDurations.o getLL.o getScore.o getdudtheta.o sim_ABACD.o sim_ACDCALL.o sim_ACDSpline.o sim_AMACD.o sim_LACD1.o sim_LACD2.o -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [ACDm.so] Error 1 -ERROR: compilation failed for package ‘ACDm’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ACDm/old/ACDm.Rcheck/ACDm’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -``` -# ADMMsigma -
-* Version: 2.1 -* Source code: https://github.com/cran/ADMMsigma -* URL: https://github.com/MGallow/ADMMsigma -* BugReports: https://github.com/MGallow/ADMMsigma/issues -* Date/Publication: 2018-08-02 17:10:02 UTC -* Number of recursive dependencies: 83 -Run `revdep_details(,"ADMMsigma")` for more info -
-## In both +``` +### CRAN -* checking whether package ‘ADMMsigma’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ADMMsigma/new/ADMMsigma.Rcheck/00install.out’ for details. - ``` +``` +* using log directory ‘/tmp/workdir/butcher/old/butcher.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘butcher/DESCRIPTION’ ... OK +* this is package ‘butcher’ version ‘0.1.2’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package suggested but not available: ‘NMF’ + +The suggested packages are required for a complete check. +Checking can be attempted without them by setting the environment +variable _R_CHECK_FORCE_SUGGESTS_ to a false value. + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -## Installation -### Devel -``` -* installing *source* package ‘ADMMsigma’ ... -** package ‘ADMMsigma’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CV.cpp -o CV.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CVP.cpp -o CVP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c Sigma.cpp -o Sigma.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c soft.cpp -o soft.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ADMMsigma.so CV.o CVP.o RcppExports.o Sigma.o soft.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [ADMMsigma.so] Error 1 -ERROR: compilation failed for package ‘ADMMsigma’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ADMMsigma/new/ADMMsigma.Rcheck/ADMMsigma’ -``` -### CRAN -``` -* installing *source* package ‘ADMMsigma’ ... -** package ‘ADMMsigma’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CV.cpp -o CV.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CVP.cpp -o CVP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c Sigma.cpp -o Sigma.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/ADMMsigma/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c soft.cpp -o soft.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ADMMsigma.so CV.o CVP.o RcppExports.o Sigma.o soft.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [ADMMsigma.so] Error 1 -ERROR: compilation failed for package ‘ADMMsigma’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ADMMsigma/old/ADMMsigma.Rcheck/ADMMsigma’ ``` -# airGR +# CausalImpact
-* Version: 1.4.3.65 -* Source code: https://github.com/cran/airGR -* URL: https://hydrogr.github.io/airGR/ -* BugReports: https://gitlab.irstea.fr/HYCAR-Hydro/airgr/issues -* Date/Publication: 2020-02-28 16:20:06 UTC -* Number of recursive dependencies: 79 +* Version: 1.2.4 +* Source code: https://github.com/cran/CausalImpact +* URL: https://google.github.io/CausalImpact/ +* Date/Publication: 2020-01-08 23:02:47 UTC +* Number of recursive dependencies: 64 -Run `revdep_details(,"airGR")` for more info +Run `cloud_details(, "CausalImpact")` for more info
-## In both - -* checking whether package ‘airGR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/airGR/new/airGR.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘airGR’ ... -** package ‘airGR’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c airGR.c -o airGR.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_CEMANEIGE.f90 -o frun_CEMANEIGE.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR1A.f90 -o frun_GR1A.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR2M.f90 -o frun_GR2M.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR4H.f90 -o frun_GR4H.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR4J.f90 -o frun_GR4J.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR5H.f90 -o frun_GR5H.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR5J.f90 -o frun_GR5J.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR6J.f90 -o frun_GR6J.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c utils_D.f90 -o utils_D.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c utils_H.f90 -o utils_H.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o airGR.so airGR.o frun_CEMANEIGE.o frun_GR1A.o frun_GR2M.o frun_GR4H.o frun_GR4J.o frun_GR5H.o frun_GR5J.o frun_GR6J.o utils_D.o utils_H.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [airGR.so] Error 1 -ERROR: compilation failed for package ‘airGR’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/airGR/new/airGR.Rcheck/airGR’ +* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘CausalImpact/DESCRIPTION’ ... OK +* this is package ‘CausalImpact’ version ‘1.2.4’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'bsts', 'Boom' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` ### CRAN ``` -* installing *source* package ‘airGR’ ... -** package ‘airGR’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c airGR.c -o airGR.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_CEMANEIGE.f90 -o frun_CEMANEIGE.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR1A.f90 -o frun_GR1A.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR2M.f90 -o frun_GR2M.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR4H.f90 -o frun_GR4H.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR4J.f90 -o frun_GR4J.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR5H.f90 -o frun_GR5H.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR5J.f90 -o frun_GR5J.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c frun_GR6J.f90 -o frun_GR6J.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c utils_D.f90 -o utils_D.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c utils_H.f90 -o utils_H.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o airGR.so airGR.o frun_CEMANEIGE.o frun_GR1A.o frun_GR2M.o frun_GR4H.o frun_GR4J.o frun_GR5H.o frun_GR5J.o frun_GR6J.o utils_D.o utils_H.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [airGR.so] Error 1 -ERROR: compilation failed for package ‘airGR’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/airGR/old/airGR.Rcheck/airGR’ +* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘CausalImpact/DESCRIPTION’ ... OK +* this is package ‘CausalImpact’ version ‘1.2.4’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'bsts', 'Boom' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` -# arrow +# CB2
-* Version: 0.17.0 -* Source code: https://github.com/cran/arrow -* URL: https://github.com/apache/arrow/, https://arrow.apache.org/docs/r -* BugReports: https://issues.apache.org/jira/projects/ARROW/issues -* Date/Publication: 2020-04-21 18:10:02 UTC -* Number of recursive dependencies: 58 +* Version: 1.3.3 +* Source code: https://github.com/cran/CB2 +* Date/Publication: 2020-05-26 11:00:21 UTC +* Number of recursive dependencies: 96 -Run `revdep_details(,"arrow")` for more info +Run `cloud_details(, "CB2")` for more info
-## In both - -* checking whether package ‘arrow’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/arrow/new/arrow.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘arrow’ ... -** package ‘arrow’ successfully unpacked and MD5 sums checked -** using staged installation -*** Generating code with data-raw/codegen.R -Fatal error: cannot open file 'data-raw/codegen.R': No such file or directory -*** Arrow C++ libraries found via pkg-config -PKG_CFLAGS=-DNDEBUG -I/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/include -DARROW_R_WITH_ARROW -PKG_LIBS=-L/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/lib -larrow_dataset -lparquet -larrow -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -I/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/include -DARROW_R_WITH_ARROW -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/arrow/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c array.cpp -o array.o -In file included from array.cpp:18: -././arrow_types.h:200:10: fatal error: 'arrow/c/bridge.h' file not found -#include - ^~~~~~~~~~~~~~~~~~ -1 error generated. -make: *** [array.o] Error 1 -ERROR: compilation failed for package ‘arrow’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/arrow/new/arrow.Rcheck/arrow’ +* using log directory ‘/tmp/workdir/CB2/new/CB2.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘CB2/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘CB2’ version ‘1.3.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘metap’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` ### CRAN ``` -* installing *source* package ‘arrow’ ... -** package ‘arrow’ successfully unpacked and MD5 sums checked -** using staged installation -*** Generating code with data-raw/codegen.R -Fatal error: cannot open file 'data-raw/codegen.R': No such file or directory -*** Arrow C++ libraries found via pkg-config -PKG_CFLAGS=-DNDEBUG -I/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/include -DARROW_R_WITH_ARROW -PKG_LIBS=-L/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/lib -larrow_dataset -lparquet -larrow -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -I/usr/local/Cellar/apache-arrow/HEAD-1286f7a_3/include -DARROW_R_WITH_ARROW -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c array.cpp -o array.o -In file included from array.cpp:18: -././arrow_types.h:200:10: fatal error: 'arrow/c/bridge.h' file not found -#include - ^~~~~~~~~~~~~~~~~~ -1 error generated. -make: *** [array.o] Error 1 -ERROR: compilation failed for package ‘arrow’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/arrow/old/arrow.Rcheck/arrow’ +* using log directory ‘/tmp/workdir/CB2/old/CB2.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘CB2/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘CB2’ version ‘1.3.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘metap’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` -# BAS +# cbar
-* Version: 1.5.5 -* Source code: https://github.com/cran/BAS -* URL: https://www.r-project.org, https://github.com/merliseclyde/BAS -* BugReports: https://github.com/merliseclyde/BAS/issues -* Date/Publication: 2020-01-24 22:50:14 UTC -* Number of recursive dependencies: 88 +* Version: 0.1.3 +* Source code: https://github.com/cran/cbar +* URL: https://github.com/zedoul/cbar +* BugReports: https://github.com/zedoul/cbar/issues +* Date/Publication: 2017-10-24 13:20:22 UTC +* Number of recursive dependencies: 64 -Run `revdep_details(,"BAS")` for more info +Run `cloud_details(, "cbar")` for more info
-## In both - -* checking whether package ‘BAS’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BAS/new/BAS.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘BAS’ ... -** package ‘BAS’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c E_ZS.c -o E_ZS.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ZS_approx_full_np.c -o ZS_approx_full_np.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ZS_approx_null_np.c -o ZS_approx_null_np.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bayesglm.c -o bayesglm.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bayesreg.c -o bayesreg.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c betapriorfamily.c -o betapriorfamily.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c cch.c -o cch.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c const.c -o const.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c family.c -o family.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gamma.c -o gamma.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_deterministic.c -o glm_deterministic.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_fit.c -o glm_fit.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_lpy.c -o glm_lpy.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_mcmc.c -o glm_mcmc.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_mcmcbas.c -o glm_mcmcbas.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_sampleworep.c -o glm_sampleworep.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hg_approx_null_np.c -o hg_approx_null_np.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hyp2f1.c -o hyp2f1.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hyperg.c -o hyperg.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hypergeoF.c -o hypergeoF.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hypergeometric1F1.c -o hypergeometric1F1.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_deterministic.c -o lm_deterministic.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_mcmc.c -o lm_mcmc.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_mcmcbas.c -o lm_mcmcbas.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_sampleworep.c -o lm_sampleworep.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mem.c -o mem.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c model_probabilities.c -o model_probabilities.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mtherr.c -o mtherr.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c polevl.c -o polevl.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c psi.c -o psi.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c tree_structures.c -o tree_structures.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BAS.so E_ZS.o ZS_approx_full_np.o ZS_approx_null_np.o bayesglm.o bayesreg.o betapriorfamily.o cch.o const.o family.o gamma.o glm_deterministic.o glm_fit.o glm_lpy.o glm_mcmc.o glm_mcmcbas.o glm_sampleworep.o hg_approx_null_np.o hyp2f1.o hyperg.o hypergeoF.o hypergeometric1F1.o init.o lm_deterministic.o lm_mcmc.o lm_mcmcbas.o lm_sampleworep.o mem.o model_probabilities.o mtherr.o polevl.o psi.o tree_structures.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [BAS.so] Error 1 -ERROR: compilation failed for package ‘BAS’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BAS/new/BAS.Rcheck/BAS’ +* using log directory ‘/tmp/workdir/cbar/new/cbar.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘cbar/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘cbar’ version ‘0.1.3’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'Boom', 'bsts' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` ### CRAN ``` -* installing *source* package ‘BAS’ ... -** package ‘BAS’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c E_ZS.c -o E_ZS.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ZS_approx_full_np.c -o ZS_approx_full_np.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ZS_approx_null_np.c -o ZS_approx_null_np.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bayesglm.c -o bayesglm.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bayesreg.c -o bayesreg.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c betapriorfamily.c -o betapriorfamily.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c cch.c -o cch.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c const.c -o const.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c family.c -o family.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gamma.c -o gamma.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_deterministic.c -o glm_deterministic.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_fit.c -o glm_fit.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_lpy.c -o glm_lpy.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_mcmc.c -o glm_mcmc.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_mcmcbas.c -o glm_mcmcbas.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c glm_sampleworep.c -o glm_sampleworep.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hg_approx_null_np.c -o hg_approx_null_np.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hyp2f1.c -o hyp2f1.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hyperg.c -o hyperg.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hypergeoF.c -o hypergeoF.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hypergeometric1F1.c -o hypergeometric1F1.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_deterministic.c -o lm_deterministic.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_mcmc.c -o lm_mcmc.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_mcmcbas.c -o lm_mcmcbas.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lm_sampleworep.c -o lm_sampleworep.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mem.c -o mem.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c model_probabilities.c -o model_probabilities.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mtherr.c -o mtherr.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c polevl.c -o polevl.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c psi.c -o psi.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c tree_structures.c -o tree_structures.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BAS.so E_ZS.o ZS_approx_full_np.o ZS_approx_null_np.o bayesglm.o bayesreg.o betapriorfamily.o cch.o const.o family.o gamma.o glm_deterministic.o glm_fit.o glm_lpy.o glm_mcmc.o glm_mcmcbas.o glm_sampleworep.o hg_approx_null_np.o hyp2f1.o hyperg.o hypergeoF.o hypergeometric1F1.o init.o lm_deterministic.o lm_mcmc.o lm_mcmcbas.o lm_sampleworep.o mem.o model_probabilities.o mtherr.o polevl.o psi.o tree_structures.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [BAS.so] Error 1 -ERROR: compilation failed for package ‘BAS’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BAS/old/BAS.Rcheck/BAS’ +* using log directory ‘/tmp/workdir/cbar/old/cbar.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘cbar/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘cbar’ version ‘0.1.3’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'Boom', 'bsts' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` -# bayesammi +# diceR
-* Version: 0.1.0 -* Source code: https://github.com/cran/bayesammi -* Date/Publication: 2018-04-12 09:03:23 UTC -* Number of recursive dependencies: 65 +* Version: 0.6.0 +* Source code: https://github.com/cran/diceR +* URL: https://github.com/AlineTalhouk/diceR, https://alinetalhouk.github.io/diceR +* BugReports: https://github.com/AlineTalhouk/diceR/issues +* Date/Publication: 2019-07-25 20:30:02 UTC +* Number of recursive dependencies: 173 -Run `revdep_details(,"bayesammi")` for more info +Run `cloud_details(, "diceR")` for more info
-## In both - -* checking whether package ‘bayesammi’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bayesammi/new/bayesammi.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘bayesammi’ ... -** package ‘bayesammi’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so - Reason: image not found -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘bayesammi’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bayesammi/new/bayesammi.Rcheck/bayesammi’ +* using log directory ‘/tmp/workdir/diceR/new/diceR.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘diceR/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘diceR’ version ‘0.6.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘NMF’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` ### CRAN ``` -* installing *source* package ‘bayesammi’ ... -** package ‘bayesammi’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bayesammi/gmm/libs/gmm.so - Reason: image not found -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘bayesammi’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bayesammi/old/bayesammi.Rcheck/bayesammi’ +* using log directory ‘/tmp/workdir/diceR/old/diceR.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘diceR/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘diceR’ version ‘0.6.0’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘NMF’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + ``` -# BayesPostEst +# fingertipscharts
-* Version: 0.2.0 -* Source code: https://github.com/cran/BayesPostEst -* URL: https://github.com/ShanaScogin/BayesPostEst -* BugReports: https://github.com/ShanaScogin/BayesPostEst/issues -* Date/Publication: 2019-12-14 23:10:02 UTC +* Version: 0.0.10 +* Source code: https://github.com/cran/fingertipscharts +* BugReports: https://github.com/PublicHealthEngland/fingertipscharts/issues +* Date/Publication: 2019-10-07 15:00:03 UTC * Number of recursive dependencies: 142 -Run `revdep_details(,"BayesPostEst")` for more info +Run `cloud_details(, "fingertipscharts")` for more info
## In both -* checking whether package ‘BayesPostEst’ can be installed ... ERROR +* checking whether package ‘fingertipscharts’ can be installed ... ERROR ``` Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BayesPostEst/new/BayesPostEst.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/fingertipscharts/new/fingertipscharts.Rcheck/00install.out’ for details. ``` ## Installation @@ -512,120 +377,64 @@ Run `revdep_details(,"BayesPostEst")` for more info ### Devel ``` -* installing *source* package ‘BayesPostEst’ ... -** package ‘BayesPostEst’ successfully unpacked and MD5 sums checked +* installing *source* package ‘fingertipscharts’ ... +** package ‘fingertipscharts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_interactive’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_interactive’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_interactive_cat’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_interactive_cat’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_logit’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_logit’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_probit’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_probit’ ** inst ** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so - Reason: image not found +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/opt/R/3.6.3/lib/R/library/jqr/libs/jqr.so': + libjq.so.1: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted -ERROR: lazy loading failed for package ‘BayesPostEst’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BayesPostEst/new/BayesPostEst.Rcheck/BayesPostEst’ +ERROR: lazy loading failed for package ‘fingertipscharts’ +* removing ‘/tmp/workdir/fingertipscharts/new/fingertipscharts.Rcheck/fingertipscharts’ ``` ### CRAN ``` -* installing *source* package ‘BayesPostEst’ ... -** package ‘BayesPostEst’ successfully unpacked and MD5 sums checked +* installing *source* package ‘fingertipscharts’ ... +** package ‘fingertipscharts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_interactive’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_interactive’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_interactive_cat’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_interactive_cat’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_logit’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_logit’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_probit’ -Warning: namespace ‘rjags’ is not available and has been replaced -by .GlobalEnv when processing object ‘jags_probit’ ** inst ** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BayesPostEst/rjags/libs/rjags.so - Reason: image not found +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/opt/R/3.6.3/lib/R/library/jqr/libs/jqr.so': + libjq.so.1: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load Execution halted -ERROR: lazy loading failed for package ‘BayesPostEst’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BayesPostEst/old/BayesPostEst.Rcheck/BayesPostEst’ +ERROR: lazy loading failed for package ‘fingertipscharts’ +* removing ‘/tmp/workdir/fingertipscharts/old/fingertipscharts.Rcheck/fingertipscharts’ ``` -# BgeeDB - -
- -* Version: 2.14.0 -* Source code: https://github.com/cran/BgeeDB -* URL: https://github.com/BgeeDB/BgeeDB_R -* BugReports: https://github.com/BgeeDB/BgeeDB_R/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 73 - -Run `revdep_details(,"BgeeDB")` for more info - -
- -## In both - -* R CMD check timed out - - -# bigsnpr +# gastempt
-* Version: 1.3.0 -* Source code: https://github.com/cran/bigsnpr -* URL: https://privefl.github.io/bigsnpr -* BugReports: https://github.com/privefl/bigsnpr/issues -* Date/Publication: 2020-03-09 20:00:02 UTC -* Number of recursive dependencies: 126 +* Version: 0.5.0 +* Source code: https://github.com/cran/gastempt +* URL: http://github.com/dmenne/gastempt +* BugReports: http://github.com/dmenne/gastempt/issues +* Date/Publication: 2020-05-01 10:10:02 UTC +* Number of recursive dependencies: 88 -Run `revdep_details(,"bigsnpr")` for more info +Run `cloud_details(, "gastempt")` for more info
## In both -* checking whether package ‘bigsnpr’ can be installed ... ERROR +* checking whether package ‘gastempt’ can be installed ... ERROR ``` Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bigsnpr/new/bigsnpr.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/gastempt/new/gastempt.Rcheck/00install.out’ for details. ``` ## Installation @@ -633,80 +442,39 @@ Run `revdep_details(,"bigsnpr")` for more info ### Devel ``` -* installing *source* package ‘bigsnpr’ ... -** package ‘bigsnpr’ successfully unpacked and MD5 sums checked +* installing *source* package ‘gastempt’ ... +** package ‘gastempt’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c assoc-bgen.cpp -o assoc-bgen.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-acc-xptr.cpp -o bed-acc-xptr.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-fun.cpp -o bed-fun.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-prod-vec.cpp -o bed-prod-vec.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping-bed.cpp -o clumping-bed.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping-cached.cpp -o clumping-cached.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping.cpp -o clumping.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c colstats.cpp -o colstats.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c copy-subset.cpp -o copy-subset.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c corr.cpp -o corr.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c impute-simple.cpp -o impute-simple.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c multLinReg.cpp -o multLinReg.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c read-bgen.cpp -o read-bgen.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c read-plink.cpp -o read-plink.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c write-plink.cpp -o write-plink.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o bigsnpr.so RcppExports.o assoc-bgen.o bed-acc-xptr.o bed-fun.o bed-prod-vec.o clumping-bed.o clumping-cached.o clumping.o colstats.o copy-subset.o corr.o impute-simple.o multLinReg.o read-bgen.o read-plink.o write-plink.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [bigsnpr.so] Error 1 -ERROR: compilation failed for package ‘bigsnpr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bigsnpr/new/bigsnpr.Rcheck/bigsnpr’ +Error in loadNamespace(name) : there is no package called ‘rstantools’ +Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘gastempt’ +* removing ‘/tmp/workdir/gastempt/new/gastempt.Rcheck/gastempt’ ``` ### CRAN ``` -* installing *source* package ‘bigsnpr’ ... -** package ‘bigsnpr’ successfully unpacked and MD5 sums checked +* installing *source* package ‘gastempt’ ... +** package ‘gastempt’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' 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-I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-fun.cpp -o bed-fun.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c bed-prod-vec.cpp -o bed-prod-vec.o -clang++ 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-I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping-cached.cpp -o clumping-cached.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c clumping.cpp -o clumping.o -clang++ 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-I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c copy-subset.cpp -o copy-subset.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c corr.cpp -o corr.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c impute-simple.cpp -o impute-simple.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c multLinReg.cpp -o multLinReg.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c read-bgen.cpp -o read-bgen.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c read-plink.cpp -o read-plink.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/bigstatsr/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bigsnpr/rmio/include' -I/usr/local/include -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c write-plink.cpp -o write-plink.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o bigsnpr.so RcppExports.o assoc-bgen.o bed-acc-xptr.o bed-fun.o bed-prod-vec.o clumping-bed.o clumping-cached.o clumping.o colstats.o copy-subset.o corr.o impute-simple.o multLinReg.o read-bgen.o read-plink.o write-plink.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [bigsnpr.so] Error 1 -ERROR: compilation failed for package ‘bigsnpr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bigsnpr/old/bigsnpr.Rcheck/bigsnpr’ +Error in loadNamespace(name) : there is no package called ‘rstantools’ +Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart +Execution halted +ERROR: configuration failed for package ‘gastempt’ +* removing ‘/tmp/workdir/gastempt/old/gastempt.Rcheck/gastempt’ ``` -# bioCancer +# MarketMatching
-* Version: -* Source code: ??? -* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr -* BugReports: https://github.com/tidyverse/dplyr/issues -* Number of recursive dependencies: 0 +* Version: 1.1.2 +* Source code: https://github.com/cran/MarketMatching +* Date/Publication: 2019-07-03 17:10:03 UTC +* Number of recursive dependencies: 79 -Run `revdep_details(,"")` for more info +Run `cloud_details(, "MarketMatching")` for more info
@@ -715,17 +483,25 @@ Run `revdep_details(,"")` for more info ### Devel ``` +* using log directory ‘/tmp/workdir/MarketMatching/new/MarketMatching.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘MarketMatching/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘MarketMatching’ version ‘1.1.2’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘bsts’ - There are binary versions available but the source versions are later: - binary source needs_compilation -openxlsx 4.1.4 4.1.5 TRUE -tidyr 1.0.2 1.0.3 TRUE -writexl 1.2 1.3 TRUE +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR - Binaries will be installed -installing the source package ‘reactome.db’ @@ -733,197 +509,141 @@ installing the source package ‘reactome.db’ ### CRAN ``` +* using log directory ‘/tmp/workdir/MarketMatching/old/MarketMatching.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘MarketMatching/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘MarketMatching’ version ‘1.1.2’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘bsts’ - There are binary versions available but the source versions are later: - binary source needs_compilation -openxlsx 4.1.4 4.1.5 TRUE -tidyr 1.0.2 1.0.3 TRUE -writexl 1.2 1.3 TRUE +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR - Binaries will be installed -installing the source package ‘reactome.db’ ``` -# BivRec +# MonetDB.R
-* Version: 1.2.0 -* Source code: https://github.com/cran/BivRec -* URL: https://github.com/SandraCastroPearson/BivRec -* BugReports: https://github.com/SandraCastroPearson/BivRec/issues -* Date/Publication: 2020-01-15 00:20:11 UTC -* Number of recursive dependencies: 53 +* Version: 1.0.1 +* Source code: https://github.com/cran/MonetDB.R +* URL: http://www.monetdb.org +* Date/Publication: 2016-03-21 23:07:24 +* Number of recursive dependencies: 3 -Run `revdep_details(,"BivRec")` for more info +Run `cloud_details(, "MonetDB.R")` for more info
-## In both - -* checking whether package ‘BivRec’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BivRec/new/BivRec.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘BivRec’ ... -** package ‘BivRec’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BivRec/Rcpp/include' -I/usr/local/include -fPIC -O3 -c BivRec_init.c -o BivRec_init.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bivrecur.f -o bivrecur.o -f951: Warning: Nonconforming tab character in column 6 of line 82 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs] -bivrecur.f:83:7: - - 83 | + (mark1(i,1).le.u1).and.(mark2(i,1).le.u2)) - | 1 -Warning: Nonconforming tab character at (1) [-Wtabs] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c mprovar.f -o mprovar.o -f951: Warning: Nonconforming tab character in column 1 of line 49 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 50 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 52 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 55 [-Wtabs] -mprovar.f:28:40: - - 28 | +gmatx, gmaty, l1, l2, expAx, expAy, subsumx, subsumy, - | 1 -Warning: Unused dummy argument 'expay' at (1) [-Wunused-dummy-argument] -mprovar.f:27:35: - - 27 | subroutine mprovar(n, nparams, xmat, ymat, - | 1 -Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c onesamp.f -o onesamp.o -onesamp.f:61:0: - - 61 | if((gtime(i,1).eq.udt(k)).and.(cen(i,j).gt.0)) - | -Warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c xmproee.f -o xmproee.o -f951: Warning: Nonconforming tab character in column 1 of line 32 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 34 [-Wtabs] -xmproee.f:20:35: - - 20 | subroutine xmproee(n, nparams, di, xmati, - | 1 -Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c ymproee.f -o ymproee.o -f951: Warning: Nonconforming tab character in column 1 of line 32 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 34 [-Wtabs] -ymproee.f:20:35: - - 20 | subroutine ymproee(n, nparams, di, xmati, ymati, - | 1 -Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument] -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BivRec.so BivRec_init.o bivrecur.o mprovar.o onesamp.o xmproee.o ymproee.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [BivRec.so] Error 1 -ERROR: compilation failed for package ‘BivRec’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BivRec/new/BivRec.Rcheck/BivRec’ + + + + + ``` ### CRAN ``` -* installing *source* package ‘BivRec’ ... -** package ‘BivRec’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c BivRec_init.c -o BivRec_init.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bivrecur.f -o bivrecur.o -f951: Warning: Nonconforming tab character in column 6 of line 82 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 100 [-Wtabs] -bivrecur.f:83:7: - - 83 | + (mark1(i,1).le.u1).and.(mark2(i,1).le.u2)) - | 1 -Warning: Nonconforming tab character at (1) [-Wtabs] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c mprovar.f -o mprovar.o -f951: Warning: Nonconforming tab character in column 1 of line 49 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 50 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 52 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 55 [-Wtabs] -mprovar.f:28:40: - - 28 | +gmatx, gmaty, l1, l2, expAx, expAy, subsumx, subsumy, - | 1 -Warning: Unused dummy argument 'expay' at (1) [-Wunused-dummy-argument] -mprovar.f:27:35: - - 27 | subroutine mprovar(n, nparams, xmat, ymat, - | 1 -Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c onesamp.f -o onesamp.o -onesamp.f:61:0: - - 61 | if((gtime(i,1).eq.udt(k)).and.(cen(i,j).gt.0)) - | -Warning: 'j' may be used uninitialized in this function [-Wmaybe-uninitialized] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c xmproee.f -o xmproee.o -f951: Warning: Nonconforming tab character in column 1 of line 32 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 34 [-Wtabs] -xmproee.f:20:35: - - 20 | subroutine xmproee(n, nparams, di, xmati, - | 1 -Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c ymproee.f -o ymproee.o -f951: Warning: Nonconforming tab character in column 1 of line 32 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 34 [-Wtabs] -ymproee.f:20:35: - - 20 | subroutine ymproee(n, nparams, di, xmati, ymati, - | 1 -Warning: Unused dummy argument 'nparams' at (1) [-Wunused-dummy-argument] -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BivRec.so BivRec_init.o bivrecur.o mprovar.o onesamp.o xmproee.o ymproee.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [BivRec.so] Error 1 -ERROR: compilation failed for package ‘BivRec’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BivRec/old/BivRec.Rcheck/BivRec’ +* using log directory ‘/tmp/workdir/MonetDB.R/old/MonetDB.R.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘MonetDB.R/DESCRIPTION’ ... OK +* this is package ‘MonetDB.R’ version ‘1.0.1’ +* checking package namespace information ... OK +* checking package dependencies ... NOTE +Package which this enhances but not available for checking: ‘MonetDBLite’ +* checking if this is a source package ... OK +* checking if there is a namespace ... OK +* checking for executable files ... OK +* checking for hidden files and directories ... OK +* checking for portable file names ... OK +* checking for sufficient/correct file permissions ... OK +* checking whether package ‘MonetDB.R’ can be installed ... OK +* checking installed package size ... OK +* checking package directory ... OK +* checking DESCRIPTION meta-information ... OK +* checking top-level files ... OK +* checking for left-over files ... OK +* checking index information ... OK +* checking package subdirectories ... OK +* checking R files for non-ASCII characters ... OK +* checking R files for syntax errors ... OK +* checking whether the package can be loaded ... OK +* checking whether the package can be loaded with stated dependencies ... OK +* checking whether the package can be unloaded cleanly ... OK +* checking whether the namespace can be loaded with stated dependencies ... OK +* checking whether the namespace can be unloaded cleanly ... OK +* checking loading without being on the library search path ... OK +* checking dependencies in R code ... NOTE +Missing or unexported objects: + ‘dplyr::base_agg’ ‘dplyr::base_scalar’ ‘dplyr::build_sql’ + ‘dplyr::is.ident’ ‘dplyr::sql_infix’ ‘dplyr::sql_prefix’ + ‘dplyr::sql_translator’ ‘dplyr::sql_variant’ ‘dplyr::src_sql’ + ‘dplyr::tbl_sql’ +* checking S3 generic/method consistency ... OK +* checking replacement functions ... OK +* checking foreign function calls ... OK +* checking R code for possible problems ... OK +* checking Rd files ... OK +* checking Rd metadata ... OK +* checking Rd cross-references ... OK +* checking for missing documentation entries ... OK +* checking for code/documentation mismatches ... OK +* checking Rd \usage sections ... OK +* checking Rd contents ... OK +* checking for unstated dependencies in examples ... OK +* checking line endings in C/C++/Fortran sources/headers ... OK +* checking compiled code ... OK +* checking examples ... OK +* DONE +Status: 2 NOTEs + + + + + ``` -# bkmr +# nesRdata
-* Version: 0.2.0 -* Source code: https://github.com/cran/bkmr -* URL: https://github.com/jenfb/bkmr -* BugReports: https://github.com/jenfb/bkmr/issues -* Date/Publication: 2017-03-24 19:03:01 UTC -* Number of recursive dependencies: 38 +* Version: 0.3.1 +* Source code: https://github.com/cran/nesRdata +* URL: https://github.com/jsta/nesRdata +* BugReports: https://github.com/jsta/nesRdata/issues +* Date/Publication: 2020-04-30 17:20:02 UTC +* Number of recursive dependencies: 66 -Run `revdep_details(,"bkmr")` for more info +Run `cloud_details(, "nesRdata")` for more info
## In both -* checking whether package ‘bkmr’ can be installed ... ERROR +* checking whether package ‘nesRdata’ can be installed ... ERROR ``` Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bkmr/new/bkmr.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/00install.out’ for details. ``` ## Installation @@ -931,62 +651,64 @@ Run `revdep_details(,"bkmr")` for more info ### Devel ``` -* installing *source* package ‘bkmr’ ... -** package ‘bkmr’ successfully unpacked and MD5 sums checked +* installing *source* package ‘nesRdata’ ... +** package ‘nesRdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so - Reason: image not found + unable to load shared object '/opt/R/3.6.3/lib/R/library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load Execution halted -ERROR: lazy loading failed for package ‘bkmr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bkmr/new/bkmr.Rcheck/bkmr’ +ERROR: lazy loading failed for package ‘nesRdata’ +* removing ‘/tmp/workdir/nesRdata/new/nesRdata.Rcheck/nesRdata’ ``` ### CRAN ``` -* installing *source* package ‘bkmr’ ... -** package ‘bkmr’ successfully unpacked and MD5 sums checked +* installing *source* package ‘nesRdata’ ... +** package ‘nesRdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R +** data +*** moving datasets to lazyload DB +** inst ** byte-compile and prepare package for lazy loading Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bkmr/gmm/libs/gmm.so - Reason: image not found + unable to load shared object '/opt/R/3.6.3/lib/R/library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load Execution halted -ERROR: lazy loading failed for package ‘bkmr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bkmr/old/bkmr.Rcheck/bkmr’ +ERROR: lazy loading failed for package ‘nesRdata’ +* removing ‘/tmp/workdir/nesRdata/old/nesRdata.Rcheck/nesRdata’ ``` -# BMTME +# rdflib
-* Version: 1.0.12 -* Source code: https://github.com/cran/BMTME -* URL: https://github.com/frahik/BMTME -* BugReports: https://github.com/frahik/BMTME/issues/new -* Date/Publication: 2019-10-17 22:30:16 UTC -* Number of recursive dependencies: 61 +* Version: 0.2.3 +* Source code: https://github.com/cran/rdflib +* URL: https://github.com/ropensci/rdflib +* BugReports: https://github.com/ropensci/rdflib/issues +* Date/Publication: 2020-01-10 04:10:02 UTC +* Number of recursive dependencies: 80 -Run `revdep_details(,"BMTME")` for more info +Run `cloud_details(, "rdflib")` for more info
## In both -* checking whether package ‘BMTME’ can be installed ... ERROR +* checking whether package ‘rdflib’ can be installed ... ERROR ``` Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BMTME/new/BMTME.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/00install.out’ for details. ``` ## Installation @@ -994,797 +716,202 @@ Run `revdep_details(,"BMTME")` for more info ### Devel ``` -* installing *source* package ‘BMTME’ ... -** package ‘BMTME’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rdflib’ ... +** package ‘rdflib’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Sample_IW.cpp -o Sample_IW.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BMTME.so RcppExports.o Sample_IW.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [BMTME.so] Error 1 -ERROR: compilation failed for package ‘BMTME’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BMTME/new/BMTME.Rcheck/BMTME’ +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/opt/R/3.6.3/lib/R/library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘rdflib’ +* removing ‘/tmp/workdir/rdflib/new/rdflib.Rcheck/rdflib’ ``` ### CRAN ``` -* installing *source* package ‘BMTME’ ... -** package ‘BMTME’ successfully unpacked and MD5 sums checked +* installing *source* package ‘rdflib’ ... +** package ‘rdflib’ successfully unpacked and MD5 sums checked ** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BMTME/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Sample_IW.cpp -o Sample_IW.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BMTME.so RcppExports.o Sample_IW.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [BMTME.so] Error 1 -ERROR: compilation failed for package ‘BMTME’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BMTME/old/BMTME.Rcheck/BMTME’ +** R +** inst +** byte-compile and prepare package for lazy loading +Error in dyn.load(file, DLLpath = DLLpath, ...) : + unable to load shared object '/opt/R/3.6.3/lib/R/library/redland/libs/redland.so': + librdf.so.0: cannot open shared object file: No such file or directory +Calls: ... asNamespace -> loadNamespace -> library.dynam -> dyn.load +Execution halted +ERROR: lazy loading failed for package ‘rdflib’ +* removing ‘/tmp/workdir/rdflib/old/rdflib.Rcheck/rdflib’ ``` -# BradleyTerryScalable +# SimDesign
-* Version: 0.1.0 -* Source code: https://github.com/cran/BradleyTerryScalable -* URL: https://github.com/EllaKaye/BradleyTerryScalable -* BugReports: https://github.com/EllaKaye/BradleyTerryScalable/issues -* Date/Publication: 2017-06-29 22:39:23 UTC -* Number of recursive dependencies: 68 +* Version: 2.0.1 +* Source code: https://github.com/cran/SimDesign +* URL: https://github.com/philchalmers/SimDesign, https://github.com/philchalmers/SimDesign/wiki +* Date/Publication: 2020-01-20 19:00:02 UTC +* Number of recursive dependencies: 88 -Run `revdep_details(,"BradleyTerryScalable")` for more info +Run `cloud_details(, "SimDesign")` for more info
-## In both - -* checking whether package ‘BradleyTerryScalable’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BradleyTerryScalable/new/BradleyTerryScalable.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘BradleyTerryScalable’ ... -** package ‘BradleyTerryScalable’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c BT_EM_arma_SBT.cpp -o BT_EM_arma_SBT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ILSR_arma.cpp -o ILSR_arma.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c btprob_vec.cpp -o btprob_vec.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BradleyTerryScalable.so BT_EM_arma_SBT.o ILSR_arma.o RcppExports.o btprob_vec.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [BradleyTerryScalable.so] Error 1 -ERROR: compilation failed for package ‘BradleyTerryScalable’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BradleyTerryScalable/new/BradleyTerryScalable.Rcheck/BradleyTerryScalable’ +* using log directory ‘/tmp/workdir/SimDesign/new/SimDesign.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘SimDesign/DESCRIPTION’ ... OK +* this is package ‘SimDesign’ version ‘2.0.1’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package suggested but not available: ‘doMPI’ -``` -### CRAN +The suggested packages are required for a complete check. +Checking can be attempted without them by setting the environment +variable _R_CHECK_FORCE_SUGGESTS_ to a false value. -``` -* installing *source* package ‘BradleyTerryScalable’ ... -** package ‘BradleyTerryScalable’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c BT_EM_arma_SBT.cpp -o BT_EM_arma_SBT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ILSR_arma.cpp -o ILSR_arma.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BradleyTerryScalable/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c btprob_vec.cpp -o btprob_vec.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BradleyTerryScalable.so BT_EM_arma_SBT.o ILSR_arma.o RcppExports.o btprob_vec.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [BradleyTerryScalable.so] Error 1 -ERROR: compilation failed for package ‘BradleyTerryScalable’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BradleyTerryScalable/old/BradleyTerryScalable.Rcheck/BradleyTerryScalable’ +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -``` -# brunnermunzel -
-* Version: 1.4.1 -* Source code: https://github.com/cran/brunnermunzel -* URL: https://github.com/toshi-ara/brunnermunzel -* BugReports: https://github.com/toshi-ara/brunnermunzel/issues/ -* Date/Publication: 2020-01-08 00:50:05 UTC -* Number of recursive dependencies: 64 -Run `revdep_details(,"brunnermunzel")` for more info -
-## In both +``` +### CRAN -* checking whether package ‘brunnermunzel’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/brunnermunzel/new/brunnermunzel.Rcheck/00install.out’ for details. - ``` +``` +* using log directory ‘/tmp/workdir/SimDesign/old/SimDesign.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘SimDesign/DESCRIPTION’ ... OK +* this is package ‘SimDesign’ version ‘2.0.1’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package suggested but not available: ‘doMPI’ + +The suggested packages are required for a complete check. +Checking can be attempted without them by setting the environment +variable _R_CHECK_FORCE_SUGGESTS_ to a false value. + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -## Installation -### Devel -``` -* installing *source* package ‘brunnermunzel’ ... -** package ‘brunnermunzel’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c Rf_wrapper.c -o Rf_wrapper.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_permutation_stat.f -o bm_permutation_stat.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_permutation_test.f -o bm_permutation_test.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_test.f -o bm_test.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c calc_statistics.f -o calc_statistics.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c combination.f -o combination.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c divide_groups.f -o divide_groups.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rank.f -o rank.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o brunnermunzel.so Rf_wrapper.o bm_permutation_stat.o bm_permutation_test.o bm_test.o calc_statistics.o combination.o divide_groups.o rank.o registerDynamicSymbol.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [brunnermunzel.so] Error 1 -ERROR: compilation failed for package ‘brunnermunzel’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/brunnermunzel/new/brunnermunzel.Rcheck/brunnermunzel’ -``` -### CRAN -``` -* installing *source* package ‘brunnermunzel’ ... -** package ‘brunnermunzel’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c Rf_wrapper.c -o Rf_wrapper.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_permutation_stat.f -o bm_permutation_stat.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_permutation_test.f -o bm_permutation_test.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c bm_test.f -o bm_test.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c calc_statistics.f -o calc_statistics.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c combination.f -o combination.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c divide_groups.f -o divide_groups.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rank.f -o rank.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o brunnermunzel.so Rf_wrapper.o bm_permutation_stat.o bm_permutation_test.o bm_test.o calc_statistics.o combination.o divide_groups.o rank.o registerDynamicSymbol.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [brunnermunzel.so] Error 1 -ERROR: compilation failed for package ‘brunnermunzel’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/brunnermunzel/old/brunnermunzel.Rcheck/brunnermunzel’ ``` -# bsam +# trackdf
-* Version: 1.1.2 -* Source code: https://github.com/cran/bsam -* URL: https://github.com/ianjonsen/bsam -* BugReports: https://github.com/ianjonsen/bsam/issues -* Date/Publication: 2017-07-01 02:50:50 UTC -* Number of recursive dependencies: 62 +* Version: 0.2.1 +* Source code: https://github.com/cran/trackdf +* URL: https://swarm-lab.github.io/trackdf/, https://github.com/swarm-lab/trackdf +* BugReports: https://github.com/swarm-lab/trackdf/issues +* Date/Publication: 2019-08-04 14:20:02 UTC +* Number of recursive dependencies: 130 -Run `revdep_details(,"bsam")` for more info +Run `cloud_details(, "trackdf")` for more info
-## In both - -* checking whether package ‘bsam’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bsam/new/bsam.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘bsam’ ... -** package ‘bsam’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rjags’: - .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so - Reason: image not found -Error: package ‘rjags’ could not be loaded -Execution halted -ERROR: lazy loading failed for package ‘bsam’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bsam/new/bsam.Rcheck/bsam’ - -``` -### CRAN - -``` -* installing *source* package ‘bsam’ ... -** package ‘bsam’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: package or namespace load failed for ‘rjags’: - .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/bsam/rjags/libs/rjags.so - Reason: image not found -Error: package ‘rjags’ could not be loaded -Execution halted -ERROR: lazy loading failed for package ‘bsam’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/bsam/old/bsam.Rcheck/bsam’ - -``` -# BUSpaRse - -
- -* Version: 1.1.5 -* Source code: https://github.com/cran/BUSpaRse -* URL: https://github.com/BUStools/BUSpaRse -* BugReports: https://github.com/BUStools/BUSpaRse/issues -* Date/Publication: 2020-04-26 -* Number of recursive dependencies: 137 - -Run `revdep_details(,"BUSpaRse")` for more info - -
- -## In both - -* checking whether package ‘BUSpaRse’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BUSpaRse/new/BUSpaRse.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Packages suggested but not available for checking: - 'TENxBUSData', 'TxDb.Hsapiens.UCSC.hg38.knownGene', - 'EnsDb.Hsapiens.v86' - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘BUSpaRse’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c fill_cell_gene.cpp -o fill_cell_gene.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BUSpaRse.so RcppExports.o fill_cell_gene.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [BUSpaRse.so] Error 1 -ERROR: compilation failed for package ‘BUSpaRse’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BUSpaRse/new/BUSpaRse.Rcheck/BUSpaRse’ - -``` -### CRAN - -``` -* installing *source* package ‘BUSpaRse’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/BUSpaRse/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c fill_cell_gene.cpp -o fill_cell_gene.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BUSpaRse.so RcppExports.o fill_cell_gene.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [BUSpaRse.so] Error 1 -ERROR: compilation failed for package ‘BUSpaRse’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/BUSpaRse/old/BUSpaRse.Rcheck/BUSpaRse’ - -``` -# carat - -
- -* Version: 1.0 -* Source code: https://github.com/cran/carat -* Date/Publication: 2020-05-07 04:40:02 UTC -* Number of recursive dependencies: 55 - -Run `revdep_details(,"carat")` for more info - -
- -## In both - -* checking whether package ‘carat’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/carat/new/carat.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘carat’ ... -** package ‘carat’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c All.cpp -o All.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o carat.so All.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [carat.so] Error 1 -ERROR: compilation failed for package ‘carat’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/carat/new/carat.Rcheck/carat’ - -``` -### CRAN - -``` -* installing *source* package ‘carat’ ... -** package ‘carat’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c All.cpp -o All.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/carat/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o carat.so All.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [carat.so] Error 1 -ERROR: compilation failed for package ‘carat’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/carat/old/carat.Rcheck/carat’ - -``` -# CaseBasedReasoning - -
- -* Version: 0.1 -* Source code: https://github.com/cran/CaseBasedReasoning -* BugReports: https://github.com/sipemu/case-based-reasoning/issues -* Date/Publication: 2018-06-12 10:34:11 UTC -* Number of recursive dependencies: 128 - -Run `revdep_details(,"CaseBasedReasoning")` for more info - -
- -## In both - -* checking whether package ‘CaseBasedReasoning’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CaseBasedReasoning/new/CaseBasedReasoning.Rcheck/00install.out’ for details. - ``` - -## Installation +## Error before installation ### Devel ``` -* installing *source* package ‘CaseBasedReasoning’ ... -** package ‘CaseBasedReasoning’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c distanceAPI.cpp -o distanceAPI.o -In file included from distanceAPI.cpp:1: -./distanceAPI.h:134:16: warning: 'rfDepthXYDistanceAPI::calc' hides overloaded virtual function [-Woverloaded-virtual] - virtual void calc(arma::mat& xNodeIDs, arma::mat& yNodeIDs); - ^ -./distanceAPI.h:121:16: note: hidden overloaded virtual function 'rfDepthDistanceAPI::calc' declared here: different number of parameters (1 vs 2) - virtual void calc(arma::mat& xNodeIDs); - ^ -In file included from distanceAPI.cpp:1: -In file included from ./distanceAPI.h:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/RcppArmadillo.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/RcppArmadilloForward.h:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include/RcppCommon.h:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include/Rcpp/r/headers.h:67: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include/Rcpp/platform/compiler.h:153: -In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/unordered_map:408: -In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__hash_table:16: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'weightedDistance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - __data_.second().~_Tp(); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here - __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here - ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here - return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...); - ^ -distanceAPI.cpp:27:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here - dist_ = std::make_shared(dist); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning - __data_.second().~_Tp(); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'rangerProximity' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - __data_.second().~_Tp(); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here - __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here - ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here - return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...); - ^ -distanceAPI.cpp:89:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here - dist_ = std::make_shared(dist); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning - __data_.second().~_Tp(); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'rfDepthDistance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - __data_.second().~_Tp(); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here - __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here - ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here - return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...); - ^ -distanceAPI.cpp:124:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here - dist_ = std::make_shared(dist); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning - __data_.second().~_Tp(); - ^ -4 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c distances.cpp -o distances.o -In file included from distances.cpp:4: -./distanceAPI.h:134:16: warning: 'rfDepthXYDistanceAPI::calc' hides overloaded virtual function [-Woverloaded-virtual] - virtual void calc(arma::mat& xNodeIDs, arma::mat& yNodeIDs); - ^ -./distanceAPI.h:121:16: note: hidden overloaded virtual function 'rfDepthDistanceAPI::calc' declared here: different number of parameters (1 vs 2) - virtual void calc(arma::mat& xNodeIDs); - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c kNN.cpp -o kNN.o -kNN.cpp:25:19: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations] - order = arma::sort_index(tmpDist, sortDirection); - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here -arma_deprecated -^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated' - #define arma_deprecated __attribute__((__deprecated__)) - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c order.cpp -o order.o -order.cpp:26:21: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations] - order = arma::sort_index(x_.col(i), sortDirection_); - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here -arma_deprecated -^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated' - #define arma_deprecated __attribute__((__deprecated__)) - ^ -order.cpp:75:28: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations] - arma::uvec order = arma::sort_index(x, sortDirection) + 1; - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here -arma_deprecated -^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated' - #define arma_deprecated __attribute__((__deprecated__)) - ^ -2 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c parallelTerminalNodeID.cpp -o parallelTerminalNodeID.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CaseBasedReasoning.so RcppExports.o distanceAPI.o distances.o kNN.o order.o parallelTerminalNodeID.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [CaseBasedReasoning.so] Error 1 -ERROR: compilation failed for package ‘CaseBasedReasoning’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CaseBasedReasoning/new/CaseBasedReasoning.Rcheck/CaseBasedReasoning’ - -``` -### CRAN - -``` -* installing *source* package ‘CaseBasedReasoning’ ... -** package ‘CaseBasedReasoning’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c distanceAPI.cpp -o distanceAPI.o -In file included from distanceAPI.cpp:1: -./distanceAPI.h:134:16: warning: 'rfDepthXYDistanceAPI::calc' hides overloaded virtual function [-Woverloaded-virtual] - virtual void calc(arma::mat& xNodeIDs, arma::mat& yNodeIDs); - ^ -./distanceAPI.h:121:16: note: hidden overloaded virtual function 'rfDepthDistanceAPI::calc' declared here: different number of parameters (1 vs 2) - virtual void calc(arma::mat& xNodeIDs); - ^ -In file included from distanceAPI.cpp:1: -In file included from ./distanceAPI.h:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/RcppArmadillo.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/RcppArmadilloForward.h:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/r/headers.h:67: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/platform/compiler.h:153: -In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/unordered_map:408: -In file included from /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__hash_table:16: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'weightedDistance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - __data_.second().~_Tp(); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here - __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here - ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here - return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...); - ^ -distanceAPI.cpp:27:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here - dist_ = std::make_shared(dist); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning - __data_.second().~_Tp(); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'rangerProximity' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - __data_.second().~_Tp(); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here - __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here - ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here - return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...); - ^ -distanceAPI.cpp:89:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here - dist_ = std::make_shared(dist); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning - __data_.second().~_Tp(); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:5: warning: destructor called on non-final 'rfDepthDistance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - __data_.second().~_Tp(); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3671:9: note: in instantiation of member function 'std::__1::__shared_ptr_emplace >::__on_zero_shared' requested here - __shared_ptr_emplace(_Alloc __a, _Args&& ...__args) - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4331:26: note: in instantiation of function template specialization 'std::__1::__shared_ptr_emplace >::__shared_ptr_emplace' requested here - ::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:4710:29: note: in instantiation of function template specialization 'std::__1::shared_ptr::make_shared' requested here - return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...); - ^ -distanceAPI.cpp:124:16: note: in instantiation of function template specialization 'std::__1::make_shared' requested here - dist_ = std::make_shared(dist); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:3710:23: note: qualify call to silence this warning - __data_.second().~_Tp(); - ^ -4 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c distances.cpp -o distances.o -In file included from distances.cpp:4: -./distanceAPI.h:134:16: warning: 'rfDepthXYDistanceAPI::calc' hides overloaded virtual function [-Woverloaded-virtual] - virtual void calc(arma::mat& xNodeIDs, arma::mat& yNodeIDs); - ^ -./distanceAPI.h:121:16: note: hidden overloaded virtual function 'rfDepthDistanceAPI::calc' declared here: different number of parameters (1 vs 2) - virtual void calc(arma::mat& xNodeIDs); - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c kNN.cpp -o kNN.o -kNN.cpp:25:19: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations] - order = arma::sort_index(tmpDist, sortDirection); - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here -arma_deprecated -^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated' - #define arma_deprecated __attribute__((__deprecated__)) - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c order.cpp -o order.o -order.cpp:26:21: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations] - order = arma::sort_index(x_.col(i), sortDirection_); - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here -arma_deprecated -^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated' - #define arma_deprecated __attribute__((__deprecated__)) - ^ -order.cpp:75:28: warning: 'sort_index >' is deprecated [-Wdeprecated-declarations] - arma::uvec order = arma::sort_index(x, sortDirection) + 1; - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/fn_sort_index.hpp:40:1: note: 'sort_index >' has been explicitly marked deprecated here -arma_deprecated -^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:286:44: note: expanded from macro 'arma_deprecated' - #define arma_deprecated __attribute__((__deprecated__)) - ^ -2 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CaseBasedReasoning/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c parallelTerminalNodeID.cpp -o parallelTerminalNodeID.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CaseBasedReasoning.so RcppExports.o distanceAPI.o distances.o kNN.o order.o parallelTerminalNodeID.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [CaseBasedReasoning.so] Error 1 -ERROR: compilation failed for package ‘CaseBasedReasoning’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CaseBasedReasoning/old/CaseBasedReasoning.Rcheck/CaseBasedReasoning’ - -``` -# CB2 - -
- -* Version: 1.3.1 -* Source code: https://github.com/cran/CB2 -* Date/Publication: 2020-04-15 06:00:02 UTC -* Number of recursive dependencies: 96 +* using log directory ‘/tmp/workdir/trackdf/new/trackdf.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘trackdf/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘trackdf’ version ‘0.2.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package suggested but not available: ‘moveVis’ -Run `revdep_details(,"CB2")` for more info +The suggested packages are required for a complete check. +Checking can be attempted without them by setting the environment +variable _R_CHECK_FORCE_SUGGESTS_ to a false value. -
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -## In both -* checking whether package ‘CB2’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CB2/new/CB2.Rcheck/00install.out’ for details. - ``` -## Installation -### Devel -``` -* installing *source* package ‘CB2’ ... -** package ‘CB2’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CB2.cpp -o CB2.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CB2.so CB2.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [CB2.so] Error 1 -ERROR: compilation failed for package ‘CB2’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CB2/new/CB2.Rcheck/CB2’ ``` ### CRAN ``` -* installing *source* package ‘CB2’ ... -** package ‘CB2’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CB2.cpp -o CB2.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CB2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CB2.so CB2.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [CB2.so] Error 1 -ERROR: compilation failed for package ‘CB2’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CB2/old/CB2.Rcheck/CB2’ - -``` -# ChIPseeker - -
- -* Version: -* Source code: ??? -* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr -* BugReports: https://github.com/tidyverse/dplyr/issues -* Number of recursive dependencies: 0 - -Run `revdep_details(,"")` for more info - -
- -## Error before installation - -### Devel - -``` - - There are binary versions available but the source versions are later: - binary source needs_compilation -ggupset 0.2.1 0.3.0 FALSE -rtracklayer 1.47.0 1.48.0 TRUE -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - - -installing the source packages ‘ggupset’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ - - - -``` -### CRAN +* using log directory ‘/tmp/workdir/trackdf/old/trackdf.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘trackdf/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘trackdf’ version ‘0.2.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package suggested but not available: ‘moveVis’ -``` +The suggested packages are required for a complete check. +Checking can be attempted without them by setting the environment +variable _R_CHECK_FORCE_SUGGESTS_ to a false value. - There are binary versions available but the source versions are later: - binary source needs_compilation -ggupset 0.2.1 0.3.0 FALSE -rtracklayer 1.47.0 1.48.0 TRUE -tidyr 1.0.2 1.0.3 TRUE +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR - Binaries will be installed -installing the source packages ‘ggupset’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ ``` -# CINdex +# trackr
-* Version: -* Source code: ??? -* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr -* BugReports: https://github.com/tidyverse/dplyr/issues -* Number of recursive dependencies: 0 +* Version: 0.10.6 +* Source code: https://github.com/cran/trackr +* Date/Publication: 2020-02-29 05:40:07 UTC +* Number of recursive dependencies: 106 -Run `revdep_details(,"")` for more info +Run `cloud_details(, "trackr")` for more info
@@ -1793,16 +920,26 @@ Run `revdep_details(,"")` for more info ### Devel ``` +* using log directory ‘/tmp/workdir/trackr/new/trackr.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘trackr/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘trackr’ version ‘0.10.6’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: + 'histry', 'CodeDepends', 'rsolr', 'roprov' - There are binary versions available but the source versions are later: - binary source needs_compilation -rtracklayer 1.47.0 1.48.0 TRUE -tidyr 1.0.2 1.0.3 TRUE +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR - Binaries will be installed -installing the source packages ‘Homo.sapiens’, ‘pd.genomewidesnp.6’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg18.knownGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ @@ -1810,123 +947,42 @@ installing the source packages ‘Homo.sapiens’, ‘pd.genomewidesnp.6’, ‘ ### CRAN ``` +* using log directory ‘/tmp/workdir/trackr/old/trackr.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘trackr/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘trackr’ version ‘0.10.6’ +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: + 'histry', 'CodeDepends', 'rsolr', 'roprov' - There are binary versions available but the source versions are later: - binary source needs_compilation -rtracklayer 1.47.0 1.48.0 TRUE -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - - -installing the source packages ‘Homo.sapiens’, ‘pd.genomewidesnp.6’, ‘reactome.db’, ‘TxDb.Hsapiens.UCSC.hg18.knownGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ - - - -``` -# circumplex - -
- -* Version: 0.3.6 -* Source code: https://github.com/cran/circumplex -* URL: https://github.com/jmgirard/circumplex -* BugReports: https://github.com/jmgirard/circumplex/issues -* Date/Publication: 2020-04-29 22:00:03 UTC -* Number of recursive dependencies: 93 - -Run `revdep_details(,"circumplex")` for more info - -
- -## In both - -* checking whether package ‘circumplex’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/circumplex/new/circumplex.Rcheck/00install.out’ for details. - ``` +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -## Installation -### Devel -``` -* installing *source* package ‘circumplex’ ... -** package ‘circumplex’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c circular.cpp -o circular.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c parameters.cpp -o parameters.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o circumplex.so RcppExports.o circular.o parameters.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [circumplex.so] Error 1 -ERROR: compilation failed for package ‘circumplex’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/circumplex/new/circumplex.Rcheck/circumplex’ -``` -### CRAN -``` -* installing *source* package ‘circumplex’ ... -** package ‘circumplex’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c circular.cpp -o circular.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/circumplex/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c parameters.cpp -o parameters.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o circumplex.so RcppExports.o circular.o parameters.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [circumplex.so] Error 1 -ERROR: compilation failed for package ‘circumplex’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/circumplex/old/circumplex.Rcheck/circumplex’ ``` -# clustermq - -
- -* Version: 0.8.9 -* Source code: https://github.com/cran/clustermq -* URL: https://github.com/mschubert/clustermq -* BugReports: https://github.com/mschubert/clustermq/issues -* Date/Publication: 2020-02-29 19:20:02 UTC -* Number of recursive dependencies: 85 - -Run `revdep_details(,"clustermq")` for more info - -
- -## In both - -* R CMD check timed out - - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘R6’ ‘purrr’ - All declared Imports should be used. - ``` - -# clusterProfiler +# wrswoR
-* Version: -* Source code: ??? -* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr -* BugReports: https://github.com/tidyverse/dplyr/issues -* Number of recursive dependencies: 0 +* Version: 1.1 +* Source code: https://github.com/cran/wrswoR +* URL: http://krlmlr.github.io/wrswoR +* BugReports: https://github.com/krlmlr/wrswoR/issues +* Date/Publication: 2018-02-02 18:26:36 UTC +* Number of recursive dependencies: 125 -Run `revdep_details(,"")` for more info +Run `cloud_details(, "wrswoR")` for more info
@@ -1935,12026 +991,62 @@ Run `revdep_details(,"")` for more info ### Devel ``` +* using log directory ‘/tmp/workdir/wrswoR/new/wrswoR.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘wrswoR/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘wrswoR’ version ‘1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package suggested but not available: ‘metap’ - There is a binary version available but the source version is later: - binary source needs_compilation -tidyr 1.0.2 1.0.3 TRUE +The suggested packages are required for a complete check. +Checking can be attempted without them by setting the environment +variable _R_CHECK_FORCE_SUGGESTS_ to a false value. - Binaries will be installed +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -installing the source package ‘reactome.db’ -``` -### CRAN - -``` - - There is a binary version available but the source version is later: - binary source needs_compilation -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - - -installing the source package ‘reactome.db’ - - - -``` -# CNPBayes - -
- -* Version: 1.13.5 -* Source code: https://github.com/cran/CNPBayes -* URL: https://github.com/scristia/CNPBayes -* BugReports: https://github.com/scristia/CNPBayes/issues -* Date/Publication: 2019-01-05 -* Number of recursive dependencies: 161 - -Run `revdep_details(,"CNPBayes")` for more info - -
- -## In both - -* checking whether package ‘CNPBayes’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CNPBayes/new/CNPBayes.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CNPBayes’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c miscfunctions.cpp -o miscfunctions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch.cpp -o multibatch.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch_pooledvar.cpp -o multibatch_pooledvar.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch_reduced.cpp -o multibatch_reduced.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c pooledvar_reduced.cpp -o pooledvar_reduced.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CNPBayes/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c triomodel.cpp -o triomodel.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNPBayes.so RcppExports.o miscfunctions.o multibatch.o multibatch_pooledvar.o multibatch_reduced.o pooledvar_reduced.o triomodel.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [CNPBayes.so] Error 1 -ERROR: compilation failed for package ‘CNPBayes’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CNPBayes/new/CNPBayes.Rcheck/CNPBayes’ ``` ### CRAN ``` -* installing *source* package ‘CNPBayes’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c miscfunctions.cpp -o miscfunctions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch.cpp -o multibatch.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch_pooledvar.cpp -o multibatch_pooledvar.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c multibatch_reduced.cpp -o multibatch_reduced.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c pooledvar_reduced.cpp -o pooledvar_reduced.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c triomodel.cpp -o triomodel.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNPBayes.so RcppExports.o miscfunctions.o multibatch.o multibatch_pooledvar.o multibatch_reduced.o pooledvar_reduced.o triomodel.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [CNPBayes.so] Error 1 -ERROR: compilation failed for package ‘CNPBayes’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CNPBayes/old/CNPBayes.Rcheck/CNPBayes’ - -``` -# colorednoise - -
- -* Version: 1.0.5 -* Source code: https://github.com/cran/colorednoise -* BugReports: http://github.com/japilo/colorednoise/issues -* Date/Publication: 2019-09-27 13:10:02 UTC -* Number of recursive dependencies: 81 - -Run `revdep_details(,"colorednoise")` for more info - -
+* using log directory ‘/tmp/workdir/wrswoR/old/wrswoR.Rcheck’ +* using R version 3.6.3 (2020-02-29) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘wrswoR/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘wrswoR’ version ‘1.1’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package suggested but not available: ‘metap’ -## In both +The suggested packages are required for a complete check. +Checking can be attempted without them by setting the environment +variable _R_CHECK_FORCE_SUGGESTS_ to a false value. -* checking whether package ‘colorednoise’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/colorednoise/new/colorednoise.Rcheck/00install.out’ for details. - ``` +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR -## Installation -### Devel -``` -* installing *source* package ‘colorednoise’ ... -** package ‘colorednoise’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c noise.cpp -o noise.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c simulation.cpp -o simulation.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o colorednoise.so RcppExports.o noise.o simulation.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [colorednoise.so] Error 1 -ERROR: compilation failed for package ‘colorednoise’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/colorednoise/new/colorednoise.Rcheck/colorednoise’ -``` -### CRAN -``` -* installing *source* package ‘colorednoise’ ... -** package ‘colorednoise’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c noise.cpp -o noise.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/colorednoise/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c simulation.cpp -o simulation.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o colorednoise.so RcppExports.o noise.o simulation.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [colorednoise.so] Error 1 -ERROR: compilation failed for package ‘colorednoise’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/colorednoise/old/colorednoise.Rcheck/colorednoise’ ``` -# COMPASS - -
- -* Version: 1.26.0 -* Source code: https://github.com/cran/COMPASS -* BugReports: https://github.com/RGLab/COMPASS/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 132 - -Run `revdep_details(,"COMPASS")` for more info - -
- -## In both - -* checking whether package ‘COMPASS’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/COMPASS/new/COMPASS.Rcheck/00install.out’ for details. - ``` - -* checking for hidden files and directories ... NOTE - ``` - Found the following hidden files and directories: - .github - These were most likely included in error. See section ‘Package - structure’ in the ‘Writing R Extensions’ manual. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘COMPASS’ ... -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c COMPASS_init.c -o COMPASS_init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c CellCounts.cpp -o CellCounts.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c CellCounts_character.cpp -o CellCounts_character.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c digamma.c -o digamma.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c mat2vec.c -o mat2vec.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c melt_dataframe.c -o melt_dataframe.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c melt_matrix.c -o melt_matrix.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c samplePuPs.cpp -o samplePuPs.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c transpose_list.c -o transpose_list.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphas_Exp.cpp -o updatealphas_Exp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphau.cpp -o updatealphau.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphau_noPu_Exp.cpp -o updatealphau_noPu_Exp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatebeta_RW.cpp -o updatebeta_RW.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updategammak_noPu.cpp -o updategammak_noPu.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/COMPASS/Rcpp/include' -I/usr/local/include -fPIC -O3 -c utils.c -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o COMPASS.so COMPASS_init.o CellCounts.o CellCounts_character.o RcppExports.o digamma.o mat2vec.o melt_dataframe.o melt_matrix.o samplePuPs.o transpose_list.o updatealphas_Exp.o updatealphau.o updatealphau_noPu_Exp.o updatebeta_RW.o updategammak_noPu.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [COMPASS.so] Error 1 -ERROR: compilation failed for package ‘COMPASS’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/COMPASS/new/COMPASS.Rcheck/COMPASS’ - -``` -### CRAN - -``` -* installing *source* package ‘COMPASS’ ... -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c COMPASS_init.c -o COMPASS_init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c CellCounts.cpp -o CellCounts.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c CellCounts_character.cpp -o CellCounts_character.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c digamma.c -o digamma.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c mat2vec.c -o mat2vec.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c melt_dataframe.c -o melt_dataframe.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c melt_matrix.c -o melt_matrix.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c samplePuPs.cpp -o samplePuPs.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c transpose_list.c -o transpose_list.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphas_Exp.cpp -o updatealphas_Exp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphau.cpp -o updatealphau.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatealphau_noPu_Exp.cpp -o updatealphau_noPu_Exp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updatebeta_RW.cpp -o updatebeta_RW.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c updategammak_noPu.cpp -o updategammak_noPu.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c utils.c -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o COMPASS.so COMPASS_init.o CellCounts.o CellCounts_character.o RcppExports.o digamma.o mat2vec.o melt_dataframe.o melt_matrix.o samplePuPs.o transpose_list.o updatealphas_Exp.o updatealphau.o updatealphau_noPu_Exp.o updatebeta_RW.o updategammak_noPu.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [COMPASS.so] Error 1 -ERROR: compilation failed for package ‘COMPASS’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/COMPASS/old/COMPASS.Rcheck/COMPASS’ - -``` -# concurve - -
- -* Version: 2.5.0 -* Source code: https://github.com/cran/concurve -* URL: https://data.lesslikely.com/concurve/, https://github.com/zadrafi/concurve, https://lesslikely.com/ -* BugReports: https://github.com/zadrafi/concurve/issues -* Date/Publication: 2020-04-20 06:00:02 UTC -* Number of recursive dependencies: 206 - -Run `revdep_details(,"concurve")` for more info - -
- -## In both - -* checking whether package ‘concurve’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/concurve/new/concurve.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘concurve’ ... -** package ‘concurve’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘ggpubr’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘concurve’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/concurve/new/concurve.Rcheck/concurve’ - -``` -### CRAN - -``` -* installing *source* package ‘concurve’ ... -** package ‘concurve’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘ggpubr’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘concurve’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/concurve/old/concurve.Rcheck/concurve’ - -``` -# corrcoverage - -
- -* Version: 1.2.1 -* Source code: https://github.com/cran/corrcoverage -* URL: https://annahutch.github.io/corrcoverage -* BugReports: https://github.com/annahutch/corrcoverage/issues -* Date/Publication: 2019-12-06 23:20:12 UTC -* Number of recursive dependencies: 69 - -Run `revdep_details(,"corrcoverage")` for more info - -
- -## In both - -* checking whether package ‘corrcoverage’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/corrcoverage/new/corrcoverage.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘corrcoverage’ ... -** package ‘corrcoverage’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c credsetmat.cpp -o credsetmat.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o corrcoverage.so RcppExports.o credsetmat.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [corrcoverage.so] Error 1 -ERROR: compilation failed for package ‘corrcoverage’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/corrcoverage/new/corrcoverage.Rcheck/corrcoverage’ - -``` -### CRAN - -``` -* installing *source* package ‘corrcoverage’ ... -** package ‘corrcoverage’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/corrcoverage/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c credsetmat.cpp -o credsetmat.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o corrcoverage.so RcppExports.o credsetmat.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [corrcoverage.so] Error 1 -ERROR: compilation failed for package ‘corrcoverage’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/corrcoverage/old/corrcoverage.Rcheck/corrcoverage’ - -``` -# Countr - -
- -* Version: 3.5.4 -* Source code: https://github.com/cran/Countr -* URL: https://github.com/GeoBosh/Countr https://geobosh.github.io/Countr/ -* BugReports: https://github.com/GeoBosh/Countr/issues -* Date/Publication: 2019-08-21 11:30:06 UTC -* Number of recursive dependencies: 102 - -Run `revdep_details(,"Countr")` for more info - -
- -## In both - -* checking whether package ‘Countr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Countr/new/Countr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Countr’ ... -** package ‘Countr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c built_in_distributions.cpp -o built_in_distributions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_all.cpp -o conv_all.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_dePril.cpp -o conv_dePril.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_naive.cpp -o conv_naive.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c modifiedRenewal.cpp -o modifiedRenewal.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c series_hetwei.cpp -o series_hetwei.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c series_weibull.cpp -o series_weibull.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Countr.so RcppExports.o built_in_distributions.o conv_all.o conv_dePril.o conv_naive.o modifiedRenewal.o series_hetwei.o series_weibull.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [Countr.so] Error 1 -ERROR: compilation failed for package ‘Countr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Countr/new/Countr.Rcheck/Countr’ - -``` -### CRAN - -``` -* installing *source* package ‘Countr’ ... -** package ‘Countr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c built_in_distributions.cpp -o built_in_distributions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_all.cpp -o conv_all.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_dePril.cpp -o conv_dePril.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c conv_naive.cpp -o conv_naive.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c modifiedRenewal.cpp -o modifiedRenewal.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c series_hetwei.cpp -o series_hetwei.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c series_weibull.cpp -o series_weibull.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/Countr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Countr.so RcppExports.o built_in_distributions.o conv_all.o conv_dePril.o conv_naive.o modifiedRenewal.o series_hetwei.o series_weibull.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [Countr.so] Error 1 -ERROR: compilation failed for package ‘Countr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Countr/old/Countr.Rcheck/Countr’ - -``` -# cpr - -
- -* Version: 0.2.3 -* Source code: https://github.com/cran/cpr -* URL: https://github.com/dewittpe/cpr/ -* Date/Publication: 2017-03-07 13:41:34 -* Number of recursive dependencies: 101 - -Run `revdep_details(,"cpr")` for more info - -
- -## In both - -* checking whether package ‘cpr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/cpr/new/cpr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘cpr’ ... -** package ‘cpr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c boehm.cpp -o boehm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c bsplines.cpp -o bsplines.o -bsplines.cpp:24:10: warning: unused variable 'a' [-Wunused-variable] - double a = 0.0; - ^ -bsplines.cpp:25:10: warning: unused variable 'b' [-Wunused-variable] - double b = 0.0; - ^ -2 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c cpr.cpp -o cpr.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c diag_only.cpp -o diag_only.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c matrix_rank.cpp -o matrix_rank.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c tensors.cpp -o tensors.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cpr.so RcppExports.o boehm.o bsplines.o cpr.o diag_only.o matrix_rank.o registerDynamicSymbol.o tensors.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [cpr.so] Error 1 -ERROR: compilation failed for package ‘cpr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/cpr/new/cpr.Rcheck/cpr’ - -``` -### CRAN - -``` -* installing *source* package ‘cpr’ ... -** package ‘cpr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c boehm.cpp -o boehm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c bsplines.cpp -o bsplines.o -bsplines.cpp:24:10: warning: unused variable 'a' [-Wunused-variable] - double a = 0.0; - ^ -bsplines.cpp:25:10: warning: unused variable 'b' [-Wunused-variable] - double b = 0.0; - ^ -2 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c cpr.cpp -o cpr.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c diag_only.cpp -o diag_only.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c matrix_rank.cpp -o matrix_rank.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/cpr/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c tensors.cpp -o tensors.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cpr.so RcppExports.o boehm.o bsplines.o cpr.o diag_only.o matrix_rank.o registerDynamicSymbol.o tensors.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [cpr.so] Error 1 -ERROR: compilation failed for package ‘cpr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/cpr/old/cpr.Rcheck/cpr’ - -``` -# crawl - -
- -* Version: 2.2.1 -* Source code: https://github.com/cran/crawl -* Date/Publication: 2018-09-14 19:20:10 UTC -* Number of recursive dependencies: 110 - -Run `revdep_details(,"crawl")` for more info - -
- -## In both - -* checking whether package ‘crawl’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/crawl/new/crawl.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘crawl’ ... -** package ‘crawl’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWN2LL.cpp -o CTCRWN2LL.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWN2LL_DRIFT.cpp -o CTCRWN2LL_DRIFT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWPREDICT.cpp -o CTCRWPREDICT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWPREDICT_DRIFT.cpp -o CTCRWPREDICT_DRIFT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWSAMPLE.cpp -o CTCRWSAMPLE.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWSAMPLE_DRIFT.cpp -o CTCRWSAMPLE_DRIFT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c SMM_MATS.cpp -o SMM_MATS.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o crawl.so CTCRWN2LL.o CTCRWN2LL_DRIFT.o CTCRWPREDICT.o CTCRWPREDICT_DRIFT.o CTCRWSAMPLE.o CTCRWSAMPLE_DRIFT.o RcppExports.o SMM_MATS.o init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [crawl.so] Error 1 -ERROR: compilation failed for package ‘crawl’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/crawl/new/crawl.Rcheck/crawl’ - -``` -### CRAN - -``` -* installing *source* package ‘crawl’ ... -** package ‘crawl’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWN2LL.cpp -o CTCRWN2LL.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWN2LL_DRIFT.cpp -o CTCRWN2LL_DRIFT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWPREDICT.cpp -o CTCRWPREDICT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWPREDICT_DRIFT.cpp -o CTCRWPREDICT_DRIFT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWSAMPLE.cpp -o CTCRWSAMPLE.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c CTCRWSAMPLE_DRIFT.cpp -o CTCRWSAMPLE_DRIFT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c SMM_MATS.cpp -o SMM_MATS.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/crawl/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o crawl.so CTCRWN2LL.o CTCRWN2LL_DRIFT.o CTCRWPREDICT.o CTCRWPREDICT_DRIFT.o CTCRWSAMPLE.o CTCRWSAMPLE_DRIFT.o RcppExports.o SMM_MATS.o init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [crawl.so] Error 1 -ERROR: compilation failed for package ‘crawl’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/crawl/old/crawl.Rcheck/crawl’ - -``` -# CytoML - -
- -* Version: 2.0.0 -* Source code: https://github.com/cran/CytoML -* URL: https://github.com/RGLab/CytoML -* BugReports: https://github.com/RGLab/CytoML/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 113 - -Run `revdep_details(,"CytoML")` for more info - -
- -## In both - -* checking whether package ‘CytoML’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CytoML/new/CytoML.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CytoML’ ... -** using staged installation -checking whether the C++ compiler works... yes -checking for C++ compiler default output file name... a.out -checking for suffix of executables... -checking whether we are cross compiling... no -checking for suffix of object files... o -checking whether we are using the GNU C++ compiler... yes -checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 accepts -g... yes -checking for gcc... clang -mmacosx-version-min=10.13 -checking whether we are using the GNU C compiler... yes -checking whether clang -mmacosx-version-min=10.13 accepts -g... yes -checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed -configure: setting xml2 flags... -configure: No directory was specified for --with-xml2. Trying to find xml2 using other methods. -checking for xml2-config... /usr/bin/xml2-config -configure: setting cytolib-ml commandline tool path... -configure: Using the following compilation and linking flags -configure: PKG_CPPFLAGS=-I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900 -configure: PKG_LIBS=-L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib -lxml2 -lz -lpthread -licucore -lm -configure: CYTOLIBML_BIN=/usr/local/bin -configure: creating ./config.status -config.status: creating src/Makevars -config.status: creating R/cytolibml_bin_path.R -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include/ -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900 -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/flowWorkspace/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:4: -In file included from ./../inst/include/CytoML.h:5: -In file included from ../inst/include/CytoML/openWorkspace.hpp:12: -../inst/include/CytoML/winFlowJoWorkspace.hpp:439:30: warning: '/*' within block comment [-Wcomment] - * "*[local-name()='edge']/*[local-name()='vertex']" is for ellipsoidGate - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include/ -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900 -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/flowWorkspace/include' -I/usr/local/include -fPIC -Wall -g -O2 -c parseFlowJoWorkspace.cpp -o parseFlowJoWorkspace.o -In file included from parseFlowJoWorkspace.cpp:9: -In file included from ../inst/include/CytoML/openWorkspace.hpp:12: -../inst/include/CytoML/winFlowJoWorkspace.hpp:439:30: warning: '/*' within block comment [-Wcomment] - * "*[local-name()='edge']/*[local-name()='vertex']" is for ellipsoidGate - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CytoML.so RcppExports.o parseFlowJoWorkspace.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib -lxml2 -lz -lpthread -licucore -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [CytoML.so] Error 1 -ERROR: compilation failed for package ‘CytoML’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CytoML/new/CytoML.Rcheck/CytoML’ - -``` -### CRAN - -``` -* installing *source* package ‘CytoML’ ... -** using staged installation -checking whether the C++ compiler works... yes -checking for C++ compiler default output file name... a.out -checking for suffix of executables... -checking whether we are cross compiling... no -checking for suffix of object files... o -checking whether we are using the GNU C++ compiler... yes -checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 accepts -g... yes -checking for gcc... clang -mmacosx-version-min=10.13 -checking whether we are using the GNU C compiler... yes -checking whether clang -mmacosx-version-min=10.13 accepts -g... yes -checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed -configure: setting xml2 flags... -configure: No directory was specified for --with-xml2. Trying to find xml2 using other methods. -checking for xml2-config... /usr/bin/xml2-config -configure: setting cytolib-ml commandline tool path... -configure: Using the following compilation and linking flags -configure: PKG_CPPFLAGS=-I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900 -configure: PKG_LIBS=-L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib -lxml2 -lz -lpthread -licucore -lm -configure: CYTOLIBML_BIN=/usr/local/bin -configure: creating ./config.status -config.status: creating src/Makevars -config.status: creating R/cytolibml_bin_path.R -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include/ -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900 -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/flowWorkspace/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:4: -In file included from ./../inst/include/CytoML.h:5: -In file included from ../inst/include/CytoML/openWorkspace.hpp:12: -../inst/include/CytoML/winFlowJoWorkspace.hpp:439:30: warning: '/*' within block comment [-Wcomment] - * "*[local-name()='edge']/*[local-name()='vertex']" is for ellipsoidGate - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include/ -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/libxml2 -ftemplate-depth=900 -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/CytoML/flowWorkspace/include' -I/usr/local/include -fPIC -Wall -g -O2 -c parseFlowJoWorkspace.cpp -o parseFlowJoWorkspace.o -In file included from parseFlowJoWorkspace.cpp:9: -In file included from ../inst/include/CytoML/openWorkspace.hpp:12: -../inst/include/CytoML/winFlowJoWorkspace.hpp:439:30: warning: '/*' within block comment [-Wcomment] - * "*[local-name()='edge']/*[local-name()='vertex']" is for ellipsoidGate - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CytoML.so RcppExports.o parseFlowJoWorkspace.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/lib -lxml2 -lz -lpthread -licucore -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [CytoML.so] Error 1 -ERROR: compilation failed for package ‘CytoML’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/CytoML/old/CytoML.Rcheck/CytoML’ - -``` -# dann - -
- -* Version: 0.2.0 -* Source code: https://github.com/cran/dann -* Date/Publication: 2020-03-14 05:20:02 UTC -* Number of recursive dependencies: 86 - -Run `revdep_details(,"dann")` for more info - -
- -## In both - -* checking whether package ‘dann’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dann/new/dann.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘dann’ ... -** package ‘dann’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c internal_armadillo_helpers.cpp -o internal_armadillo_helpers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c internal_helpers_C.cpp -o internal_helpers_C.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dann.so RcppExports.o internal_armadillo_helpers.o internal_helpers_C.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dann.so] Error 1 -ERROR: compilation failed for package ‘dann’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dann/new/dann.Rcheck/dann’ - -``` -### CRAN - -``` -* installing *source* package ‘dann’ ... -** package ‘dann’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c internal_armadillo_helpers.cpp -o internal_armadillo_helpers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dann/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c internal_helpers_C.cpp -o internal_helpers_C.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dann.so RcppExports.o internal_armadillo_helpers.o internal_helpers_C.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dann.so] Error 1 -ERROR: compilation failed for package ‘dann’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dann/old/dann.Rcheck/dann’ - -``` -# DAPAR - -
- -* Version: 1.20.1 -* Source code: https://github.com/cran/DAPAR -* Date/Publication: 2020-05-06 -* Number of recursive dependencies: 248 - -Run `revdep_details(,"DAPAR")` for more info - -
- -## In both - -* checking whether package ‘DAPAR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DAPAR/new/DAPAR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘DAPAR’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so - Reason: image not found -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘DAPAR’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DAPAR/new/DAPAR.Rcheck/DAPAR’ - -``` -### CRAN - -``` -* installing *source* package ‘DAPAR’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DAPAR/gmm/libs/gmm.so - Reason: image not found -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘DAPAR’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DAPAR/old/DAPAR.Rcheck/DAPAR’ - -``` -# DataVisualizations - -
- -* Version: 1.1.11 -* Source code: https://github.com/cran/DataVisualizations -* URL: http://www.deepbionics.org -* BugReports: https://github.com/Mthrun/DataVisualizations/issues -* Date/Publication: 2020-02-13 17:50:02 UTC -* Number of recursive dependencies: 152 - -Run `revdep_details(,"DataVisualizations")` for more info - -
- -## In both - -* checking whether package ‘DataVisualizations’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DataVisualizations/new/DataVisualizations.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘modes’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘DataVisualizations’ ... -** package ‘DataVisualizations’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c c_inPSphere2D.cpp -o c_inPSphere2D.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c c_quantile.cpp -o c_quantile.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DataVisualizations.so RcppExports.o c_inPSphere2D.o c_quantile.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [DataVisualizations.so] Error 1 -ERROR: compilation failed for package ‘DataVisualizations’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DataVisualizations/new/DataVisualizations.Rcheck/DataVisualizations’ - -``` -### CRAN - -``` -* installing *source* package ‘DataVisualizations’ ... -** package ‘DataVisualizations’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c c_inPSphere2D.cpp -o c_inPSphere2D.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DataVisualizations/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c c_quantile.cpp -o c_quantile.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DataVisualizations.so RcppExports.o c_inPSphere2D.o c_quantile.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [DataVisualizations.so] Error 1 -ERROR: compilation failed for package ‘DataVisualizations’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DataVisualizations/old/DataVisualizations.Rcheck/DataVisualizations’ - -``` -# DEP - -
- -* Version: 1.10.0 -* Source code: https://github.com/cran/DEP -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 148 - -Run `revdep_details(,"DEP")` for more info - -
- -## In both - -* checking whether package ‘DEP’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DEP/new/DEP.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘DEP’ ... -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so - Reason: image not found -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘DEP’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DEP/new/DEP.Rcheck/DEP’ - -``` -### CRAN - -``` -* installing *source* package ‘DEP’ ... -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DEP/gmm/libs/gmm.so - Reason: image not found -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘DEP’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DEP/old/DEP.Rcheck/DEP’ - -``` -# DepthProc - -
- -* Version: 2.1.3 -* Source code: https://github.com/cran/DepthProc -* URL: https://www.depthproc.zstat.pl/, https://github.com/zzawadz/DepthProc -* BugReports: https://github.com/zzawadz/DepthProc/issues -* Date/Publication: 2020-02-19 21:00:03 UTC -* Number of recursive dependencies: 115 - -Run `revdep_details(,"DepthProc")` for more info - -
- -## In both - -* checking whether package ‘DepthProc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DepthProc/new/DepthProc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘DepthProc’ ... -** package ‘DepthProc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Depth.cpp -o Depth.o -Depth.cpp:22:14: warning: unused variable 'i' [-Wunused-variable] - size_t k,i; - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationEstimators.cpp -o LocationEstimators.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationScaleDepth.cpp -o LocationScaleDepth.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RobCovLib.cpp -o RobCovLib.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c TukeyDepth.cpp -o TukeyDepth.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Utils.cpp -o Utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c UtilsCPP.cpp -o UtilsCPP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c covFunCPP.cpp -o covFunCPP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c depthFunCPP.cpp -o depthFunCPP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c depthcpp.cpp -o depthcpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DepthProc.so Depth.o LocationEstimators.o LocationScaleDepth.o LocationScaleDepthCPP.o RcppExports.o RobCovLib.o TukeyDepth.o Utils.o UtilsCPP.o covFunCPP.o depthFunCPP.o depthcpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include" -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [DepthProc.so] Error 1 -ERROR: compilation failed for package ‘DepthProc’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DepthProc/new/DepthProc.Rcheck/DepthProc’ - -``` -### CRAN - -``` -* installing *source* package ‘DepthProc’ ... -** package ‘DepthProc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Depth.cpp -o Depth.o -Depth.cpp:22:14: warning: unused variable 'i' [-Wunused-variable] - size_t k,i; - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationEstimators.cpp -o LocationEstimators.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationScaleDepth.cpp -o LocationScaleDepth.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c LocationScaleDepthCPP.cpp -o LocationScaleDepthCPP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RobCovLib.cpp -o RobCovLib.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c TukeyDepth.cpp -o TukeyDepth.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Utils.cpp -o Utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c UtilsCPP.cpp -o UtilsCPP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c covFunCPP.cpp -o covFunCPP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c depthFunCPP.cpp -o depthFunCPP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c depthcpp.cpp -o depthcpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DepthProc.so Depth.o LocationEstimators.o LocationScaleDepth.o LocationScaleDepthCPP.o RcppExports.o RobCovLib.o TukeyDepth.o Utils.o UtilsCPP.o covFunCPP.o depthFunCPP.o depthcpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/DepthProc/RcppArmadillo/include" -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [DepthProc.so] Error 1 -ERROR: compilation failed for package ‘DepthProc’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DepthProc/old/DepthProc.Rcheck/DepthProc’ - -``` -# dexter - -
- -* Version: 1.0.7 -* Source code: https://github.com/cran/dexter -* URL: http://dexterities.netlify.com -* BugReports: https://github.com/jessekps/dexter/issues -* Date/Publication: 2020-04-02 15:00:02 UTC -* Number of recursive dependencies: 76 - -Run `revdep_details(,"dexter")` for more info - -
- -## In both - -* checking whether package ‘dexter’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dexter/new/dexter.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘dexter’ ... -** package ‘dexter’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c data.cpp -o data.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c elsym.cpp -o elsym.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c meanelsym.cpp -o meanelsym.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pascal.cpp -o pascal.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c roger.cpp -o roger.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dexter.so RcppExports.o data.o elsym.o meanelsym.o pascal.o roger.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dexter.so] Error 1 -ERROR: compilation failed for package ‘dexter’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dexter/new/dexter.Rcheck/dexter’ - -``` -### CRAN - -``` -* installing *source* package ‘dexter’ ... -** package ‘dexter’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c data.cpp -o data.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c elsym.cpp -o elsym.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c meanelsym.cpp -o meanelsym.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pascal.cpp -o pascal.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dexter/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c roger.cpp -o roger.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dexter.so RcppExports.o data.o elsym.o meanelsym.o pascal.o roger.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dexter.so] Error 1 -ERROR: compilation failed for package ‘dexter’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dexter/old/dexter.Rcheck/dexter’ - -``` -# DiffBind - -
- -* Version: 2.16.0 -* Source code: https://github.com/cran/DiffBind -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 157 - -Run `revdep_details(,"DiffBind")` for more info - -
- -## In both - -* R CMD check timed out - - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘DESeq’ - - Packages which this enhances but not available for checking: - 'rgl', 'XLConnect' - ``` - -* checking R code for possible problems ... NOTE - ``` - pv.DBAplotVolcano: no visible binding for global variable ‘Fold’ - pv.DBAplotVolcano: no visible binding for global variable ‘Legend’ - Undefined global functions or variables: - Fold Legend - ``` - -* checking contents of ‘data’ directory ... NOTE - ``` - Output for data("tamoxifen_analysis", package = "DiffBind"): - - Output for data("tamoxifen_counts", package = "DiffBind"): - - ``` - -* checking for GNU extensions in Makefiles ... NOTE - ``` - GNU make is a SystemRequirements. - ``` - -* checking compiled code ... NOTE - ``` - File ‘DiffBind/libs/DiffBind.so’: - Found ‘___stderrp’, possibly from ‘stderr’ (C) - Object: ‘sam.o’ - - Compiled code should not call entry points which might terminate R nor - write to stdout/stderr instead of to the console, nor use Fortran I/O - nor system RNGs. - - See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. - ``` - -# dodgr - -
- -* Version: 0.2.7 -* Source code: https://github.com/cran/dodgr -* URL: https://github.com/ATFutures/dodgr -* BugReports: https://github.com/ATFutures/dodgr/issues -* Date/Publication: 2020-05-05 22:20:02 UTC -* Number of recursive dependencies: 94 - -Run `revdep_details(,"dodgr")` for more info - -
- -## In both - -* checking whether package ‘dodgr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dodgr/new/dodgr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘dodgr’ ... -** package ‘dodgr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/bheap.cpp -o heaps/bheap.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/fheap.cpp -o heaps/fheap.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/heap23.cpp -o heaps/heap23.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/triheap.cpp -o heaps/triheap.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c centrality.cpp -o centrality.o -In file included from centrality.cpp:1: -In file included from ./run_sp.h:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/RcppCommon.h:57: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] - static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); - ^ -./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here - EdgeSet edge_set; - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator': - _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, - ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' - __attribute__((diagnose_if(__VA_ARGS__, "warning"))) - ^ ~~~~~~~~~~~ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c dgraph.cpp -o dgraph.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c pathfinders.cpp -o pathfinders.o -In file included from pathfinders.cpp:1: -In file included from ./pathfinders.h:7: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] - static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); - ^ -./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here - EdgeSet edge_set; - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator': - _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, - ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' - __attribute__((diagnose_if(__VA_ARGS__, "warning"))) - ^ ~~~~~~~~~~~ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c dodgr-to-sf.cpp -o dodgr-to-sf.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c flows.cpp -o flows.o -In file included from flows.cpp:2: -In file included from ./run_sp.h:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/RcppCommon.h:57: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] - static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); - ^ -./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here - EdgeSet edge_set; - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator': - _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, - ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' - __attribute__((diagnose_if(__VA_ARGS__, "warning"))) - ^ ~~~~~~~~~~~ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c fund-cycles.cpp -o fund-cycles.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph-contract.cpp -o graph-contract.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph.cpp -o graph.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph-sample.cpp -o graph-sample.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c run_sp.cpp -o run_sp.o -In file included from run_sp.cpp:2: -In file included from ./run_sp.h:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/RcppCommon.h:57: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] - static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); - ^ -./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here - EdgeSet edge_set; - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator': - _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, - ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' - __attribute__((diagnose_if(__VA_ARGS__, "warning"))) - ^ ~~~~~~~~~~~ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c sc-as-network.cpp -o sc-as-network.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c sf-as-network.cpp -o sf-as-network.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c turn_penalty.cpp -o turn_penalty.o -In file included from turn_penalty.cpp:1: -In file included from ./turn_penalty.h:3: -In file included from ./sc-as-network.h:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/Rcpp/include/RcppCommon.h:57: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] - static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); - ^ -turn_penalty.cpp:49:5: note: in instantiation of template class 'std::__1::set >' requested here - erase_non_junctions (the_edges, junction_vertices); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator': - _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, - ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' - __attribute__((diagnose_if(__VA_ARGS__, "warning"))) - ^ ~~~~~~~~~~~ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dodgr.so heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/triheap_ext.o heaps/triheap.o centrality.o dgraph.o pathfinders.o dodgr-to-sf.o flows.o fund-cycles.o graph-contract.o graph.o graph-sample.o RcppExports.o run_sp.o sc-as-network.o sf-as-network.o turn_penalty.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dodgr.so] Error 1 -ERROR: compilation failed for package ‘dodgr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dodgr/new/dodgr.Rcheck/dodgr’ - -``` -### CRAN - -``` -* installing *source* package ‘dodgr’ ... -** package ‘dodgr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/bheap.cpp -o heaps/bheap.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/fheap.cpp -o heaps/fheap.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/heap23.cpp -o heaps/heap23.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/triheap_ext.cpp -o heaps/triheap_ext.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c heaps/triheap.cpp -o heaps/triheap.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c centrality.cpp -o centrality.o -In file included from centrality.cpp:1: -In file included from ./run_sp.h:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:57: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] - static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); - ^ -./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here - EdgeSet edge_set; - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator': - _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, - ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' - __attribute__((diagnose_if(__VA_ARGS__, "warning"))) - ^ ~~~~~~~~~~~ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c dgraph.cpp -o dgraph.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c pathfinders.cpp -o pathfinders.o -In file included from pathfinders.cpp:1: -In file included from ./pathfinders.h:7: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] - static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); - ^ -./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here - EdgeSet edge_set; - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator': - _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, - ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' - __attribute__((diagnose_if(__VA_ARGS__, "warning"))) - ^ ~~~~~~~~~~~ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c dodgr-to-sf.cpp -o dodgr-to-sf.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c flows.cpp -o flows.o -In file included from flows.cpp:2: -In file included from ./run_sp.h:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:57: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] - static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); - ^ -./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here - EdgeSet edge_set; - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator': - _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, - ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' - __attribute__((diagnose_if(__VA_ARGS__, "warning"))) - ^ ~~~~~~~~~~~ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c fund-cycles.cpp -o fund-cycles.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph-contract.cpp -o graph-contract.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph.cpp -o graph.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c graph-sample.cpp -o graph-sample.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c run_sp.cpp -o run_sp.o -In file included from run_sp.cpp:2: -In file included from ./run_sp.h:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:57: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] - static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); - ^ -./pathfinders.h:130:17: note: in instantiation of template class 'std::__1::set >' requested here - EdgeSet edge_set; - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator': - _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, - ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' - __attribute__((diagnose_if(__VA_ARGS__, "warning"))) - ^ ~~~~~~~~~~~ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c sc-as-network.cpp -o sc-as-network.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c sf-as-network.cpp -o sf-as-network.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dodgr/RcppThread/include' -I/usr/local/include -fPIC -Wall -O3 -c turn_penalty.cpp -o turn_penalty.o -In file included from turn_penalty.cpp:1: -In file included from ./turn_penalty.h:3: -In file included from ./sc-as-network.h:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:57: -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/set:454:26: warning: the specified comparator type does not provide a const call operator [-Wuser-defined-warnings] - static_assert(sizeof(__diagnose_non_const_comparator<_Key, _Compare>()), ""); - ^ -turn_penalty.cpp:49:5: note: in instantiation of template class 'std::__1::set >' requested here - erase_non_junctions (the_edges, junction_vertices); - ^ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__tree:967:5: note: from 'diagnose_if' attribute on '__diagnose_non_const_comparator': - _LIBCPP_DIAGNOSE_WARNING(!std::__invokable<_Compare const&, _Tp const&, _Tp const&>::value, - ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1320:21: note: expanded from macro '_LIBCPP_DIAGNOSE_WARNING' - __attribute__((diagnose_if(__VA_ARGS__, "warning"))) - ^ ~~~~~~~~~~~ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dodgr.so heaps/bheap.o heaps/fheap.o heaps/heap23.o heaps/triheap_ext.o heaps/triheap.o centrality.o dgraph.o pathfinders.o dodgr-to-sf.o flows.o fund-cycles.o graph-contract.o graph.o graph-sample.o RcppExports.o run_sp.o sc-as-network.o sf-as-network.o turn_penalty.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dodgr.so] Error 1 -ERROR: compilation failed for package ‘dodgr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dodgr/old/dodgr.Rcheck/dodgr’ - -``` -# downscaledl - -
- -* Version: 1.0 -* Source code: https://github.com/cran/downscaledl -* Date/Publication: 2019-10-24 16:20:10 UTC -* Number of recursive dependencies: 44 - -Run `revdep_details(,"downscaledl")` for more info - -
- -## In both - -* checking whether package ‘downscaledl’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/downscaledl/new/downscaledl.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘downscaledl’ ... -** package ‘downscaledl’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rcpparmabasic.cpp -o rcpparmabasic.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o downscaledl.so RcppExports.o rcpparmabasic.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [downscaledl.so] Error 1 -ERROR: compilation failed for package ‘downscaledl’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/downscaledl/new/downscaledl.Rcheck/downscaledl’ - -``` -### CRAN - -``` -* installing *source* package ‘downscaledl’ ... -** package ‘downscaledl’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/downscaledl/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rcpparmabasic.cpp -o rcpparmabasic.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o downscaledl.so RcppExports.o rcpparmabasic.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [downscaledl.so] Error 1 -ERROR: compilation failed for package ‘downscaledl’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/downscaledl/old/downscaledl.Rcheck/downscaledl’ - -``` -# dscore - -
- -* Version: 1.2.0 -* Source code: https://github.com/cran/dscore -* URL: https://github.com/stefvanbuuren/dscore, https://stefvanbuuren.name/dscore/, https://stefvanbuuren.name/dbook1/ -* BugReports: https://github.com/stefvanbuuren/dscore/issues -* Date/Publication: 2020-04-02 10:20:02 UTC -* Number of recursive dependencies: 91 - -Run `revdep_details(,"dscore")` for more info - -
- -## In both - -* checking whether package ‘dscore’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dscore/new/dscore.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘dscore’ ... -** package ‘dscore’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dscore.cpp -o dscore.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dscore.so RcppExports.o dscore.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dscore.so] Error 1 -ERROR: compilation failed for package ‘dscore’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dscore/new/dscore.Rcheck/dscore’ - -``` -### CRAN - -``` -* installing *source* package ‘dscore’ ... -** package ‘dscore’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dscore/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dscore.cpp -o dscore.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dscore.so RcppExports.o dscore.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dscore.so] Error 1 -ERROR: compilation failed for package ‘dscore’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dscore/old/dscore.Rcheck/dscore’ - -``` -# dtwclust - -
- -* Version: 5.5.6 -* Source code: https://github.com/cran/dtwclust -* URL: https://github.com/asardaes/dtwclust -* BugReports: https://github.com/asardaes/dtwclust/issues -* Date/Publication: 2019-12-11 08:20:02 UTC -* Number of recursive dependencies: 94 - -Run `revdep_details(,"dtwclust")` for more info - -
- -## In both - -* checking whether package ‘dtwclust’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dtwclust/new/dtwclust.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘dtwclust’ ... -** package ‘dtwclust’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/utils.cpp -o utils/utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/R-utils.cpp -o utils/R-utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/ParallelWorker.cpp -o utils/ParallelWorker.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/KahanSummer.cpp -o utils/KahanSummer.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/UndirectedGraph.cpp -o utils/UndirectedGraph.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/envelope.cpp -o utils/envelope.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c centroids/dba.cpp -o centroids/dba.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c centroids/sdtw-cent.cpp -o centroids/sdtw-cent.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/distmat-loop.cpp -o distmat/distmat-loop.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/distmat.cpp -o distmat/distmat.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/fillers.cpp -o distmat/fillers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/dtw-lb.cpp -o distmat/dtw-lb.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c init.cpp -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/dtw-basic.cpp -o distances/dtw-basic.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/R-gateways.cpp -o distances/R-gateways.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/soft-dtw.cpp -o distances/soft-dtw.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/calculators.cpp -o distances/calculators.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/logGAK.cpp -o distances/logGAK.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/lbk.cpp -o distances/lbk.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/lbi.cpp -o distances/lbi.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c tadpole/tadpole.cpp -o tadpole/tadpole.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dtwclust.so ./utils/utils.o ./utils/R-utils.o ./utils/ParallelWorker.o ./utils/KahanSummer.o ./utils/UndirectedGraph.o ./utils/envelope.o ./centroids/dba.o ./centroids/sdtw-cent.o ./distmat/distmat-loop.o ./distmat/distmat.o ./distmat/fillers.o ./distmat/dtw-lb.o ./init.o ./distances/dtw-basic.o ./distances/R-gateways.o ./distances/soft-dtw.o ./distances/calculators.o ./distances/logGAK.o ./distances/lbk.o ./distances/lbi.o ./tadpole/tadpole.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dtwclust.so] Error 1 -ERROR: compilation failed for package ‘dtwclust’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dtwclust/new/dtwclust.Rcheck/dtwclust’ - -``` -### CRAN - -``` -* installing *source* package ‘dtwclust’ ... -** package ‘dtwclust’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/utils.cpp -o utils/utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/R-utils.cpp -o utils/R-utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/ParallelWorker.cpp -o utils/ParallelWorker.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/KahanSummer.cpp -o utils/KahanSummer.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/UndirectedGraph.cpp -o utils/UndirectedGraph.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c utils/envelope.cpp -o utils/envelope.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c centroids/dba.cpp -o centroids/dba.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c centroids/sdtw-cent.cpp -o centroids/sdtw-cent.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/distmat-loop.cpp -o distmat/distmat-loop.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/distmat.cpp -o distmat/distmat.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/fillers.cpp -o distmat/fillers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distmat/dtw-lb.cpp -o distmat/dtw-lb.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c init.cpp -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/dtw-basic.cpp -o distances/dtw-basic.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/R-gateways.cpp -o distances/R-gateways.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/soft-dtw.cpp -o distances/soft-dtw.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/calculators.cpp -o distances/calculators.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/logGAK.cpp -o distances/logGAK.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/lbk.cpp -o distances/lbk.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c distances/lbi.cpp -o distances/lbi.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dtwclust/RcppThread/include' -I/usr/local/include -DRCPP_USE_UNWIND_PROTECT -fPIC -Wall -O3 -c tadpole/tadpole.cpp -o tadpole/tadpole.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dtwclust.so ./utils/utils.o ./utils/R-utils.o ./utils/ParallelWorker.o ./utils/KahanSummer.o ./utils/UndirectedGraph.o ./utils/envelope.o ./centroids/dba.o ./centroids/sdtw-cent.o ./distmat/distmat-loop.o ./distmat/distmat.o ./distmat/fillers.o ./distmat/dtw-lb.o ./init.o ./distances/dtw-basic.o ./distances/R-gateways.o ./distances/soft-dtw.o ./distances/calculators.o ./distances/logGAK.o ./distances/lbk.o ./distances/lbi.o ./tadpole/tadpole.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dtwclust.so] Error 1 -ERROR: compilation failed for package ‘dtwclust’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dtwclust/old/dtwclust.Rcheck/dtwclust’ - -``` -# DuoClustering2018 - -
- -* Version: 1.6.0 -* Source code: https://github.com/cran/DuoClustering2018 -* Date/Publication: 2020-05-07 -* Number of recursive dependencies: 158 - -Run `revdep_details(,"DuoClustering2018")` for more info - -
- -## Newly broken - -* R CMD check timed out - - -* checking R code for possible problems ... NOTE - ``` - ... - plot_timing: no visible binding for global variable ‘dataset’ - plot_timing: no visible binding for global variable ‘method’ - plot_timing: no visible binding for global variable ‘run’ - plot_timing: no visible binding for global variable ‘k’ - plot_timing: no visible binding for global variable ‘cluster’ - plot_timing: no visible binding for global variable ‘trueclass’ - plot_timing: no visible binding for global variable ‘est_k’ - plot_timing: no visible binding for global variable ‘elapsed’ - plot_timing: no visible binding for global variable ‘sce’ - plot_timing: no visible binding for global variable ‘filtering’ - plot_timing: no visible binding for global variable ‘truenclust’ - plot_timing: no visible binding for global variable ‘median.elapsed’ - plot_timing: no visible binding for global variable ‘med.t’ - plot_timing: no visible binding for global variable ‘norm.time’ - plot_timing: no visible binding for global variable ‘medianelapsed’ - Undefined global functions or variables: - ARI ari.stab cell cluster data.wide dataset ds ds.norm elapsed - entropy est_k estnclust filtering k k_diff med.t medARI - median.elapsed median.stability medianARI medianelapsed method - norm.time run s s.norm s.true s.true.norm sce stability trueclass - truenclust - ``` - -## Newly fixed - -* checking whether package ‘DuoClustering2018’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DuoClustering2018/old/DuoClustering2018.Rcheck/00install.out’ for details. - ``` - -# dynfrail - -
- -* Version: 0.5.2 -* Source code: https://github.com/cran/dynfrail -* Date/Publication: 2017-10-30 10:11:49 UTC -* Number of recursive dependencies: 75 - -Run `revdep_details(,"dynfrail")` for more info - -
- -## In both - -* checking whether package ‘dynfrail’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dynfrail/new/dynfrail.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘dynfrail’ ... -** package ‘dynfrail’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c estep_new.cpp -o estep_new.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dynfrail.so RcppExports.o estep_new.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dynfrail.so] Error 1 -ERROR: compilation failed for package ‘dynfrail’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dynfrail/new/dynfrail.Rcheck/dynfrail’ - -``` -### CRAN - -``` -* installing *source* package ‘dynfrail’ ... -** package ‘dynfrail’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dynfrail/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c estep_new.cpp -o estep_new.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dynfrail.so RcppExports.o estep_new.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [dynfrail.so] Error 1 -ERROR: compilation failed for package ‘dynfrail’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/dynfrail/old/dynfrail.Rcheck/dynfrail’ - -``` -# ENCODExplorer - -
- -* Version: 2.14.0 -* Source code: https://github.com/cran/ENCODExplorer -* BugReports: https://github.com/CharlesJB/ENCODExplorer/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 96 - -Run `revdep_details(,"ENCODExplorer")` for more info - -
- -## In both - -* R CMD check timed out - - -* checking R code for possible problems ... NOTE - ``` - createDesign: no visible binding for global variable ‘file_format’ - createDesign: no visible binding for global variable ‘status’ - createDesign: no visible binding for global variable ‘accession’ - createDesign: no visible binding for global variable ‘controls’ - createDesign : get_ctrl_design: no visible binding for global variable - ‘accession’ - createDesign : get_ctrl_design: no visible binding for global variable - ‘href’ - createDesign: no visible global function definition for ‘.’ - createDesign: no visible binding for global variable ‘href’ - createDesign: no visible binding for global variable ‘Experiment’ - createDesign: no visible binding for global variable ‘Value’ - downloadEncode: no visible binding for global variable ‘file_accession’ - downloadEncode: no visible binding for global variable ‘file_format’ - downloadEncode: no visible binding for global variable ‘accession’ - shinyEncode: no visible binding for global variable ‘ui’ - shinyEncode: no visible binding for global variable ‘server’ - Undefined global functions or variables: - . Experiment Value accession controls file_accession file_format href - server status ui - ``` - -# exuber - -
- -* Version: 0.4.0 -* Source code: https://github.com/cran/exuber -* URL: https://github.com/kvasilopoulos/exuber -* BugReports: https://github.com/kvasilopoulos/exuber/issues -* Date/Publication: 2020-05-04 17:10:08 UTC -* Number of recursive dependencies: 91 - -Run `revdep_details(,"exuber")` for more info - -
- -## In both - -* checking whether package ‘exuber’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/exuber/new/exuber.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘exuberdata’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘exuber’ ... -** package ‘exuber’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rls_gsadf.cpp -o rls_gsadf.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o exuber.so RcppExports.o rls_gsadf.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [exuber.so] Error 1 -ERROR: compilation failed for package ‘exuber’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/exuber/new/exuber.Rcheck/exuber’ - -``` -### CRAN - -``` -* installing *source* package ‘exuber’ ... -** package ‘exuber’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/exuber/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rls_gsadf.cpp -o rls_gsadf.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o exuber.so RcppExports.o rls_gsadf.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [exuber.so] Error 1 -ERROR: compilation failed for package ‘exuber’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/exuber/old/exuber.Rcheck/exuber’ - -``` -# fable - -
- -* Version: 0.2.0 -* Source code: https://github.com/cran/fable -* URL: https://fable.tidyverts.org, https://github.com/tidyverts/fable -* BugReports: https://github.com/tidyverts/fable/issues -* Date/Publication: 2020-04-22 13:12:08 UTC -* Number of recursive dependencies: 99 - -Run `revdep_details(,"fable")` for more info - -
- -## In both - -* checking whether package ‘fable’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fable/new/fable.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘fable’ ... -** package ‘fable’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c etsTargetFunction.cpp -o etsTargetFunction.o -In file included from etsTargetFunction.cpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/RcppCommon.h:128: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/Rcpp/exceptions.h:112:53: warning: all paths through this function will call itself [-Winfinite-recursion] - inline void warning(const std::string& message) { // #nocov start - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c etsTargetFunctionWrapper.cpp -o etsTargetFunctionWrapper.o -In file included from etsTargetFunctionWrapper.cpp:10: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/RcppCommon.h:128: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include/Rcpp/exceptions.h:112:53: warning: all paths through this function will call itself [-Winfinite-recursion] - inline void warning(const std::string& message) { // #nocov start - ^ -1 warning generated. -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include' -I/usr/local/include -fPIC -O3 -c etscalc.c -o etscalc.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fable/Rcpp/include' -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fable.so etsTargetFunction.o etsTargetFunctionWrapper.o etscalc.o registerDynamicSymbol.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [fable.so] Error 1 -ERROR: compilation failed for package ‘fable’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fable/new/fable.Rcheck/fable’ - -``` -### CRAN - -``` -* installing *source* package ‘fable’ ... -** package ‘fable’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c etsTargetFunction.cpp -o etsTargetFunction.o -In file included from etsTargetFunction.cpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:128: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/exceptions.h:112:53: warning: all paths through this function will call itself [-Winfinite-recursion] - inline void warning(const std::string& message) { // #nocov start - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c etsTargetFunctionWrapper.cpp -o etsTargetFunctionWrapper.o -In file included from etsTargetFunctionWrapper.cpp:10: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/RcppCommon.h:128: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/exceptions.h:112:53: warning: all paths through this function will call itself [-Winfinite-recursion] - inline void warning(const std::string& message) { // #nocov start - ^ -1 warning generated. -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c etscalc.c -o etscalc.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c registerDynamicSymbol.c -o registerDynamicSymbol.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fable.so etsTargetFunction.o etsTargetFunctionWrapper.o etscalc.o registerDynamicSymbol.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [fable.so] Error 1 -ERROR: compilation failed for package ‘fable’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fable/old/fable.Rcheck/fable’ - -``` -# fastLink - -
- -* Version: 0.6.0 -* Source code: https://github.com/cran/fastLink -* BugReports: https://github.com/kosukeimai/fastLink/issues -* Date/Publication: 2020-04-29 17:00:03 UTC -* Number of recursive dependencies: 72 - -Run `revdep_details(,"fastLink")` for more info - -
- -## In both - -* checking whether package ‘fastLink’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fastLink/new/fastLink.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘fastLink’ ... -** package ‘fastLink’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -O3 -c fastLink_init.c -o fastLink_init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c helpers.cpp -o helpers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c m_func_cpp.cpp -o m_func_cpp.o -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fastLink.so RcppExports.o fastLink_init.o helpers.o m_func_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [fastLink.so] Error 1 -ERROR: compilation failed for package ‘fastLink’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fastLink/new/fastLink.Rcheck/fastLink’ - -``` -### CRAN - -``` -* installing *source* package ‘fastLink’ ... -** package ‘fastLink’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -O3 -c fastLink_init.c -o fastLink_init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c helpers.cpp -o helpers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c m_func_cpp.cpp -o m_func_cpp.o -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from m_func_cpp.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fastLink/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fastLink.so RcppExports.o fastLink_init.o helpers.o m_func_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [fastLink.so] Error 1 -ERROR: compilation failed for package ‘fastLink’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fastLink/old/fastLink.Rcheck/fastLink’ - -``` -# flowWorkspace - -
- -* Version: 4.0.0 -* Source code: https://github.com/cran/flowWorkspace -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 113 - -Run `revdep_details(,"flowWorkspace")` for more info - -
- -## In both - -* checking whether package ‘flowWorkspace’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/new/flowWorkspace.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘flowWorkspace’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_API.cpp -o R_API.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_GatingSet.cpp -o R_GatingSet.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:4: -In file included from ./../inst/include/flowWorkspace.h:6: -In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp.h:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - delete obj; - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here - void Finalizer(T*) = standard_delete_finalizer, - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c cytoframeAPI.cpp -o cytoframeAPI.o -In file included from cytoframeAPI.cpp:2: -In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp.h:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - delete obj; - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here - void Finalizer(T*) = standard_delete_finalizer, - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c cytosetAPI.cpp -o cytosetAPI.o -In file included from cytosetAPI.cpp:2: -In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp.h:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - delete obj; - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here - void Finalizer(T*) = standard_delete_finalizer, - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getDescendants.cpp -o getDescendants.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getPopStats.cpp -o getPopStats.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getSingleCellExpression.cpp -o getSingleCellExpression.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c h5_error_r_handler.cpp -o h5_error_r_handler.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c setCounts.cpp -o setCounts.o -mkdir -p "/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/new/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib" -ar rs "/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/new/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib/libflowWorkspace.a" R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o -ar: creating archive /Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/new/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib/libflowWorkspace.a -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowWorkspace.so R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [flowWorkspace.so] Error 1 -ERROR: compilation failed for package ‘flowWorkspace’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/new/flowWorkspace.Rcheck/flowWorkspace’ - -``` -### CRAN - -``` -* installing *source* package ‘flowWorkspace’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_API.cpp -o R_API.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c R_GatingSet.cpp -o R_GatingSet.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:4: -In file included from ./../inst/include/flowWorkspace.h:6: -In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - delete obj; - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here - void Finalizer(T*) = standard_delete_finalizer, - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c cytoframeAPI.cpp -o cytoframeAPI.o -In file included from cytoframeAPI.cpp:2: -In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - delete obj; - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here - void Finalizer(T*) = standard_delete_finalizer, - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c cytosetAPI.cpp -o cytosetAPI.o -In file included from cytosetAPI.cpp:2: -In file included from ../inst/include/flowWorkspace/pairVectorRcppWrap.h:15: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include/RcppArmadillo.h:34: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp.h:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:30:5: warning: delete called on non-final 'cytolib::CytoFrameView' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] - delete obj; - ^ -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include/Rcpp/XPtr.h:53:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here - void Finalizer(T*) = standard_delete_finalizer, - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getDescendants.cpp -o getDescendants.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getPopStats.cpp -o getPopStats.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c getSingleCellExpression.cpp -o getSingleCellExpression.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c h5_error_r_handler.cpp -o h5_error_r_handler.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RProtoBufLib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/cytolib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/Rhdf5lib/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/flowWorkspace/RcppParallel/include' -I/usr/local/include -fPIC -Wall -O3 -c setCounts.cpp -o setCounts.o -mkdir -p "/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/old/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib" -ar rs "/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/old/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib/libflowWorkspace.a" R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o -ar: creating archive /Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/old/flowWorkspace.Rcheck/00LOCK-flowWorkspace/00new/flowWorkspace/lib/libflowWorkspace.a -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowWorkspace.so R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [flowWorkspace.so] Error 1 -ERROR: compilation failed for package ‘flowWorkspace’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/flowWorkspace/old/flowWorkspace.Rcheck/flowWorkspace’ - -``` -# fourierin - -
- -* Version: 0.2.4 -* Source code: https://github.com/cran/fourierin -* URL: http://github.com/gbasulto/fourierin -* BugReports: https://github.com/gbasulto/fourierin/issues -* Date/Publication: 2019-04-07 12:22:43 UTC -* Number of recursive dependencies: 67 - -Run `revdep_details(,"fourierin")` for more info - -
- -## In both - -* checking whether package ‘fourierin’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fourierin/new/fourierin.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘fourierin’ ... -** package ‘fourierin’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_1d.cpp -o fourierin_1d.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_2d.cpp -o fourierin_2d.o -fourierin_2d.cpp:160:10: warning: local variable 'out' will be copied despite being returned by name [-Wreturn-std-move] - return out; - ^~~ -fourierin_2d.cpp:160:10: note: call 'std::move' explicitly to avoid copying - return out; - ^~~ - std::move(out) -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_1d.cpp -o fourierin_cx_1d.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_2d.cpp -o fourierin_cx_2d.o -fourierin_cx_2d.cpp:157:10: warning: local variable 'out' will be copied despite being returned by name [-Wreturn-std-move] - return out; - ^~~ -fourierin_cx_2d.cpp:157:10: note: call 'std::move' explicitly to avoid copying - return out; - ^~~ - std::move(out) -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_nd.cpp -o fourierin_cx_nd.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fourierin.so RcppExports.o fourierin_1d.o fourierin_2d.o fourierin_cx_1d.o fourierin_cx_2d.o fourierin_cx_nd.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [fourierin.so] Error 1 -ERROR: compilation failed for package ‘fourierin’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fourierin/new/fourierin.Rcheck/fourierin’ - -``` -### CRAN - -``` -* installing *source* package ‘fourierin’ ... -** package ‘fourierin’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_1d.cpp -o fourierin_1d.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_2d.cpp -o fourierin_2d.o -fourierin_2d.cpp:160:10: warning: local variable 'out' will be copied despite being returned by name [-Wreturn-std-move] - return out; - ^~~ -fourierin_2d.cpp:160:10: note: call 'std::move' explicitly to avoid copying - return out; - ^~~ - std::move(out) -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_1d.cpp -o fourierin_cx_1d.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_2d.cpp -o fourierin_cx_2d.o -fourierin_cx_2d.cpp:157:10: warning: local variable 'out' will be copied despite being returned by name [-Wreturn-std-move] - return out; - ^~~ -fourierin_cx_2d.cpp:157:10: note: call 'std::move' explicitly to avoid copying - return out; - ^~~ - std::move(out) -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/fourierin/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c fourierin_cx_nd.cpp -o fourierin_cx_nd.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fourierin.so RcppExports.o fourierin_1d.o fourierin_2d.o fourierin_cx_1d.o fourierin_cx_2d.o fourierin_cx_nd.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [fourierin.so] Error 1 -ERROR: compilation failed for package ‘fourierin’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/fourierin/old/fourierin.Rcheck/fourierin’ - -``` -# gap - -
- -* Version: 1.2.2 -* Source code: https://github.com/cran/gap -* URL: https://github.com/jinghuazhao/R -* BugReports: https://github.com/jinghuazhao/R/issues -* Date/Publication: 2020-02-02 15:10:02 UTC -* Number of recursive dependencies: 142 - -Run `revdep_details(,"gap")` for more info - -
- -## In both - -* checking whether package ‘gap’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gap/new/gap.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘regress’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘gap’ ... -** package ‘gap’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c 2k.c -o 2k.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c 2ld.c -o 2ld.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c cline.c -o cline.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gcontrol_c.c -o gcontrol_c.o -gcontrol_c.c:757:53: warning: if statement has empty body [-Wempty-body] - if(i>=*burn && j==0) /*printf("%14.9f \n",p)*/; - ^ -gcontrol_c.c:757:53: note: put the semicolon on a separate line to silence this warning -1 warning generated. -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gcx.c -o gcx.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gif_c.c -o gif_c.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hap_c.c -o hap_c.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hwe.hardy.c -o hwe.hardy.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c kin.morgan.c -o kin.morgan.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c makeped_c.c -o makeped_c.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mia.c -o mia.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c muvar.c -o muvar.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c package_native_routine_registration_skeleton.c -o package_native_routine_registration_skeleton.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c pfc.f -o pfc.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c pfc.sim.f -o pfc.sim.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pgc_c.c -o pgc_c.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c whscore.c -o whscore.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gap.so 2k.o 2ld.o cline.o gcontrol_c.o gcx.o gif_c.o hap_c.o hwe.hardy.o kin.morgan.o makeped_c.o mia.o muvar.o package_native_routine_registration_skeleton.o pfc.o pfc.sim.o pgc_c.o whscore.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [gap.so] Error 1 -ERROR: compilation failed for package ‘gap’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gap/new/gap.Rcheck/gap’ - -``` -### CRAN - -``` -* installing *source* package ‘gap’ ... -** package ‘gap’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c 2k.c -o 2k.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c 2ld.c -o 2ld.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c cline.c -o cline.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gcontrol_c.c -o gcontrol_c.o -gcontrol_c.c:757:53: warning: if statement has empty body [-Wempty-body] - if(i>=*burn && j==0) /*printf("%14.9f \n",p)*/; - ^ -gcontrol_c.c:757:53: note: put the semicolon on a separate line to silence this warning -1 warning generated. -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gcx.c -o gcx.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gif_c.c -o gif_c.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hap_c.c -o hap_c.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c hwe.hardy.c -o hwe.hardy.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c kin.morgan.c -o kin.morgan.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c makeped_c.c -o makeped_c.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mia.c -o mia.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c muvar.c -o muvar.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c package_native_routine_registration_skeleton.c -o package_native_routine_registration_skeleton.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c pfc.f -o pfc.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c pfc.sim.f -o pfc.sim.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pgc_c.c -o pgc_c.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c whscore.c -o whscore.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o gap.so 2k.o 2ld.o cline.o gcontrol_c.o gcx.o gif_c.o hap_c.o hwe.hardy.o kin.morgan.o makeped_c.o mia.o muvar.o package_native_routine_registration_skeleton.o pfc.o pfc.sim.o pgc_c.o whscore.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [gap.so] Error 1 -ERROR: compilation failed for package ‘gap’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gap/old/gap.Rcheck/gap’ - -``` -# GAPGOM - -
- -* Version: -* Source code: ??? -* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr -* BugReports: https://github.com/tidyverse/dplyr/issues -* Number of recursive dependencies: 0 - -Run `revdep_details(,"")` for more info - -
- -## Error before installation - -### Devel - -``` - - There is a binary version available but the source version is later: - binary source needs_compilation -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - - -installing the source packages ‘org.Ag.eg.db’, ‘org.At.tair.db’, ‘org.Bt.eg.db’, ‘org.Ce.eg.db’, ‘org.Cf.eg.db’, ‘org.Dr.eg.db’, ‘org.EcK12.eg.db’, ‘org.EcSakai.eg.db’, ‘org.Mmu.eg.db’, ‘org.Pf.plasmo.db’, ‘org.Pt.eg.db’, ‘org.Sc.sgd.db’, ‘org.Ss.eg.db’, ‘org.Xl.eg.db’ - - - -``` -### CRAN - -``` - - There is a binary version available but the source version is later: - binary source needs_compilation -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - - -installing the source packages ‘org.Ag.eg.db’, ‘org.At.tair.db’, ‘org.Bt.eg.db’, ‘org.Ce.eg.db’, ‘org.Cf.eg.db’, ‘org.Dr.eg.db’, ‘org.EcK12.eg.db’, ‘org.EcSakai.eg.db’, ‘org.Mmu.eg.db’, ‘org.Pf.plasmo.db’, ‘org.Pt.eg.db’, ‘org.Sc.sgd.db’, ‘org.Ss.eg.db’, ‘org.Xl.eg.db’ - - - -``` -# gastempt - -
- -* Version: 0.5.0 -* Source code: https://github.com/cran/gastempt -* URL: http://github.com/dmenne/gastempt -* BugReports: http://github.com/dmenne/gastempt/issues -* Date/Publication: 2020-05-01 10:10:02 UTC -* Number of recursive dependencies: 87 - -Run `revdep_details(,"gastempt")` for more info - -
- -## In both - -* checking whether package ‘gastempt’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gastempt/new/gastempt.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘gastempt’ ... -** package ‘gastempt’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(name) : there is no package called ‘rstantools’ -Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘gastempt’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gastempt/new/gastempt.Rcheck/gastempt’ - -``` -### CRAN - -``` -* installing *source* package ‘gastempt’ ... -** package ‘gastempt’ successfully unpacked and MD5 sums checked -** using staged installation -Error in loadNamespace(name) : there is no package called ‘rstantools’ -Calls: :: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: configuration failed for package ‘gastempt’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gastempt/old/gastempt.Rcheck/gastempt’ - -``` -# GenomicMating - -
- -* Version: 2.0 -* Source code: https://github.com/cran/GenomicMating -* Date/Publication: 2018-07-01 23:00:03 UTC -* Number of recursive dependencies: 92 - -Run `revdep_details(,"GenomicMating")` for more info - -
- -## In both - -* checking whether package ‘GenomicMating’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/GenomicMating/new/GenomicMating.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘GenomicMating’ ... -** package ‘GenomicMating’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c MatingPrograms.cpp -o MatingPrograms.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GenomicMating.so MatingPrograms.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [GenomicMating.so] Error 1 -ERROR: compilation failed for package ‘GenomicMating’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/GenomicMating/new/GenomicMating.Rcheck/GenomicMating’ - -``` -### CRAN - -``` -* installing *source* package ‘GenomicMating’ ... -** package ‘GenomicMating’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c MatingPrograms.cpp -o MatingPrograms.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/GenomicMating/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GenomicMating.so MatingPrograms.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [GenomicMating.so] Error 1 -ERROR: compilation failed for package ‘GenomicMating’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/GenomicMating/old/GenomicMating.Rcheck/GenomicMating’ - -``` -# geodiv - -
- -* Version: 0.1.1 -* Source code: https://github.com/cran/geodiv -* Date/Publication: 2020-02-13 14:40:08 UTC -* Number of recursive dependencies: 75 - -Run `revdep_details(,"geodiv")` for more info - -
- -## In both - -* checking whether package ‘geodiv’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/geodiv/new/geodiv.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘geodiv’ ... -** package ‘geodiv’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sfd.cpp -o sfd.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o geodiv.so RcppExports.o sfd.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [geodiv.so] Error 1 -ERROR: compilation failed for package ‘geodiv’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/geodiv/new/geodiv.Rcheck/geodiv’ - -``` -### CRAN - -``` -* installing *source* package ‘geodiv’ ... -** package ‘geodiv’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/geodiv/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sfd.cpp -o sfd.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o geodiv.so RcppExports.o sfd.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [geodiv.so] Error 1 -ERROR: compilation failed for package ‘geodiv’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/geodiv/old/geodiv.Rcheck/geodiv’ - -``` -# GEOquery - -
- -* Version: 2.56.0 -* Source code: https://github.com/cran/GEOquery -* URL: https://github.com/seandavi/GEOquery -* BugReports: https://github.com/seandavi/GEOquery/issues/new -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 65 - -Run `revdep_details(,"GEOquery")` for more info - -
- -## In both - -* R CMD check timed out - - -* checking installed package size ... NOTE - ``` - installed size is 13.9Mb - sub-directories of 1Mb or more: - extdata 12.8Mb - ``` - -* checking whether the namespace can be loaded with stated dependencies ... NOTE - ``` - Warning: no function found corresponding to methods exports from ‘GEOquery’ for: ‘show’ - - A namespace must be able to be loaded with just the base namespace - loaded: otherwise if the namespace gets loaded by a saved object, the - session will be unable to start. - - Probably some imports need to be declared in the NAMESPACE file. - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘httr’ - All declared Imports should be used. - Package in Depends field not imported from: ‘methods’ - These packages need to be imported from (in the NAMESPACE file) - for when this namespace is loaded but not attached. - ``` - -* checking R code for possible problems ... NOTE - ``` - ... - fastTabRead: no visible global function definition for ‘read.delim’ - parseGDS: no visible global function definition for ‘new’ - parseGSE: no visible global function definition for ‘new’ - parseGSEMatrix: no visible global function definition for ‘read.table’ - parseGSEMatrix: no visible global function definition for ‘new’ - parseGSEMatrix: no visible binding for global variable ‘.’ - parseGSEMatrix: no visible binding for global variable - ‘characteristics’ - parseGSEMatrix: no visible binding for global variable ‘kvpair’ - parseGSEMatrix: no visible binding for global variable ‘accession’ - parseGSEMatrix: no visible binding for global variable ‘k’ - parseGSEMatrix: no visible binding for global variable ‘v’ - parseGSEMatrix: no visible global function definition for ‘as’ - Undefined global functions or variables: - . MA accession as characteristics k kvpair new read.delim read.table - v - Consider adding - importFrom("methods", "as", "new") - importFrom("utils", "read.delim", "read.table") - to your NAMESPACE file (and ensure that your DESCRIPTION Imports field - contains 'methods'). - ``` - -# gespeR - -
- -* Version: 1.20.0 -* Source code: https://github.com/cran/gespeR -* URL: http://www.cbg.ethz.ch/software/gespeR -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 118 - -Run `revdep_details(,"gespeR")` for more info - -
- -## In both - -* checking whether package ‘gespeR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gespeR/new/gespeR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘gespeR’ ... -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘prada’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘gespeR’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gespeR/new/gespeR.Rcheck/gespeR’ - -``` -### CRAN - -``` -* installing *source* package ‘gespeR’ ... -** using staged installation -** R -** data -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘prada’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘gespeR’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/gespeR/old/gespeR.Rcheck/gespeR’ - -``` -# goldi - -
- -* Version: 1.0.1 -* Source code: https://github.com/cran/goldi -* URL: https://github.com/Chris1221/goldi -* BugReports: https://github.com/Chris1221/goldi/issues -* Date/Publication: 2017-06-28 15:06:20 UTC -* Number of recursive dependencies: 70 - -Run `revdep_details(,"goldi")` for more info - -
- -## In both - -* checking whether package ‘goldi’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/goldi/new/goldi.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘goldi’ ... -** package ‘goldi’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c match.cpp -o match.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o goldi.so RcppExports.o match.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [goldi.so] Error 1 -ERROR: compilation failed for package ‘goldi’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/goldi/new/goldi.Rcheck/goldi’ - -``` -### CRAN - -``` -* installing *source* package ‘goldi’ ... -** package ‘goldi’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/goldi/RcppArmadillo/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c match.cpp -o match.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o goldi.so RcppExports.o match.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [goldi.so] Error 1 -ERROR: compilation failed for package ‘goldi’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/goldi/old/goldi.Rcheck/goldi’ - -``` -# graphicalVAR - -
- -* Version: 0.2.3 -* Source code: https://github.com/cran/graphicalVAR -* Date/Publication: 2020-04-09 14:00:06 UTC -* Number of recursive dependencies: 115 - -Run `revdep_details(,"graphicalVAR")` for more info - -
- -## In both - -* checking whether package ‘graphicalVAR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/graphicalVAR/new/graphicalVAR.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘graphicalVAR’ ... -** package ‘graphicalVAR’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Rothmana.cpp -o Rothmana.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graphicalVAR.so RcppExports.o Rothmana.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [graphicalVAR.so] Error 1 -ERROR: compilation failed for package ‘graphicalVAR’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/graphicalVAR/new/graphicalVAR.Rcheck/graphicalVAR’ - -``` -### CRAN - -``` -* installing *source* package ‘graphicalVAR’ ... -** package ‘graphicalVAR’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/graphicalVAR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Rothmana.cpp -o Rothmana.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graphicalVAR.so RcppExports.o Rothmana.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [graphicalVAR.so] Error 1 -ERROR: compilation failed for package ‘graphicalVAR’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/graphicalVAR/old/graphicalVAR.Rcheck/graphicalVAR’ - -``` -# grasp2db - -
- -* Version: 1.1.0 -* Source code: https://github.com/cran/grasp2db -* Number of recursive dependencies: 118 - -Run `revdep_details(,"grasp2db")` for more info - -
- -## In both - -* R CMD check timed out - - -* checking for missing documentation entries ... WARNING - ``` - Undocumented code objects: - ‘GRASP2’ ‘checkAnti’ ‘getJoinCompatible’ - Undocumented data sets: - ‘mml10p_nox’ ‘uniqueGexNames2.0’ ‘uniquePPDnames2.0’ - All user-level objects in a package should have documentation entries. - See chapter ‘Writing R documentation files’ in the ‘Writing R - Extensions’ manual. - ``` - -* checking data for non-ASCII characters ... WARNING - ``` - Warning: found non-ASCII string - 'Behet's disease' in object 'uniquePPDnames2.0' - ``` - -* checking data for ASCII and uncompressed saves ... WARNING - ``` - - Note: significantly better compression could be obtained - by using R CMD build --resave-data - old_size new_size compress - mml10p_nox.rda 7.1Mb 2.8Mb xz - uniquePPDnames2.0.rda 17Kb 15Kb bzip2 - ``` - -* checking package dependencies ... NOTE - ``` - Package which this enhances but not available for checking: ‘AnnotationHubData’ - ``` - -* checking installed package size ... NOTE - ``` - installed size is 7.6Mb - sub-directories of 1Mb or more: - data 7.1Mb - ``` - -* checking DESCRIPTION meta-information ... NOTE - ``` - License components with restrictions not permitted: - Artistic-2.0 + file LICENSE - ``` - -* checking R code for possible problems ... NOTE - ``` - .grasp2ToAnnotationHub: no visible global function definition for - ‘outputFile’ - checkAnti: no visible binding for global variable ‘chr_hg19’ - getJoinCompatible: no visible binding for global variable ‘gwrngs19’ - Undefined global functions or variables: - chr_hg19 gwrngs19 outputFile - ``` - -# heatwaveR - -
- -* Version: 0.4.2 -* Source code: https://github.com/cran/heatwaveR -* URL: https://robwschlegel.github.io/heatwaveR/index.html, https://github.com/robwschlegel/heatwaveR -* BugReports: https://github.com/robwschlegel/heatwaveR/issues -* Date/Publication: 2019-12-01 21:30:06 UTC -* Number of recursive dependencies: 135 - -Run `revdep_details(,"heatwaveR")` for more info - -
- -## In both - -* checking whether package ‘heatwaveR’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/heatwaveR/new/heatwaveR.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘ggpubr’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘heatwaveR’ ... -** package ‘heatwaveR’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c clim_calc.cpp -o clim_calc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o heatwaveR.so RcppExports.o clim_calc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [heatwaveR.so] Error 1 -ERROR: compilation failed for package ‘heatwaveR’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/heatwaveR/new/heatwaveR.Rcheck/heatwaveR’ - -``` -### CRAN - -``` -* installing *source* package ‘heatwaveR’ ... -** package ‘heatwaveR’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/heatwaveR/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c clim_calc.cpp -o clim_calc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o heatwaveR.so RcppExports.o clim_calc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [heatwaveR.so] Error 1 -ERROR: compilation failed for package ‘heatwaveR’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/heatwaveR/old/heatwaveR.Rcheck/heatwaveR’ - -``` -# ideal - -
- -* Version: 1.12.0 -* Source code: https://github.com/cran/ideal -* URL: https://github.com/federicomarini/ideal, https://federicomarini.github.io/ideal/ -* BugReports: https://github.com/federicomarini/ideal/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 197 - -Run `revdep_details(,"ideal")` for more info - -
- -## In both - -* checking whether package ‘ideal’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ideal/new/ideal.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘TxDb.Hsapiens.UCSC.hg38.knownGene’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ideal’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading - -groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘geneLenDataBase’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘ideal’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ideal/new/ideal.Rcheck/ideal’ - -``` -### CRAN - -``` -* installing *source* package ‘ideal’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading - -groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘geneLenDataBase’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘ideal’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ideal/old/ideal.Rcheck/ideal’ - -``` -# idefix - -
- -* Version: 0.4.3 -* Source code: https://github.com/cran/idefix -* URL: https://github.com/traets/idefix -* Date/Publication: 2020-04-07 14:40:05 UTC -* Number of recursive dependencies: 72 - -Run `revdep_details(,"idefix")` for more info - -
- -## In both - -* checking whether package ‘idefix’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/idefix/new/idefix.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘idefix’ ... -** package ‘idefix’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c InfoDes_cpp.cpp -o InfoDes_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c det_cpp.cpp -o det_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o idefix.so InfoDes_cpp.o RcppExports.o det_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [idefix.so] Error 1 -ERROR: compilation failed for package ‘idefix’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/idefix/new/idefix.Rcheck/idefix’ - -``` -### CRAN - -``` -* installing *source* package ‘idefix’ ... -** package ‘idefix’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c InfoDes_cpp.cpp -o InfoDes_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/idefix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c det_cpp.cpp -o det_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o idefix.so InfoDes_cpp.o RcppExports.o det_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [idefix.so] Error 1 -ERROR: compilation failed for package ‘idefix’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/idefix/old/idefix.Rcheck/idefix’ - -``` -# infercnv - -
- -* Version: 1.4.0 -* Source code: https://github.com/cran/infercnv -* URL: https://github.com/broadinstitute/inferCNV/wiki -* BugReports: https://github.com/broadinstitute/inferCNV/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 122 - -Run `revdep_details(,"infercnv")` for more info - -
- -## In both - -* checking whether package ‘infercnv’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/infercnv/new/infercnv.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘infercnv’ ... -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so - Reason: image not found -Execution halted -ERROR: lazy loading failed for package ‘infercnv’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/infercnv/new/infercnv.Rcheck/infercnv’ - -``` -### CRAN - -``` -* installing *source* package ‘infercnv’ ... -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/infercnv/rjags/libs/rjags.so - Reason: image not found -Execution halted -ERROR: lazy loading failed for package ‘infercnv’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/infercnv/old/infercnv.Rcheck/infercnv’ - -``` -# iRF - -
- -* Version: 2.0.0 -* Source code: https://github.com/cran/iRF -* URL: https://arxiv.org/abs/1706.08457 -* Date/Publication: 2017-07-26 04:57:45 UTC -* Number of recursive dependencies: 61 - -Run `revdep_details(,"iRF")` for more info - -
- -## In both - -* checking whether package ‘iRF’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/iRF/new/iRF.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘iRF’ ... -** package ‘iRF’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c ExportedFunctionsRIT.cpp -o ExportedFunctionsRIT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c classTree.c -o classTree.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c processNodes.cpp -o processNodes.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c regTree.c -o regTree.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c regrf.c -o regrf.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c rf.c -o rf.o -rf.c:492:17: warning: expression result unused [-Wunused-value] - + nrightimp[cl[n] - 1]++; - ^ ~~~~~~~~~~~~~~~~~~~~~~ -1 warning generated. -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rfsub.f -o rfsub.o -f951: Warning: Nonconforming tab character in column 1 of line 234 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 238 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 242 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 245 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 246 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 556 [-Wtabs] -rfsub.f:203:22: - - 203 | end if - | 1 -Warning: Nonconforming tab character at (1) [-Wtabs] -rfsub.f:283:35: - - 283 | totprob = totprob - mprob - | 1 -Warning: Nonconforming tab character at (1) [-Wtabs] -rfsub.f:122:35: - - 122 | bestsplit(kbuild) = dble(a(msplit,int(best))) - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rfsub.f:123:39: - - 123 | bestsplitnext(kbuild) = dble(a(msplit,int(best)+1)) - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rfsub.f:125:35: - - 125 | bestsplit(kbuild) = best - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rfsub.f:237:16: - - 237 | integer jj, subsetvar(mcard) - | 1 -Warning: Unused variable 'jj' declared at (1) [-Wunused-variable] -rfsub.f:535:33: - - 535 | integer ii, tmp, j, nn, dum - | 1 -Warning: Unused variable 'dum' declared at (1) [-Wunused-variable] -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/iRF/Rcpp/include' -I/usr/local/include -fPIC -O3 -c rfutils.c -o rfutils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iRF.so ExportedFunctionsRIT.o RcppExports.o classTree.o init.o processNodes.o regTree.o regrf.o rf.o rfsub.o rfutils.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [iRF.so] Error 1 -ERROR: compilation failed for package ‘iRF’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/iRF/new/iRF.Rcheck/iRF’ - -``` -### CRAN - -``` -* installing *source* package ‘iRF’ ... -** package ‘iRF’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c ExportedFunctionsRIT.cpp -o ExportedFunctionsRIT.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c classTree.c -o classTree.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c processNodes.cpp -o processNodes.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c regTree.c -o regTree.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c regrf.c -o regrf.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c rf.c -o rf.o -rf.c:492:17: warning: expression result unused [-Wunused-value] - + nrightimp[cl[n] - 1]++; - ^ ~~~~~~~~~~~~~~~~~~~~~~ -1 warning generated. -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rfsub.f -o rfsub.o -f951: Warning: Nonconforming tab character in column 1 of line 234 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 238 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 242 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 245 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 246 [-Wtabs] -f951: Warning: Nonconforming tab character in column 1 of line 556 [-Wtabs] -rfsub.f:203:22: - - 203 | end if - | 1 -Warning: Nonconforming tab character at (1) [-Wtabs] -rfsub.f:283:35: - - 283 | totprob = totprob - mprob - | 1 -Warning: Nonconforming tab character at (1) [-Wtabs] -rfsub.f:122:35: - - 122 | bestsplit(kbuild) = dble(a(msplit,int(best))) - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rfsub.f:123:39: - - 123 | bestsplitnext(kbuild) = dble(a(msplit,int(best)+1)) - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rfsub.f:125:35: - - 125 | bestsplit(kbuild) = best - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rfsub.f:237:16: - - 237 | integer jj, subsetvar(mcard) - | 1 -Warning: Unused variable 'jj' declared at (1) [-Wunused-variable] -rfsub.f:535:33: - - 535 | integer ii, tmp, j, nn, dum - | 1 -Warning: Unused variable 'dum' declared at (1) [-Wunused-variable] -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c rfutils.c -o rfutils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iRF.so ExportedFunctionsRIT.o RcppExports.o classTree.o init.o processNodes.o regTree.o regrf.o rf.o rfsub.o rfutils.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [iRF.so] Error 1 -ERROR: compilation failed for package ‘iRF’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/iRF/old/iRF.Rcheck/iRF’ - -``` -# joineRML - -
- -* Version: 0.4.4 -* Source code: https://github.com/cran/joineRML -* URL: https://github.com/petephilipson/joineRML -* BugReports: https://github.com/graemeleehickey/joineRML/issues -* Date/Publication: 2020-04-09 09:30:02 UTC -* Number of recursive dependencies: 88 - -Run `revdep_details(,"joineRML")` for more info - -
- -## In both - -* checking whether package ‘joineRML’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/joineRML/new/joineRML.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘joineRML’ ... -** package ‘joineRML’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expW.cpp -o expW.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gammaUpdate.cpp -o gammaUpdate.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gammaUpdate_approx.cpp -o gammaUpdate_approx.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c lambdaUpdate.cpp -o lambdaUpdate.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c mvnorm.cpp -o mvnorm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o joineRML.so RcppExports.o expW.o gammaUpdate.o gammaUpdate_approx.o init.o lambdaUpdate.o mvnorm.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [joineRML.so] Error 1 -ERROR: compilation failed for package ‘joineRML’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/joineRML/new/joineRML.Rcheck/joineRML’ - -``` -### CRAN - -``` -* installing *source* package ‘joineRML’ ... -** package ‘joineRML’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expW.cpp -o expW.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gammaUpdate.cpp -o gammaUpdate.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gammaUpdate_approx.cpp -o gammaUpdate_approx.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c lambdaUpdate.cpp -o lambdaUpdate.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/joineRML/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c mvnorm.cpp -o mvnorm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o joineRML.so RcppExports.o expW.o gammaUpdate.o gammaUpdate_approx.o init.o lambdaUpdate.o mvnorm.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [joineRML.so] Error 1 -ERROR: compilation failed for package ‘joineRML’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/joineRML/old/joineRML.Rcheck/joineRML’ - -``` -# lpirfs - -
- -* Version: 0.1.7 -* Source code: https://github.com/cran/lpirfs -* BugReports: https://github.com/adaemmerp/lpirfs/issues -* Date/Publication: 2019-11-25 09:20:06 UTC -* Number of recursive dependencies: 135 - -Run `revdep_details(,"lpirfs")` for more info - -
- -## In both - -* checking whether package ‘lpirfs’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/lpirfs/new/lpirfs.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘ggpubr’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘lpirfs’ ... -** package ‘lpirfs’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c get_vals_lagcrit.cpp -o get_vals_lagcrit.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c hp_filter.cpp -o hp_filter.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west.cpp -o newey_west.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west_pw.cpp -o newey_west_pw.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west_tsls.cpp -o newey_west_tsls.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ols_diagnost.cpp -o ols_diagnost.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c var_one.cpp -o var_one.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o lpirfs.so RcppExports.o get_vals_lagcrit.o hp_filter.o newey_west.o newey_west_pw.o newey_west_tsls.o ols_diagnost.o var_one.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [lpirfs.so] Error 1 -ERROR: compilation failed for package ‘lpirfs’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/lpirfs/new/lpirfs.Rcheck/lpirfs’ - -``` -### CRAN - -``` -* installing *source* package ‘lpirfs’ ... -** package ‘lpirfs’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c get_vals_lagcrit.cpp -o get_vals_lagcrit.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c hp_filter.cpp -o hp_filter.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west.cpp -o newey_west.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west_pw.cpp -o newey_west_pw.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c newey_west_tsls.cpp -o newey_west_tsls.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ols_diagnost.cpp -o ols_diagnost.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/lpirfs/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c var_one.cpp -o var_one.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o lpirfs.so RcppExports.o get_vals_lagcrit.o hp_filter.o newey_west.o newey_west_pw.o newey_west_tsls.o ols_diagnost.o var_one.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [lpirfs.so] Error 1 -ERROR: compilation failed for package ‘lpirfs’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/lpirfs/old/lpirfs.Rcheck/lpirfs’ - -``` -# maEndToEnd - -
- -* Version: -* Source code: ??? -* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr -* BugReports: https://github.com/tidyverse/dplyr/issues -* Number of recursive dependencies: 0 - -Run `revdep_details(,"")` for more info - -
- -## Error before installation - -### Devel - -``` - - There are binary versions available but the source versions are later: - binary source needs_compilation -openxlsx 4.1.4 4.1.5 TRUE -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - - -installing the source packages ‘hugene10sttranscriptcluster.db’, ‘pd.hugene.1.0.st.v1’, ‘reactome.db’ - - - -``` -### CRAN - -``` - - There are binary versions available but the source versions are later: - binary source needs_compilation -openxlsx 4.1.4 4.1.5 TRUE -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - - -installing the source packages ‘hugene10sttranscriptcluster.db’, ‘pd.hugene.1.0.st.v1’, ‘reactome.db’ - - - -``` -# metagene2 - -
- -* Version: 1.4.0 -* Source code: https://github.com/cran/metagene2 -* URL: https://github.com/ArnaudDroitLab/metagene2 -* BugReports: https://github.com/ArnaudDroitLab/metagene2/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 114 - -Run `revdep_details(,"metagene2")` for more info - -
- -## In both - -* checking whether package ‘metagene2’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/metagene2/new/metagene2.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘metagene2’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘DESeq’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘metagene2’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/metagene2/new/metagene2.Rcheck/metagene2’ - -``` -### CRAN - -``` -* installing *source* package ‘metagene2’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘DESeq’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘metagene2’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/metagene2/old/metagene2.Rcheck/metagene2’ - -``` -# mfbvar - -
- -* Version: 0.5.3 -* Source code: https://github.com/cran/mfbvar -* URL: https://github.com/ankargren/mfbvar -* BugReports: https://github.com/ankargren/mfbvar/issues -* Date/Publication: 2020-03-19 22:30:06 UTC -* Number of recursive dependencies: 82 - -Run `revdep_details(,"mfbvar")` for more info - -
- -## In both - -* checking whether package ‘mfbvar’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mfbvar/new/mfbvar.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘mfbvar’ ... -** package ‘mfbvar’ successfully unpacked and MD5 sums checked -** using staged installation -checking whether the C++ compiler works... yes -checking for C++ compiler default output file name... a.out -checking for suffix of executables... -checking whether we are cross compiling... no -checking for suffix of object files... o -checking whether we are using the GNU C++ compiler... yes -checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 accepts -g... yes -checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++11 -E -checking for macOS... found -configure: WARNING: OpenMP unavailable and turned off. -configure: creating ./config.status -config.status: creating src/Makevars -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c auxmix.cpp -o auxmix.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c builders.cpp -o builders.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c dl_reg.cpp -o dl_reg.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c kf_cpp.cpp -o kf_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c max_eig_cpp.cpp -o max_eig_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_csv.cpp -o mcmc_csv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_diffuse.cpp -o mcmc_diffuse.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_fsv.cpp -o mcmc_fsv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_iw.cpp -o mcmc_iw.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mvn_par.cpp -o mvn_par.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c plot_funs.cpp -o plot_funs.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c posteriors.cpp -o posteriors.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c progutils.cpp -o progutils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c progutils_fsv.cpp -o progutils_fsv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rgig.cpp -o rgig.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rmvn.cpp -o rmvn.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rnd_numbers.cpp -o rnd_numbers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rsimsm_adaptive_cv.cpp -o rsimsm_adaptive_cv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rsimsm_adaptive_univariate.cpp -o rsimsm_adaptive_univariate.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c smoothing.cpp -o smoothing.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_csv.cpp -o update_csv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_demean.cpp -o update_demean.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_dl.cpp -o update_dl.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_fsv.cpp -o update_fsv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_ng.cpp -o update_ng.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c utils.cpp -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mfbvar.so RcppExports.o auxmix.o builders.o dl_reg.o kf_cpp.o max_eig_cpp.o mcmc_csv.o mcmc_diffuse.o mcmc_fsv.o mcmc_iw.o mvn_par.o plot_funs.o posteriors.o progutils.o progutils_fsv.o rgig.o rmvn.o rnd_numbers.o rsimsm_adaptive_cv.o rsimsm_adaptive_univariate.o smoothing.o update_csv.o update_demean.o update_dl.o update_fsv.o update_ng.o utils.o -DARMA_DONT_USE_OPENMP -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [mfbvar.so] Error 1 -ERROR: compilation failed for package ‘mfbvar’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mfbvar/new/mfbvar.Rcheck/mfbvar’ - -``` -### CRAN - -``` -* installing *source* package ‘mfbvar’ ... -** package ‘mfbvar’ successfully unpacked and MD5 sums checked -** using staged installation -checking whether the C++ compiler works... yes -checking for C++ compiler default output file name... a.out -checking for suffix of executables... -checking whether we are cross compiling... no -checking for suffix of object files... o -checking whether we are using the GNU C++ compiler... yes -checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++11 accepts -g... yes -checking how to run the C++ preprocessor... clang++ -mmacosx-version-min=10.13 -std=gnu++11 -E -checking for macOS... found -configure: WARNING: OpenMP unavailable and turned off. -configure: creating ./config.status -config.status: creating src/Makevars -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c auxmix.cpp -o auxmix.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c builders.cpp -o builders.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c dl_reg.cpp -o dl_reg.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c kf_cpp.cpp -o kf_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c max_eig_cpp.cpp -o max_eig_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_csv.cpp -o mcmc_csv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_diffuse.cpp -o mcmc_diffuse.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_fsv.cpp -o mcmc_fsv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mcmc_iw.cpp -o mcmc_iw.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c mvn_par.cpp -o mvn_par.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c plot_funs.cpp -o plot_funs.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c posteriors.cpp -o posteriors.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c progutils.cpp -o progutils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c progutils_fsv.cpp -o progutils_fsv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rgig.cpp -o rgig.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rmvn.cpp -o rmvn.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rnd_numbers.cpp -o rnd_numbers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rsimsm_adaptive_cv.cpp -o rsimsm_adaptive_cv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c rsimsm_adaptive_univariate.cpp -o rsimsm_adaptive_univariate.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c smoothing.cpp -o smoothing.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_csv.cpp -o update_csv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_demean.cpp -o update_demean.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_dl.cpp -o update_dl.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_fsv.cpp -o update_fsv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c update_ng.cpp -o update_ng.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppProgress/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/stochvol/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mfbvar/RcppParallel/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -I../inst/include -fPIC -Wall -O3 -c utils.cpp -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mfbvar.so RcppExports.o auxmix.o builders.o dl_reg.o kf_cpp.o max_eig_cpp.o mcmc_csv.o mcmc_diffuse.o mcmc_fsv.o mcmc_iw.o mvn_par.o plot_funs.o posteriors.o progutils.o progutils_fsv.o rgig.o rmvn.o rnd_numbers.o rsimsm_adaptive_cv.o rsimsm_adaptive_univariate.o smoothing.o update_csv.o update_demean.o update_dl.o update_fsv.o update_ng.o utils.o -DARMA_DONT_USE_OPENMP -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [mfbvar.so] Error 1 -ERROR: compilation failed for package ‘mfbvar’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mfbvar/old/mfbvar.Rcheck/mfbvar’ - -``` -# miceFast - -
- -* Version: 0.5.1 -* Source code: https://github.com/cran/miceFast -* URL: https://github.com/Polkas/miceFast -* BugReports: https://github.com/Polkas/miceFast/issues -* Date/Publication: 2019-08-19 22:50:02 UTC -* Number of recursive dependencies: 104 - -Run `revdep_details(,"miceFast")` for more info - -
- -## In both - -* checking whether package ‘miceFast’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/miceFast/new/miceFast.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘miceFast’ ... -** package ‘miceFast’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c R_funs.cpp -o R_funs.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c corrData.cpp -o corrData.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_additfunc.cpp -o miceFast_additfunc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_class.cpp -o miceFast_class.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_quantmodels.cpp -o miceFast_quantmodels.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o miceFast.so R_funs.o RcppExports.o corrData.o miceFast_additfunc.o miceFast_class.o miceFast_quantmodels.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [miceFast.so] Error 1 -ERROR: compilation failed for package ‘miceFast’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/miceFast/new/miceFast.Rcheck/miceFast’ - -``` -### CRAN - -``` -* installing *source* package ‘miceFast’ ... -** package ‘miceFast’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c R_funs.cpp -o R_funs.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c corrData.cpp -o corrData.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_additfunc.cpp -o miceFast_additfunc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_class.cpp -o miceFast_class.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/miceFast/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c miceFast_quantmodels.cpp -o miceFast_quantmodels.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o miceFast.so R_funs.o RcppExports.o corrData.o miceFast_additfunc.o miceFast_class.o miceFast_quantmodels.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [miceFast.so] Error 1 -ERROR: compilation failed for package ‘miceFast’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/miceFast/old/miceFast.Rcheck/miceFast’ - -``` -# MixMatrix - -
- -* Version: 0.2.4 -* Source code: https://github.com/cran/MixMatrix -* URL: http://github.com/gzt/MixMatrix/, https://gzt.github.io/MixMatrix/ -* BugReports: http://github.com/gzt/MixMatrix/issues -* Date/Publication: 2019-11-14 22:30:03 UTC -* Number of recursive dependencies: 78 - -Run `revdep_details(,"MixMatrix")` for more info - -
- -## In both - -* checking whether package ‘MixMatrix’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/MixMatrix/new/MixMatrix.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘MixMatrix’ ... -** package ‘MixMatrix’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c posdefsqrt.cpp -o posdefsqrt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c stats.cpp -o stats.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MixMatrix.so RcppExports.o posdefsqrt.o stats.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [MixMatrix.so] Error 1 -ERROR: compilation failed for package ‘MixMatrix’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/MixMatrix/new/MixMatrix.Rcheck/MixMatrix’ - -``` -### CRAN - -``` -* installing *source* package ‘MixMatrix’ ... -** package ‘MixMatrix’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c posdefsqrt.cpp -o posdefsqrt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c stats.cpp -o stats.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/MixMatrix/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MixMatrix.so RcppExports.o posdefsqrt.o stats.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [MixMatrix.so] Error 1 -ERROR: compilation failed for package ‘MixMatrix’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/MixMatrix/old/MixMatrix.Rcheck/MixMatrix’ - -``` -# momentuHMM - -
- -* Version: 1.5.1 -* Source code: https://github.com/cran/momentuHMM -* URL: https://github.com/bmcclintock/momentuHMM -* BugReports: https://github.com/bmcclintock/momentuHMM/issues -* Date/Publication: 2020-03-06 06:00:02 UTC -* Number of recursive dependencies: 167 - -Run `revdep_details(,"momentuHMM")` for more info - -
- -## In both - -* checking whether package ‘momentuHMM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/momentuHMM/new/momentuHMM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘momentuHMM’ ... -** package ‘momentuHMM’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XBloop.cpp -o XBloop.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c getDM.cpp -o getDM.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c momentuHMM_init.c -o momentuHMM_init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c nLogLike.cpp -o nLogLike.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c trMatrix.cpp -o trMatrix.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o momentuHMM.so RcppExports.o XBloop.o getDM.o momentuHMM_init.o nLogLike.o trMatrix.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [momentuHMM.so] Error 1 -ERROR: compilation failed for package ‘momentuHMM’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/momentuHMM/new/momentuHMM.Rcheck/momentuHMM’ - -``` -### CRAN - -``` -* installing *source* package ‘momentuHMM’ ... -** package ‘momentuHMM’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XBloop.cpp -o XBloop.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c getDM.cpp -o getDM.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c momentuHMM_init.c -o momentuHMM_init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c nLogLike.cpp -o nLogLike.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/momentuHMM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c trMatrix.cpp -o trMatrix.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o momentuHMM.so RcppExports.o XBloop.o getDM.o momentuHMM_init.o nLogLike.o trMatrix.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [momentuHMM.so] Error 1 -ERROR: compilation failed for package ‘momentuHMM’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/momentuHMM/old/momentuHMM.Rcheck/momentuHMM’ - -``` -# MonetDBLite - -
- -* Version: 0.6.0 -* Source code: https://github.com/cran/MonetDBLite -* URL: https://github.com/hannesmuehleisen/MonetDBLite-R -* BugReports: https://github.com/hannesmuehleisen/MonetDBLite-R/issues -* Date/Publication: 2018-07-27 09:40:03 UTC -* Number of recursive dependencies: 99 - -Run `revdep_details(,"MonetDBLite")` for more info - -
- -## In both - -* R CMD check timed out - - -* checking installed package size ... NOTE - ``` - installed size is 5.8Mb - sub-directories of 1Mb or more: - libs 5.3Mb - ``` - -# morse - -
- -* Version: 3.2.5 -* Source code: https://github.com/cran/morse -* URL: https://cran.r-project.org/package=morse -* BugReports: https://github.com/pveber/morse -* Date/Publication: 2019-09-27 08:50:02 UTC -* Number of recursive dependencies: 73 - -Run `revdep_details(,"morse")` for more info - -
- -## In both - -* checking whether package ‘morse’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/morse/new/morse.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘morse’ ... -** package ‘morse’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so - Reason: image not found -Execution halted -ERROR: lazy loading failed for package ‘morse’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/morse/new/morse.Rcheck/morse’ - -``` -### CRAN - -``` -* installing *source* package ‘morse’ ... -** package ‘morse’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/morse/rjags/libs/rjags.so - Reason: image not found -Execution halted -ERROR: lazy loading failed for package ‘morse’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/morse/old/morse.Rcheck/morse’ - -``` -# mrgsolve - -
- -* Version: 0.10.1 -* Source code: https://github.com/cran/mrgsolve -* URL: https://github.com/metrumresearchgroup/mrgsolve -* BugReports: https://github.com/metrumresearchgroup/mrgsolve/issues -* Date/Publication: 2020-02-21 06:00:02 UTC -* Number of recursive dependencies: 52 - -Run `revdep_details(,"mrgsolve")` for more info - -
- -## In both - -* checking whether package ‘mrgsolve’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mrgsolve/new/mrgsolve.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘mrgsolve’ ... -** package ‘mrgsolve’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c LSODA.cpp -o LSODA.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c dataobject.cpp -o dataobject.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c datarecord.cpp -o datarecord.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c devtran.cpp -o devtran.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c housemodel-mread-source.cpp -o housemodel-mread-source.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c mrgsolve.cpp -o mrgsolve.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c mrgsolve_init.cpp -o mrgsolve_init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c odeproblem.cpp -o odeproblem.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mrgsolve.so LSODA.o RcppExports.o dataobject.o datarecord.o devtran.o housemodel-mread-source.o mrgsolve.o mrgsolve_init.o odeproblem.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [mrgsolve.so] Error 1 -ERROR: compilation failed for package ‘mrgsolve’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mrgsolve/new/mrgsolve.Rcheck/mrgsolve’ - -``` -### CRAN - -``` -* installing *source* package ‘mrgsolve’ ... -** package ‘mrgsolve’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c LSODA.cpp -o LSODA.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c dataobject.cpp -o dataobject.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c datarecord.cpp -o datarecord.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c devtran.cpp -o devtran.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c housemodel-mread-source.cpp -o housemodel-mread-source.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c mrgsolve.cpp -o mrgsolve.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c mrgsolve_init.cpp -o mrgsolve_init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I../inst/base -I. -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/mrgsolve/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I/usr/local/include -fPIC -Wall -O3 -c odeproblem.cpp -o odeproblem.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mrgsolve.so LSODA.o RcppExports.o dataobject.o datarecord.o devtran.o housemodel-mread-source.o mrgsolve.o mrgsolve_init.o odeproblem.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [mrgsolve.so] Error 1 -ERROR: compilation failed for package ‘mrgsolve’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/mrgsolve/old/mrgsolve.Rcheck/mrgsolve’ - -``` -# NobBS - -
- -* Version: 0.1.0 -* Source code: https://github.com/cran/NobBS -* Date/Publication: 2020-03-03 10:40:02 UTC -* Number of recursive dependencies: 25 - -Run `revdep_details(,"NobBS")` for more info - -
- -## In both - -* checking whether package ‘NobBS’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/NobBS/new/NobBS.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘NobBS’ ... -** package ‘NobBS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so - Reason: image not found -Execution halted -ERROR: lazy loading failed for package ‘NobBS’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/NobBS/new/NobBS.Rcheck/NobBS’ - -``` -### CRAN - -``` -* installing *source* package ‘NobBS’ ... -** package ‘NobBS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/NobBS/rjags/libs/rjags.so - Reason: image not found -Execution halted -ERROR: lazy loading failed for package ‘NobBS’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/NobBS/old/NobBS.Rcheck/NobBS’ - -``` -# NoRCE - -
- -* Version: -* Source code: ??? -* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr -* BugReports: https://github.com/tidyverse/dplyr/issues -* Number of recursive dependencies: 0 - -Run `revdep_details(,"")` for more info - -
- -## Error before installation - -### Devel - -``` - - There are binary versions available but the source versions are later: - binary source needs_compilation -rtracklayer 1.47.0 1.48.0 TRUE -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - - -installing the source packages ‘reactome.db’, ‘TxDb.Celegans.UCSC.ce11.refGene’, ‘TxDb.Dmelanogaster.UCSC.dm6.ensGene’, ‘TxDb.Drerio.UCSC.danRer10.refGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’, ‘TxDb.Hsapiens.UCSC.hg38.knownGene’, ‘TxDb.Mmusculus.UCSC.mm10.knownGene’, ‘TxDb.Rnorvegicus.UCSC.rn6.refGene’ - - - -``` -### CRAN - -``` - - There are binary versions available but the source versions are later: - binary source needs_compilation -rtracklayer 1.47.0 1.48.0 TRUE -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - - -installing the source packages ‘reactome.db’, ‘TxDb.Celegans.UCSC.ce11.refGene’, ‘TxDb.Dmelanogaster.UCSC.dm6.ensGene’, ‘TxDb.Drerio.UCSC.danRer10.refGene’, ‘TxDb.Hsapiens.UCSC.hg19.knownGene’, ‘TxDb.Hsapiens.UCSC.hg38.knownGene’, ‘TxDb.Mmusculus.UCSC.mm10.knownGene’, ‘TxDb.Rnorvegicus.UCSC.rn6.refGene’ - - - -``` -# openair - -
- -* Version: 2.7-2 -* Source code: https://github.com/cran/openair -* URL: http://davidcarslaw.github.io/openair/ -* BugReports: https://github.com/davidcarslaw/openair/issues -* Date/Publication: 2020-04-02 07:40:02 UTC -* Number of recursive dependencies: 47 - -Run `revdep_details(,"openair")` for more info - -
- -## In both - -* checking whether package ‘openair’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/openair/new/openair.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘openair’ ... -** package ‘openair’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/openair/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c cluster.cpp -o cluster.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/openair/Rcpp/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/openair/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c rolling.cpp -o rolling.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o openair.so cluster.o init.o rolling.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [openair.so] Error 1 -ERROR: compilation failed for package ‘openair’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/openair/new/openair.Rcheck/openair’ - -``` -### CRAN - -``` -* installing *source* package ‘openair’ ... -** package ‘openair’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c cluster.cpp -o cluster.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c rolling.cpp -o rolling.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o openair.so cluster.o init.o rolling.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [openair.so] Error 1 -ERROR: compilation failed for package ‘openair’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/openair/old/openair.Rcheck/openair’ - -``` -# partition - -
- -* Version: 0.1.1 -* Source code: https://github.com/cran/partition -* URL: https://uscbiostats.github.io/partition/, https://github.com/USCbiostats/partition -* BugReports: https://github.com/USCbiostats/partition/issues -* Date/Publication: 2019-12-12 06:30:03 UTC -* Number of recursive dependencies: 83 - -Run `revdep_details(,"partition")` for more info - -
- -## In both - -* checking whether package ‘partition’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/partition/new/partition.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘partition’ ... -** package ‘partition’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c corr.cpp -o corr.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c icc.cpp -o icc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c kmeans.cpp -o kmeans.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c minr2.cpp -o minr2.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pca.cpp -o pca.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c reduce_partition.cpp -o reduce_partition.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o partition.so RcppExports.o corr.o icc.o kmeans.o minr2.o pca.o reduce_partition.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [partition.so] Error 1 -ERROR: compilation failed for package ‘partition’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/partition/new/partition.Rcheck/partition’ - -``` -### CRAN - -``` -* installing *source* package ‘partition’ ... -** package ‘partition’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c corr.cpp -o corr.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c icc.cpp -o icc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c kmeans.cpp -o kmeans.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c minr2.cpp -o minr2.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pca.cpp -o pca.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/partition/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c reduce_partition.cpp -o reduce_partition.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o partition.so RcppExports.o corr.o icc.o kmeans.o minr2.o pca.o reduce_partition.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [partition.so] Error 1 -ERROR: compilation failed for package ‘partition’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/partition/old/partition.Rcheck/partition’ - -``` -# pccc - -
- -* Version: 1.0.3 -* Source code: https://github.com/cran/pccc -* URL: https://github.com/CUD2V/pccc -* BugReports: https://github.com/CUD2V/pccc/issues -* Date/Publication: 2019-08-21 21:50:06 UTC -* Number of recursive dependencies: 60 - -Run `revdep_details(,"pccc")` for more info - -
- -## In both - -* checking whether package ‘pccc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pccc/new/pccc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pccc’ ... -** package ‘pccc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pccc/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pccc/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c ccc.cpp -o ccc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pccc/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c get_codes.cpp -o get_codes.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pccc/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c pccc.cpp -o pccc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pccc.so RcppExports.o ccc.o get_codes.o pccc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [pccc.so] Error 1 -ERROR: compilation failed for package ‘pccc’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pccc/new/pccc.Rcheck/pccc’ - -``` -### CRAN - -``` -* installing *source* package ‘pccc’ ... -** package ‘pccc’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c ccc.cpp -o ccc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c get_codes.cpp -o get_codes.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -I../inst/include -DARMA_64BIT_WORD -fPIC -Wall -O3 -c pccc.cpp -o pccc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pccc.so RcppExports.o ccc.o get_codes.o pccc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [pccc.so] Error 1 -ERROR: compilation failed for package ‘pccc’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pccc/old/pccc.Rcheck/pccc’ - -``` -# phase1PRMD - -
- -* Version: 1.0.2 -* Source code: https://github.com/cran/phase1PRMD -* Date/Publication: 2020-03-09 06:50:03 UTC -* Number of recursive dependencies: 84 - -Run `revdep_details(,"phase1PRMD")` for more info - -
- -## In both - -* checking whether package ‘phase1PRMD’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phase1PRMD/new/phase1PRMD.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘phase1PRMD’ ... -** package ‘phase1PRMD’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so - Reason: image not found -Execution halted -ERROR: lazy loading failed for package ‘phase1PRMD’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phase1PRMD/new/phase1PRMD.Rcheck/phase1PRMD’ - -``` -### CRAN - -``` -* installing *source* package ‘phase1PRMD’ ... -** package ‘phase1PRMD’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phase1PRMD/rjags/libs/rjags.so - Reason: image not found -Execution halted -ERROR: lazy loading failed for package ‘phase1PRMD’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phase1PRMD/old/phase1PRMD.Rcheck/phase1PRMD’ - -``` -# phenofit - -
- -* Version: 0.2.7 -* Source code: https://github.com/cran/phenofit -* URL: https://github.com/kongdd/phenofit -* BugReports: https://github.com/kongdd/phenofit/issues -* Date/Publication: 2020-04-02 11:40:03 UTC -* Number of recursive dependencies: 89 - -Run `revdep_details(,"phenofit")` for more info - -
- -## In both - -* checking whether package ‘phenofit’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phenofit/new/phenofit.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘phenofit’ ... -** package ‘phenofit’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c doubleLogistics.cpp -o doubleLogistics.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c f_goal.cpp -o f_goal.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c register_routines.c -o register_routines.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c season.cpp -o season.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c smooth_wSG.cpp -o smooth_wSG.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c smooth_whit.c -o smooth_whit.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wTSM.cpp -o wTSM.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o phenofit.so RcppExports.o doubleLogistics.o f_goal.o register_routines.o season.o smooth_wSG.o smooth_whit.o wTSM.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [phenofit.so] Error 1 -ERROR: compilation failed for package ‘phenofit’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phenofit/new/phenofit.Rcheck/phenofit’ - -``` -### CRAN - -``` -* installing *source* package ‘phenofit’ ... -** package ‘phenofit’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c doubleLogistics.cpp -o doubleLogistics.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c f_goal.cpp -o f_goal.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c register_routines.c -o register_routines.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c season.cpp -o season.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c smooth_wSG.cpp -o smooth_wSG.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c smooth_whit.c -o smooth_whit.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phenofit/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wTSM.cpp -o wTSM.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o phenofit.so RcppExports.o doubleLogistics.o f_goal.o register_routines.o season.o smooth_wSG.o smooth_whit.o wTSM.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [phenofit.so] Error 1 -ERROR: compilation failed for package ‘phenofit’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phenofit/old/phenofit.Rcheck/phenofit’ - -``` -# phyr - -
- -* Version: 1.0.2 -* Source code: https://github.com/cran/phyr -* URL: https://github.com/daijiang/phyr/ -* BugReports: https://github.com/daijiang/phyr/issues -* Date/Publication: 2019-11-13 22:20:02 UTC -* Number of recursive dependencies: 134 - -Run `revdep_details(,"phyr")` for more info - -
- -## In both - -* checking whether package ‘phyr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phyr/new/phyr.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘INLA’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘phyr’ ... -** package ‘phyr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c binaryPGLMM.cpp -o binaryPGLMM.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c cor_phylo.cpp -o cor_phylo.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pcd.cpp -o pcd.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pglmm_binary.cpp -o pglmm_binary.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pglmm_gaussian.cpp -o pglmm_gaussian.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c psv.cpp -o psv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o phyr.so RcppExports.o binaryPGLMM.o cor_phylo.o pcd.o pglmm_binary.o pglmm_gaussian.o psv.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [phyr.so] Error 1 -ERROR: compilation failed for package ‘phyr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phyr/new/phyr.Rcheck/phyr’ - -``` -### CRAN - -``` -* installing *source* package ‘phyr’ ... -** package ‘phyr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c binaryPGLMM.cpp -o binaryPGLMM.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c cor_phylo.cpp -o cor_phylo.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pcd.cpp -o pcd.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pglmm_binary.cpp -o pglmm_binary.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pglmm_gaussian.cpp -o pglmm_gaussian.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/phyr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c psv.cpp -o psv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o phyr.so RcppExports.o binaryPGLMM.o cor_phylo.o pcd.o pglmm_binary.o pglmm_gaussian.o psv.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [phyr.so] Error 1 -ERROR: compilation failed for package ‘phyr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/phyr/old/phyr.Rcheck/phyr’ - -``` -# PLNmodels - -
- -* Version: 0.9.5 -* Source code: https://github.com/cran/PLNmodels -* URL: https://jchiquet.github.io/PLNmodels/ -* BugReports: https://github.com/jchiquet/PLNmodels/issues -* Date/Publication: 2020-01-27 21:10:02 UTC -* Number of recursive dependencies: 112 - -Run `revdep_details(,"PLNmodels")` for more info - -
- -## In both - -* checking whether package ‘PLNmodels’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PLNmodels/new/PLNmodels.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘PLNmodels’ ... -** package ‘PLNmodels’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c call_optimizers.cpp -o call_optimizers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c gradients.cpp -o gradients.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c nlopt_utils.cpp -o nlopt_utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c optimizers.cpp -o optimizers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PLNmodels.so RcppExports.o call_optimizers.o gradients.o nlopt_utils.o optimizers.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [PLNmodels.so] Error 1 -ERROR: compilation failed for package ‘PLNmodels’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PLNmodels/new/PLNmodels.Rcheck/PLNmodels’ - -``` -### CRAN - -``` -* installing *source* package ‘PLNmodels’ ... -** package ‘PLNmodels’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c call_optimizers.cpp -o call_optimizers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c gradients.cpp -o gradients.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c nlopt_utils.cpp -o nlopt_utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PLNmodels/nloptr/include' -I/usr/local/include -fPIC -Wall -O3 -c optimizers.cpp -o optimizers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PLNmodels.so RcppExports.o call_optimizers.o gradients.o nlopt_utils.o optimizers.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [PLNmodels.so] Error 1 -ERROR: compilation failed for package ‘PLNmodels’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PLNmodels/old/PLNmodels.Rcheck/PLNmodels’ - -``` -# pomp - -
- -* Version: 2.8 -* Source code: https://github.com/cran/pomp -* URL: https://kingaa.github.io/pomp/ -* BugReports: https://github.com/kingaa/pomp/issues/ -* Date/Publication: 2020-04-10 20:10:02 UTC -* Number of recursive dependencies: 66 - -Run `revdep_details(,"pomp")` for more info - -
- -## In both - -* checking whether package ‘pomp’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pomp/new/pomp.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pomp’ ... -** package ‘pomp’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bspline.c -o bspline.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c distributions.c -o distributions.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dmeasure.c -o dmeasure.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dprior.c -o dprior.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dprocess.c -o dprocess.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c euler.c -o euler.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gompertz.c -o gompertz.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lookup_table.c -o lookup_table.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mif2.c -o mif2.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ou2.c -o ou2.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c partrans.c -o partrans.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pfilter.c -o pfilter.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pomp_fun.c -o pomp_fun.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe.c -o probe.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_acf.c -o probe_acf.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_marginal.c -o probe_marginal.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_nlar.c -o probe_nlar.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c resample.c -o resample.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rinit.c -o rinit.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rmeasure.c -o rmeasure.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rprior.c -o rprior.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rprocess.c -o rprocess.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c simulate.c -o simulate.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c skeleton.c -o skeleton.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sobolseq.c -o sobolseq.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ssa.c -o ssa.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c synth_lik.c -o synth_lik.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c trajectory.c -o trajectory.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c transformations.c -o transformations.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c userdata.c -o userdata.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pomp.so bspline.o distributions.o dmeasure.o dprior.o dprocess.o euler.o gompertz.o init.o lookup_table.o mif2.o ou2.o partrans.o pfilter.o pomp_fun.o probe.o probe_acf.o probe_marginal.o probe_nlar.o resample.o rinit.o rmeasure.o rprior.o rprocess.o simulate.o skeleton.o sobolseq.o ssa.o synth_lik.o trajectory.o transformations.o userdata.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [pomp.so] Error 1 -ERROR: compilation failed for package ‘pomp’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pomp/new/pomp.Rcheck/pomp’ - -``` -### CRAN - -``` -* installing *source* package ‘pomp’ ... -** package ‘pomp’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c bspline.c -o bspline.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c distributions.c -o distributions.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dmeasure.c -o dmeasure.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dprior.c -o dprior.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c dprocess.c -o dprocess.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c euler.c -o euler.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c gompertz.c -o gompertz.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c lookup_table.c -o lookup_table.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c mif2.c -o mif2.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ou2.c -o ou2.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c partrans.c -o partrans.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pfilter.c -o pfilter.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c pomp_fun.c -o pomp_fun.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe.c -o probe.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_acf.c -o probe_acf.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_marginal.c -o probe_marginal.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c probe_nlar.c -o probe_nlar.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c resample.c -o resample.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rinit.c -o rinit.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rmeasure.c -o rmeasure.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rprior.c -o rprior.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c rprocess.c -o rprocess.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c simulate.c -o simulate.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c skeleton.c -o skeleton.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c sobolseq.c -o sobolseq.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c ssa.c -o ssa.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c synth_lik.c -o synth_lik.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c trajectory.c -o trajectory.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c transformations.c -o transformations.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c userdata.c -o userdata.o -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pomp.so bspline.o distributions.o dmeasure.o dprior.o dprocess.o euler.o gompertz.o init.o lookup_table.o mif2.o ou2.o partrans.o pfilter.o pomp_fun.o probe.o probe_acf.o probe_marginal.o probe_nlar.o resample.o rinit.o rmeasure.o rprior.o rprocess.o simulate.o skeleton.o sobolseq.o ssa.o synth_lik.o trajectory.o transformations.o userdata.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [pomp.so] Error 1 -ERROR: compilation failed for package ‘pomp’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pomp/old/pomp.Rcheck/pomp’ - -``` -# PPforest - -
- -* Version: 0.1.1 -* Source code: https://github.com/cran/PPforest -* URL: https://github.com/natydasilva/PPforest -* Date/Publication: 2018-06-11 18:46:17 UTC -* Number of recursive dependencies: 88 - -Run `revdep_details(,"PPforest")` for more info - -
- -## In both - -* checking whether package ‘PPforest’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PPforest/new/PPforest.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘PPforest’ ... -** package ‘PPforest’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c optim_index.cpp -o optim_index.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PPforest.so RcppExports.o optim_index.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [PPforest.so] Error 1 -ERROR: compilation failed for package ‘PPforest’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PPforest/new/PPforest.Rcheck/PPforest’ - -``` -### CRAN - -``` -* installing *source* package ‘PPforest’ ... -** package ‘PPforest’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/PPforest/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c optim_index.cpp -o optim_index.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PPforest.so RcppExports.o optim_index.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [PPforest.so] Error 1 -ERROR: compilation failed for package ‘PPforest’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PPforest/old/PPforest.Rcheck/PPforest’ - -``` -# pRoloc - -
- -* Version: 1.28.0 -* Source code: https://github.com/cran/pRoloc -* URL: https://github.com/lgatto/pRoloc -* BugReports: https://github.com/lgatto/pRoloc/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 218 - -Run `revdep_details(,"pRoloc")` for more info - -
- -## In both - -* checking whether package ‘pRoloc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pRoloc/new/pRoloc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘pRoloc’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dmvtCpp.cpp -o dmvtCpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pRoloc.cpp -o pRoloc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pRoloc.so RcppExports.o dmvtCpp.o pRoloc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [pRoloc.so] Error 1 -ERROR: compilation failed for package ‘pRoloc’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pRoloc/new/pRoloc.Rcheck/pRoloc’ - -``` -### CRAN - -``` -* installing *source* package ‘pRoloc’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dmvtCpp.cpp -o dmvtCpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/pRoloc/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pRoloc.cpp -o pRoloc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pRoloc.so RcppExports.o dmvtCpp.o pRoloc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [pRoloc.so] Error 1 -ERROR: compilation failed for package ‘pRoloc’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/pRoloc/old/pRoloc.Rcheck/pRoloc’ - -``` -# psychmeta - -
- -* Version: 2.3.8 -* Source code: https://github.com/cran/psychmeta -* BugReports: https://github.com/psychmeta/psychmeta/issues -* Date/Publication: 2020-04-22 05:20:02 UTC -* Number of recursive dependencies: 85 - -Run `revdep_details(,"psychmeta")` for more info - -
- -## In both - -* checking whether package ‘psychmeta’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychmeta/new/psychmeta.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘psychmeta’ ... -** package ‘psychmeta’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so - Reason: image not found -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘psychmeta’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychmeta/new/psychmeta.Rcheck/psychmeta’ - -``` -### CRAN - -``` -* installing *source* package ‘psychmeta’ ... -** package ‘psychmeta’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychmeta/gmm/libs/gmm.so - Reason: image not found -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘psychmeta’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychmeta/old/psychmeta.Rcheck/psychmeta’ - -``` -# psychonetrics - -
- -* Version: 0.7.1 -* Source code: https://github.com/cran/psychonetrics -* URL: http://psychonetrics.org/ -* BugReports: https://github.com/SachaEpskamp/psychonetrics/issues -* Date/Publication: 2020-04-15 09:20:02 UTC -* Number of recursive dependencies: 153 - -Run `revdep_details(,"psychonetrics")` for more info - -
- -## In both - -* checking whether package ‘psychonetrics’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychonetrics/new/psychonetrics.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘psychonetrics’ ... -** package ‘psychonetrics’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_RcppHelpers.cpp -o 02_algebrahelpers_RcppHelpers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_kronecker.cpp -o 02_algebrahelpers_kronecker.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_modelMatrix_cpp.cpp -o 02_algebrahelpers_modelMatrix_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 03_modelformation_formModelMatrices_cpp.cpp -o 03_modelformation_formModelMatrices_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 03_modelformation_impliedcovstructures.cpp -o 03_modelformation_impliedcovstructures.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalFit_FisherInformation_cpp.cpp -o 04_generalFit_FisherInformation_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalFit_gradient_cpp.cpp -o 04_generalFit_gradient_cpp.o -04_generalFit_gradient_cpp.cpp:39:10: warning: local variable 'grad' will be copied despite being returned by name [-Wreturn-std-move] - return grad; - ^~~~ -04_generalFit_gradient_cpp.cpp:39:10: note: call 'std::move' explicitly to avoid copying - return grad; - ^~~~ - std::move(grad) -04_generalFit_gradient_cpp.cpp:53:10: warning: local variable 'grad' will be copied despite being returned by name [-Wreturn-std-move] - return grad; - ^~~~ -04_generalFit_gradient_cpp.cpp:53:10: note: call 'std::move' explicitly to avoid copying - return grad; - ^~~~ - std::move(grad) -2 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_fitfunction_cpp.cpp -o 04_generalfit_fitfunction_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_implied_and_prepare.cpp -o 04_generalfit_implied_and_prepare.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_loglik_fimlcpp.cpp -o 04_generalfit_loglik_fimlcpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_psychonetrics_BFGS.cpp -o 04_generalfit_psychonetrics_BFGS.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_expected_Hessian_Gauss_cpp.cpp -o 05_MLestimator_expected_Hessian_Gauss_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_fit_Gauss_cpp.cpp -o 05_MLestimator_fit_Gauss_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_fit_Ising.cpp -o 05_MLestimator_fit_Ising.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_gradient_Gauss_cpp.cpp -o 05_MLestimator_gradient_Gauss_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_gradient_Ising_cpp.cpp -o 05_MLestimator_gradient_Ising_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_DWLS_Wmat.cpp -o 06_DWLS_Wmat.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_expectedHessian_cpp.cpp -o 06_ULS_expectedHessian_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_fitfunction_cpp.cpp -o 06_ULS_fitfunction_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_gradient_cpp.cpp -o 06_ULS_gradient_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_WLS_Wmat.cpp -o 06_WLS_Wmat.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_expected_hessian_gauss_cppversion.cpp -o 07_FIMLestimator_expected_hessian_gauss_cppversion.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_fitfunction_cppversion.cpp -o 07_FIMLestimator_fitfunction_cppversion.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_jacobian_gauss.cpp -o 07_FIMLestimator_jacobian_gauss.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 10_ordinal_covPrepare.cpp -o 10_ordinal_covPrepare.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 10_ordinal_cppFuns.cpp -o 10_ordinal_cppFuns.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_derivatives_cpp.cpp -o 14_varcov_derivatives_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_implied_cpp.cpp -o 14_varcov_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_prepare_cpp.cpp -o 14_varcov_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_derivatives_cpp.cpp -o 15_lvm_derivatives_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_implied_cpp.cpp -o 15_lvm_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_prepare_cpp.cpp -o 15_lvm_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_derivatives_cpp.cpp -o 16_var1_derivatives_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_implied_cpp.cpp -o 16_var1_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_prepare_cpp.cpp -o 16_var1_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_derivatives_cpp.cpp -o 18_dlvm1_derivatives_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_implied_cpp.cpp -o 18_dlvm1_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_prepare_cpp.cpp -o 18_dlvm1_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_derivatives.cpp -o 19_tsdlvm1_derivatives.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_implied_cpp.cpp -o 19_tsdlvm1_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_prepare_cpp.cpp -o 19_tsdlvm1_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_derivatives_cpp.cpp -o 20_meta_varcov_derivatives_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_implied.cpp -o 20_meta_varcov_implied.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_prepare_cpp.cpp -o 20_meta_varcov_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_derivatives.cpp -o 21_Ising_derivatives.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_expectedHessian.cpp -o 21_Ising_expectedHessian.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_helperfunctions.cpp -o 21_Ising_helperfunctions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_implied_cpp.cpp -o 21_Ising_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_prepare_cpp.cpp -o 21_Ising_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_derivatives.cpp -o 22_ml_lvm_derivatives.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_implied_cpp.cpp -o 22_ml_lvm_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_prepare_cpp.cpp -o 22_ml_lvm_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansion_updateModel_cpp.cpp -o b_modelexpansion_updateModel_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansions_addMIs_cpp.cpp -o b_modelexpansions_addMIs_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansions_addSEs_cpp.cpp -o b_modelexpansions_addSEs_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o psychonetrics.so 02_algebrahelpers_RcppHelpers.o 02_algebrahelpers_kronecker.o 02_algebrahelpers_modelMatrix_cpp.o 03_modelformation_formModelMatrices_cpp.o 03_modelformation_impliedcovstructures.o 04_generalFit_FisherInformation_cpp.o 04_generalFit_gradient_cpp.o 04_generalfit_fitfunction_cpp.o 04_generalfit_implied_and_prepare.o 04_generalfit_loglik_fimlcpp.o 04_generalfit_psychonetrics_BFGS.o 05_MLestimator_expected_Hessian_Gauss_cpp.o 05_MLestimator_fit_Gauss_cpp.o 05_MLestimator_fit_Ising.o 05_MLestimator_gradient_Gauss_cpp.o 05_MLestimator_gradient_Ising_cpp.o 06_DWLS_Wmat.o 06_ULS_expectedHessian_cpp.o 06_ULS_fitfunction_cpp.o 06_ULS_gradient_cpp.o 06_WLS_Wmat.o 07_FIMLestimator_expected_hessian_gauss_cppversion.o 07_FIMLestimator_fitfunction_cppversion.o 07_FIMLestimator_jacobian_gauss.o 10_ordinal_covPrepare.o 10_ordinal_cppFuns.o 14_varcov_derivatives_cpp.o 14_varcov_implied_cpp.o 14_varcov_prepare_cpp.o 15_lvm_derivatives_cpp.o 15_lvm_implied_cpp.o 15_lvm_prepare_cpp.o 16_var1_derivatives_cpp.o 16_var1_implied_cpp.o 16_var1_prepare_cpp.o 18_dlvm1_derivatives_cpp.o 18_dlvm1_implied_cpp.o 18_dlvm1_prepare_cpp.o 19_tsdlvm1_derivatives.o 19_tsdlvm1_implied_cpp.o 19_tsdlvm1_prepare_cpp.o 20_meta_varcov_derivatives_cpp.o 20_meta_varcov_implied.o 20_meta_varcov_prepare_cpp.o 21_Ising_derivatives.o 21_Ising_expectedHessian.o 21_Ising_helperfunctions.o 21_Ising_implied_cpp.o 21_Ising_prepare_cpp.o 22_ml_lvm_derivatives.o 22_ml_lvm_implied_cpp.o 22_ml_lvm_prepare_cpp.o RcppExports.o b_modelexpansion_updateModel_cpp.o b_modelexpansions_addMIs_cpp.o b_modelexpansions_addSEs_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [psychonetrics.so] Error 1 -ERROR: compilation failed for package ‘psychonetrics’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychonetrics/new/psychonetrics.Rcheck/psychonetrics’ - -``` -### CRAN - -``` -* installing *source* package ‘psychonetrics’ ... -** package ‘psychonetrics’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_RcppHelpers.cpp -o 02_algebrahelpers_RcppHelpers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_kronecker.cpp -o 02_algebrahelpers_kronecker.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 02_algebrahelpers_modelMatrix_cpp.cpp -o 02_algebrahelpers_modelMatrix_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 03_modelformation_formModelMatrices_cpp.cpp -o 03_modelformation_formModelMatrices_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 03_modelformation_impliedcovstructures.cpp -o 03_modelformation_impliedcovstructures.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalFit_FisherInformation_cpp.cpp -o 04_generalFit_FisherInformation_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalFit_gradient_cpp.cpp -o 04_generalFit_gradient_cpp.o -04_generalFit_gradient_cpp.cpp:39:10: warning: local variable 'grad' will be copied despite being returned by name [-Wreturn-std-move] - return grad; - ^~~~ -04_generalFit_gradient_cpp.cpp:39:10: note: call 'std::move' explicitly to avoid copying - return grad; - ^~~~ - std::move(grad) -04_generalFit_gradient_cpp.cpp:53:10: warning: local variable 'grad' will be copied despite being returned by name [-Wreturn-std-move] - return grad; - ^~~~ -04_generalFit_gradient_cpp.cpp:53:10: note: call 'std::move' explicitly to avoid copying - return grad; - ^~~~ - std::move(grad) -2 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_fitfunction_cpp.cpp -o 04_generalfit_fitfunction_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_implied_and_prepare.cpp -o 04_generalfit_implied_and_prepare.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_loglik_fimlcpp.cpp -o 04_generalfit_loglik_fimlcpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 04_generalfit_psychonetrics_BFGS.cpp -o 04_generalfit_psychonetrics_BFGS.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_expected_Hessian_Gauss_cpp.cpp -o 05_MLestimator_expected_Hessian_Gauss_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_fit_Gauss_cpp.cpp -o 05_MLestimator_fit_Gauss_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_fit_Ising.cpp -o 05_MLestimator_fit_Ising.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_gradient_Gauss_cpp.cpp -o 05_MLestimator_gradient_Gauss_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 05_MLestimator_gradient_Ising_cpp.cpp -o 05_MLestimator_gradient_Ising_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_DWLS_Wmat.cpp -o 06_DWLS_Wmat.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_expectedHessian_cpp.cpp -o 06_ULS_expectedHessian_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_fitfunction_cpp.cpp -o 06_ULS_fitfunction_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_ULS_gradient_cpp.cpp -o 06_ULS_gradient_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 06_WLS_Wmat.cpp -o 06_WLS_Wmat.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_expected_hessian_gauss_cppversion.cpp -o 07_FIMLestimator_expected_hessian_gauss_cppversion.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_fitfunction_cppversion.cpp -o 07_FIMLestimator_fitfunction_cppversion.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 07_FIMLestimator_jacobian_gauss.cpp -o 07_FIMLestimator_jacobian_gauss.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 10_ordinal_covPrepare.cpp -o 10_ordinal_covPrepare.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 10_ordinal_cppFuns.cpp -o 10_ordinal_cppFuns.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_derivatives_cpp.cpp -o 14_varcov_derivatives_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_implied_cpp.cpp -o 14_varcov_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 14_varcov_prepare_cpp.cpp -o 14_varcov_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_derivatives_cpp.cpp -o 15_lvm_derivatives_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_implied_cpp.cpp -o 15_lvm_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 15_lvm_prepare_cpp.cpp -o 15_lvm_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_derivatives_cpp.cpp -o 16_var1_derivatives_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_implied_cpp.cpp -o 16_var1_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 16_var1_prepare_cpp.cpp -o 16_var1_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_derivatives_cpp.cpp -o 18_dlvm1_derivatives_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_implied_cpp.cpp -o 18_dlvm1_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 18_dlvm1_prepare_cpp.cpp -o 18_dlvm1_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_derivatives.cpp -o 19_tsdlvm1_derivatives.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_implied_cpp.cpp -o 19_tsdlvm1_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 19_tsdlvm1_prepare_cpp.cpp -o 19_tsdlvm1_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_derivatives_cpp.cpp -o 20_meta_varcov_derivatives_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_implied.cpp -o 20_meta_varcov_implied.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 20_meta_varcov_prepare_cpp.cpp -o 20_meta_varcov_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_derivatives.cpp -o 21_Ising_derivatives.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_expectedHessian.cpp -o 21_Ising_expectedHessian.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_helperfunctions.cpp -o 21_Ising_helperfunctions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_implied_cpp.cpp -o 21_Ising_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 21_Ising_prepare_cpp.cpp -o 21_Ising_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_derivatives.cpp -o 22_ml_lvm_derivatives.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_implied_cpp.cpp -o 22_ml_lvm_implied_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c 22_ml_lvm_prepare_cpp.cpp -o 22_ml_lvm_prepare_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansion_updateModel_cpp.cpp -o b_modelexpansion_updateModel_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansions_addMIs_cpp.cpp -o b_modelexpansions_addMIs_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_USE_OPENMP -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/pbv/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/psychonetrics/roptim/include' -I/usr/local/include -fPIC -Wall -O3 -c b_modelexpansions_addSEs_cpp.cpp -o b_modelexpansions_addSEs_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o psychonetrics.so 02_algebrahelpers_RcppHelpers.o 02_algebrahelpers_kronecker.o 02_algebrahelpers_modelMatrix_cpp.o 03_modelformation_formModelMatrices_cpp.o 03_modelformation_impliedcovstructures.o 04_generalFit_FisherInformation_cpp.o 04_generalFit_gradient_cpp.o 04_generalfit_fitfunction_cpp.o 04_generalfit_implied_and_prepare.o 04_generalfit_loglik_fimlcpp.o 04_generalfit_psychonetrics_BFGS.o 05_MLestimator_expected_Hessian_Gauss_cpp.o 05_MLestimator_fit_Gauss_cpp.o 05_MLestimator_fit_Ising.o 05_MLestimator_gradient_Gauss_cpp.o 05_MLestimator_gradient_Ising_cpp.o 06_DWLS_Wmat.o 06_ULS_expectedHessian_cpp.o 06_ULS_fitfunction_cpp.o 06_ULS_gradient_cpp.o 06_WLS_Wmat.o 07_FIMLestimator_expected_hessian_gauss_cppversion.o 07_FIMLestimator_fitfunction_cppversion.o 07_FIMLestimator_jacobian_gauss.o 10_ordinal_covPrepare.o 10_ordinal_cppFuns.o 14_varcov_derivatives_cpp.o 14_varcov_implied_cpp.o 14_varcov_prepare_cpp.o 15_lvm_derivatives_cpp.o 15_lvm_implied_cpp.o 15_lvm_prepare_cpp.o 16_var1_derivatives_cpp.o 16_var1_implied_cpp.o 16_var1_prepare_cpp.o 18_dlvm1_derivatives_cpp.o 18_dlvm1_implied_cpp.o 18_dlvm1_prepare_cpp.o 19_tsdlvm1_derivatives.o 19_tsdlvm1_implied_cpp.o 19_tsdlvm1_prepare_cpp.o 20_meta_varcov_derivatives_cpp.o 20_meta_varcov_implied.o 20_meta_varcov_prepare_cpp.o 21_Ising_derivatives.o 21_Ising_expectedHessian.o 21_Ising_helperfunctions.o 21_Ising_implied_cpp.o 21_Ising_prepare_cpp.o 22_ml_lvm_derivatives.o 22_ml_lvm_implied_cpp.o 22_ml_lvm_prepare_cpp.o RcppExports.o b_modelexpansion_updateModel_cpp.o b_modelexpansions_addMIs_cpp.o b_modelexpansions_addSEs_cpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [psychonetrics.so] Error 1 -ERROR: compilation failed for package ‘psychonetrics’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/psychonetrics/old/psychonetrics.Rcheck/psychonetrics’ - -``` -# qgraph - -
- -* Version: 1.6.5 -* Source code: https://github.com/cran/qgraph -* URL: http://sachaepskamp.com/qgraph -* BugReports: https://github.com/SachaEpskamp/qgraph -* Date/Publication: 2020-02-21 19:20:02 UTC -* Number of recursive dependencies: 111 - -Run `revdep_details(,"qgraph")` for more info - -
- -## In both - -* checking whether package ‘qgraph’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qgraph/new/qgraph.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘sendplot’ - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘qgraph’ ... -** package ‘qgraph’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qgraph/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qgraph/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c layout_rcpp.cpp -o layout_rcpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qgraph.so RcppExports.o layout_rcpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [qgraph.so] Error 1 -ERROR: compilation failed for package ‘qgraph’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qgraph/new/qgraph.Rcheck/qgraph’ - -``` -### CRAN - -``` -* installing *source* package ‘qgraph’ ... -** package ‘qgraph’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c layout_rcpp.cpp -o layout_rcpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qgraph.so RcppExports.o layout_rcpp.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [qgraph.so] Error 1 -ERROR: compilation failed for package ‘qgraph’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qgraph/old/qgraph.Rcheck/qgraph’ - -``` -# quanteda - -
- -* Version: 2.0.1 -* Source code: https://github.com/cran/quanteda -* URL: https://quanteda.io -* BugReports: https://github.com/quanteda/quanteda/issues -* Date/Publication: 2020-03-18 15:40:07 UTC -* Number of recursive dependencies: 153 - -Run `revdep_details(,"quanteda")` for more info - -
- -## In both - -* checking whether package ‘quanteda’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quanteda/new/quanteda.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘quanteda’ ... -** package ‘quanteda’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c collocations_mt_.cpp -o collocations_mt_.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c dist_mt.cpp -o dist_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c fcm_mt.cpp -o fcm_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c kwic_mt.cpp -o kwic_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_chunk_mt.cpp -o tokens_chunk_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_compound_mt.cpp -o tokens_compound_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_lookup_mt.cpp -o tokens_lookup_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_ngrams_mt.cpp -o tokens_ngrams_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_recompile_mt.cpp -o tokens_recompile_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_replace_mt.cpp -o tokens_replace_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_segment_mt.cpp -o tokens_segment_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_select_mt.cpp -o tokens_select_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c utility.cpp -o utility.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c wordcloud.cpp -o wordcloud.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o quanteda.so RcppExports.o collocations_mt_.o dist_mt.o fcm_mt.o kwic_mt.o tokens_chunk_mt.o tokens_compound_mt.o tokens_lookup_mt.o tokens_ngrams_mt.o tokens_recompile_mt.o tokens_replace_mt.o tokens_segment_mt.o tokens_select_mt.o utility.o wordcloud.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [quanteda.so] Error 1 -ERROR: compilation failed for package ‘quanteda’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quanteda/new/quanteda.Rcheck/quanteda’ - -``` -### CRAN - -``` -* installing *source* package ‘quanteda’ ... -** package ‘quanteda’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c collocations_mt_.cpp -o collocations_mt_.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c dist_mt.cpp -o dist_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c fcm_mt.cpp -o fcm_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c kwic_mt.cpp -o kwic_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_chunk_mt.cpp -o tokens_chunk_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_compound_mt.cpp -o tokens_compound_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_lookup_mt.cpp -o tokens_lookup_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_ngrams_mt.cpp -o tokens_ngrams_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_recompile_mt.cpp -o tokens_recompile_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_replace_mt.cpp -o tokens_replace_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_segment_mt.cpp -o tokens_segment_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c tokens_select_mt.cpp -o tokens_select_mt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c utility.cpp -o utility.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DARMA_DONT_PRINT_OPENMP_WARNING -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppParallel/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/quanteda/RcppArmadillo/include' -I/usr/local/include -DARMA_64BIT_WORD=1 -fPIC -Wall -O3 -c wordcloud.cpp -o wordcloud.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o quanteda.so RcppExports.o collocations_mt_.o dist_mt.o fcm_mt.o kwic_mt.o tokens_chunk_mt.o tokens_compound_mt.o tokens_lookup_mt.o tokens_ngrams_mt.o tokens_recompile_mt.o tokens_replace_mt.o tokens_segment_mt.o tokens_select_mt.o utility.o wordcloud.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [quanteda.so] Error 1 -ERROR: compilation failed for package ‘quanteda’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quanteda/old/quanteda.Rcheck/quanteda’ - -``` -# quokar - -
- -* Version: 0.1.0 -* Source code: https://github.com/cran/quokar -* URL: https://github.com/wenjingwang/quokar -* BugReports: https://github.com/wenjingwang/quokar/issues -* Date/Publication: 2017-11-10 10:21:36 UTC -* Number of recursive dependencies: 82 - -Run `revdep_details(,"quokar")` for more info - -
- -## In both - -* checking whether package ‘quokar’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quokar/new/quokar.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘quokar’ ... -** package ‘quokar’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rqbr.f -o rqbr.o -rqbr.f:567:5: - - 567 | 23243 continue - | 1 -Warning: Label 23243 at (1) defined but not used [-Wunused-label] -rqbr.f:527:5: - - 527 | 23231 continue - | 1 -Warning: Label 23231 at (1) defined but not used [-Wunused-label] -rqbr.f:514:5: - - 514 | 23227 continue - | 1 -Warning: Label 23227 at (1) defined but not used [-Wunused-label] -rqbr.f:517:5: - - 517 | 23223 continue - | 1 -Warning: Label 23223 at (1) defined but not used [-Wunused-label] -rqbr.f:506:5: - - 506 | 23221 continue - | 1 -Warning: Label 23221 at (1) defined but not used [-Wunused-label] -rqbr.f:481:5: - - 481 | 23205 continue - | 1 -Warning: Label 23205 at (1) defined but not used [-Wunused-label] -rqbr.f:462:5: - - 462 | 23203 continue - | 1 -Warning: Label 23203 at (1) defined but not used [-Wunused-label] -rqbr.f:458:5: - - 458 | 23201 continue - | 1 -Warning: Label 23201 at (1) defined but not used [-Wunused-label] -rqbr.f:432:5: - - 432 | 23193 continue - | 1 -Warning: Label 23193 at (1) defined but not used [-Wunused-label] -rqbr.f:425:5: - - 425 | 23191 continue - | 1 -Warning: Label 23191 at (1) defined but not used [-Wunused-label] -rqbr.f:375:5: - - 375 | 23171 continue - | 1 -Warning: Label 23171 at (1) defined but not used [-Wunused-label] -rqbr.f:393:5: - - 393 | 23169 continue - | 1 -Warning: Label 23169 at (1) defined but not used [-Wunused-label] -rqbr.f:361:5: - - 361 | 23167 continue - | 1 -Warning: Label 23167 at (1) defined but not used [-Wunused-label] -rqbr.f:348:5: - - 348 | 23161 continue - | 1 -Warning: Label 23161 at (1) defined but not used [-Wunused-label] -rqbr.f:341:5: - - 341 | 23157 continue - | 1 -Warning: Label 23157 at (1) defined but not used [-Wunused-label] -rqbr.f:336:5: - - 336 | 23155 continue - | 1 -Warning: Label 23155 at (1) defined but not used [-Wunused-label] -rqbr.f:327:5: - - 327 | 23147 continue - | 1 -Warning: Label 23147 at (1) defined but not used [-Wunused-label] -rqbr.f:317:5: - - 317 | 23141 continue - | 1 -Warning: Label 23141 at (1) defined but not used [-Wunused-label] -rqbr.f:303:5: - - 303 | 23139 continue - | 1 -Warning: Label 23139 at (1) defined but not used [-Wunused-label] -rqbr.f:294:5: - - 294 | 23133 continue - | 1 -Warning: Label 23133 at (1) defined but not used [-Wunused-label] -rqbr.f:277:5: - - 277 | 23129 continue - | 1 -Warning: Label 23129 at (1) defined but not used [-Wunused-label] -rqbr.f:272:5: - - 272 | 23121 continue - | 1 -Warning: Label 23121 at (1) defined but not used [-Wunused-label] -rqbr.f:258:5: - - 258 | 23117 continue - | 1 -Warning: Label 23117 at (1) defined but not used [-Wunused-label] -rqbr.f:243:5: - - 243 | 23111 continue - | 1 -Warning: Label 23111 at (1) defined but not used [-Wunused-label] -rqbr.f:234:5: - - 234 | 23107 continue - | 1 -Warning: Label 23107 at (1) defined but not used [-Wunused-label] -rqbr.f:237:5: - - 237 | 23103 continue - | 1 -Warning: Label 23103 at (1) defined but not used [-Wunused-label] -rqbr.f:225:5: - - 225 | 23099 continue - | 1 -Warning: Label 23099 at (1) defined but not used [-Wunused-label] -rqbr.f:217:5: - - 217 | 23097 continue - | 1 -Warning: Label 23097 at (1) defined but not used [-Wunused-label] -rqbr.f:208:5: - - 208 | 23095 continue - | 1 -Warning: Label 23095 at (1) defined but not used [-Wunused-label] -rqbr.f:187:5: - - 187 | 23085 continue - | 1 -Warning: Label 23085 at (1) defined but not used [-Wunused-label] -rqbr.f:210:5: - - 210 | 23080 goto 23079 - | 1 -Warning: Label 23080 at (1) defined but not used [-Wunused-label] -rqbr.f:174:5: - - 174 | 23076 continue - | 1 -Warning: Label 23076 at (1) defined but not used [-Wunused-label] -rqbr.f:279:5: - - 279 | 23073 goto 23072 - | 1 -Warning: Label 23073 at (1) defined but not used [-Wunused-label] -rqbr.f:159:5: - - 159 | 23071 continue - | 1 -Warning: Label 23071 at (1) defined but not used [-Wunused-label] -rqbr.f:151:5: - - 151 | 23059 continue - | 1 -Warning: Label 23059 at (1) defined but not used [-Wunused-label] -rqbr.f:281:5: - - 281 | 23056 goto 23055 - | 1 -Warning: Label 23056 at (1) defined but not used [-Wunused-label] -rqbr.f:283:5: - - 283 | 23053 goto 23052 - | 1 -Warning: Label 23053 at (1) defined but not used [-Wunused-label] -rqbr.f:127:5: - - 127 | 23049 continue - | 1 -Warning: Label 23049 at (1) defined but not used [-Wunused-label] -rqbr.f:491:5: - - 491 | 23046 goto 23045 - | 1 -Warning: Label 23046 at (1) defined but not used [-Wunused-label] -rqbr.f:116:5: - - 116 | 23044 continue - | 1 -Warning: Label 23044 at (1) defined but not used [-Wunused-label] -rqbr.f:119:5: - - 119 | 23042 continue - | 1 -Warning: Label 23042 at (1) defined but not used [-Wunused-label] -rqbr.f:104:5: - - 104 | 23038 continue - | 1 -Warning: Label 23038 at (1) defined but not used [-Wunused-label] -rqbr.f:107:5: - - 107 | 23036 continue - | 1 -Warning: Label 23036 at (1) defined but not used [-Wunused-label] -rqbr.f:91:5: - - 91 | 23034 continue - | 1 -Warning: Label 23034 at (1) defined but not used [-Wunused-label] -rqbr.f:78:5: - - 78 | 23022 continue - | 1 -Warning: Label 23022 at (1) defined but not used [-Wunused-label] -rqbr.f:94:5: - - 94 | 23020 continue - | 1 -Warning: Label 23020 at (1) defined but not used [-Wunused-label] -rqbr.f:562:5: - - 562 | 23017 goto 23016 - | 1 -Warning: Label 23017 at (1) defined but not used [-Wunused-label] -rqbr.f:54:5: - - 54 | 23013 continue - | 1 -Warning: Label 23013 at (1) defined but not used [-Wunused-label] -rqbr.f:50:5: - - 50 | 23011 continue - | 1 -Warning: Label 23011 at (1) defined but not used [-Wunused-label] -rqbr.f:300:10: - - 300 | k = wa(i,n4)*sign(one,wa(i,n4)) - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:306:11: - - 306 | kd = abs(wa(m4,i))-n - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:319:11: - - 319 | kd = abs(wa(i,n4))-n - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:357:10: - - 357 | k = wa(i,n4)*sign(one,wa(i,n4)) - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:365:10: - - 365 | k = wa(i,n4)*sign(one,wa(i,n4))-n - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:521:10: - - 521 | k = wa(i,n4)*sign(one,wa(i,n4)) - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:5:0: - - 5 | integer n,n1,n2,n3,nsol,ndsol,out,s(m),h(nn,nsol) - | -Warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized] -rqbr.f:273:0: - - 273 | if(wa(m1,in).lt.zero)then - | -Warning: 'in' may be used uninitialized in this function [-Wmaybe-uninitialized] -rqbr.f:483:0: - - 483 | if(tnt.ge.t1+toler)then - | -Warning: 't1' may be used uninitialized in this function [-Wmaybe-uninitialized] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rqfnb.f -o rqfnb.o -rqfnb.f:134:5: - - 134 | 23029 continue - | 1 -Warning: Label 23029 at (1) defined but not used [-Wunused-label] -rqfnb.f:107:5: - - 107 | 23027 continue - | 1 -Warning: Label 23027 at (1) defined but not used [-Wunused-label] -rqfnb.f:94:5: - - 94 | 23015 continue - | 1 -Warning: Label 23015 at (1) defined but not used [-Wunused-label] -rqfnb.f:64:5: - - 64 | 23011 continue - | 1 -Warning: Label 23011 at (1) defined but not used [-Wunused-label] -rqfnb.f:149:5: - - 149 | 23009 continue - | 1 -Warning: Label 23009 at (1) defined but not used [-Wunused-label] -rqfnb.f:53:5: - - 53 | 23005 continue - | 1 -Warning: Label 23005 at (1) defined but not used [-Wunused-label] -rqfnb.f:36:5: - - 36 | 23001 continue - | 1 -Warning: Label 23001 at (1) defined but not used [-Wunused-label] -rqfnb.f:169:5: - - 169 | 23043 continue - | 1 -Warning: Label 23043 at (1) defined but not used [-Wunused-label] -rqfnb.f:163:5: - - 163 | 23041 continue - | 1 -Warning: Label 23041 at (1) defined but not used [-Wunused-label] -rqfnb.f:165:5: - - 165 | 23039 continue - | 1 -Warning: Label 23039 at (1) defined but not used [-Wunused-label] -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o quokar.so init.o rqbr.o rqfnb.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [quokar.so] Error 1 -ERROR: compilation failed for package ‘quokar’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quokar/new/quokar.Rcheck/quokar’ - -``` -### CRAN - -``` -* installing *source* package ‘quokar’ ... -** package ‘quokar’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -O3 -c init.c -o init.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rqbr.f -o rqbr.o -rqbr.f:567:5: - - 567 | 23243 continue - | 1 -Warning: Label 23243 at (1) defined but not used [-Wunused-label] -rqbr.f:527:5: - - 527 | 23231 continue - | 1 -Warning: Label 23231 at (1) defined but not used [-Wunused-label] -rqbr.f:514:5: - - 514 | 23227 continue - | 1 -Warning: Label 23227 at (1) defined but not used [-Wunused-label] -rqbr.f:517:5: - - 517 | 23223 continue - | 1 -Warning: Label 23223 at (1) defined but not used [-Wunused-label] -rqbr.f:506:5: - - 506 | 23221 continue - | 1 -Warning: Label 23221 at (1) defined but not used [-Wunused-label] -rqbr.f:481:5: - - 481 | 23205 continue - | 1 -Warning: Label 23205 at (1) defined but not used [-Wunused-label] -rqbr.f:462:5: - - 462 | 23203 continue - | 1 -Warning: Label 23203 at (1) defined but not used [-Wunused-label] -rqbr.f:458:5: - - 458 | 23201 continue - | 1 -Warning: Label 23201 at (1) defined but not used [-Wunused-label] -rqbr.f:432:5: - - 432 | 23193 continue - | 1 -Warning: Label 23193 at (1) defined but not used [-Wunused-label] -rqbr.f:425:5: - - 425 | 23191 continue - | 1 -Warning: Label 23191 at (1) defined but not used [-Wunused-label] -rqbr.f:375:5: - - 375 | 23171 continue - | 1 -Warning: Label 23171 at (1) defined but not used [-Wunused-label] -rqbr.f:393:5: - - 393 | 23169 continue - | 1 -Warning: Label 23169 at (1) defined but not used [-Wunused-label] -rqbr.f:361:5: - - 361 | 23167 continue - | 1 -Warning: Label 23167 at (1) defined but not used [-Wunused-label] -rqbr.f:348:5: - - 348 | 23161 continue - | 1 -Warning: Label 23161 at (1) defined but not used [-Wunused-label] -rqbr.f:341:5: - - 341 | 23157 continue - | 1 -Warning: Label 23157 at (1) defined but not used [-Wunused-label] -rqbr.f:336:5: - - 336 | 23155 continue - | 1 -Warning: Label 23155 at (1) defined but not used [-Wunused-label] -rqbr.f:327:5: - - 327 | 23147 continue - | 1 -Warning: Label 23147 at (1) defined but not used [-Wunused-label] -rqbr.f:317:5: - - 317 | 23141 continue - | 1 -Warning: Label 23141 at (1) defined but not used [-Wunused-label] -rqbr.f:303:5: - - 303 | 23139 continue - | 1 -Warning: Label 23139 at (1) defined but not used [-Wunused-label] -rqbr.f:294:5: - - 294 | 23133 continue - | 1 -Warning: Label 23133 at (1) defined but not used [-Wunused-label] -rqbr.f:277:5: - - 277 | 23129 continue - | 1 -Warning: Label 23129 at (1) defined but not used [-Wunused-label] -rqbr.f:272:5: - - 272 | 23121 continue - | 1 -Warning: Label 23121 at (1) defined but not used [-Wunused-label] -rqbr.f:258:5: - - 258 | 23117 continue - | 1 -Warning: Label 23117 at (1) defined but not used [-Wunused-label] -rqbr.f:243:5: - - 243 | 23111 continue - | 1 -Warning: Label 23111 at (1) defined but not used [-Wunused-label] -rqbr.f:234:5: - - 234 | 23107 continue - | 1 -Warning: Label 23107 at (1) defined but not used [-Wunused-label] -rqbr.f:237:5: - - 237 | 23103 continue - | 1 -Warning: Label 23103 at (1) defined but not used [-Wunused-label] -rqbr.f:225:5: - - 225 | 23099 continue - | 1 -Warning: Label 23099 at (1) defined but not used [-Wunused-label] -rqbr.f:217:5: - - 217 | 23097 continue - | 1 -Warning: Label 23097 at (1) defined but not used [-Wunused-label] -rqbr.f:208:5: - - 208 | 23095 continue - | 1 -Warning: Label 23095 at (1) defined but not used [-Wunused-label] -rqbr.f:187:5: - - 187 | 23085 continue - | 1 -Warning: Label 23085 at (1) defined but not used [-Wunused-label] -rqbr.f:210:5: - - 210 | 23080 goto 23079 - | 1 -Warning: Label 23080 at (1) defined but not used [-Wunused-label] -rqbr.f:174:5: - - 174 | 23076 continue - | 1 -Warning: Label 23076 at (1) defined but not used [-Wunused-label] -rqbr.f:279:5: - - 279 | 23073 goto 23072 - | 1 -Warning: Label 23073 at (1) defined but not used [-Wunused-label] -rqbr.f:159:5: - - 159 | 23071 continue - | 1 -Warning: Label 23071 at (1) defined but not used [-Wunused-label] -rqbr.f:151:5: - - 151 | 23059 continue - | 1 -Warning: Label 23059 at (1) defined but not used [-Wunused-label] -rqbr.f:281:5: - - 281 | 23056 goto 23055 - | 1 -Warning: Label 23056 at (1) defined but not used [-Wunused-label] -rqbr.f:283:5: - - 283 | 23053 goto 23052 - | 1 -Warning: Label 23053 at (1) defined but not used [-Wunused-label] -rqbr.f:127:5: - - 127 | 23049 continue - | 1 -Warning: Label 23049 at (1) defined but not used [-Wunused-label] -rqbr.f:491:5: - - 491 | 23046 goto 23045 - | 1 -Warning: Label 23046 at (1) defined but not used [-Wunused-label] -rqbr.f:116:5: - - 116 | 23044 continue - | 1 -Warning: Label 23044 at (1) defined but not used [-Wunused-label] -rqbr.f:119:5: - - 119 | 23042 continue - | 1 -Warning: Label 23042 at (1) defined but not used [-Wunused-label] -rqbr.f:104:5: - - 104 | 23038 continue - | 1 -Warning: Label 23038 at (1) defined but not used [-Wunused-label] -rqbr.f:107:5: - - 107 | 23036 continue - | 1 -Warning: Label 23036 at (1) defined but not used [-Wunused-label] -rqbr.f:91:5: - - 91 | 23034 continue - | 1 -Warning: Label 23034 at (1) defined but not used [-Wunused-label] -rqbr.f:78:5: - - 78 | 23022 continue - | 1 -Warning: Label 23022 at (1) defined but not used [-Wunused-label] -rqbr.f:94:5: - - 94 | 23020 continue - | 1 -Warning: Label 23020 at (1) defined but not used [-Wunused-label] -rqbr.f:562:5: - - 562 | 23017 goto 23016 - | 1 -Warning: Label 23017 at (1) defined but not used [-Wunused-label] -rqbr.f:54:5: - - 54 | 23013 continue - | 1 -Warning: Label 23013 at (1) defined but not used [-Wunused-label] -rqbr.f:50:5: - - 50 | 23011 continue - | 1 -Warning: Label 23011 at (1) defined but not used [-Wunused-label] -rqbr.f:300:10: - - 300 | k = wa(i,n4)*sign(one,wa(i,n4)) - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:306:11: - - 306 | kd = abs(wa(m4,i))-n - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:319:11: - - 319 | kd = abs(wa(i,n4))-n - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:357:10: - - 357 | k = wa(i,n4)*sign(one,wa(i,n4)) - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:365:10: - - 365 | k = wa(i,n4)*sign(one,wa(i,n4))-n - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:521:10: - - 521 | k = wa(i,n4)*sign(one,wa(i,n4)) - | 1 -Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] -rqbr.f:5:0: - - 5 | integer n,n1,n2,n3,nsol,ndsol,out,s(m),h(nn,nsol) - | -Warning: 'out' may be used uninitialized in this function [-Wmaybe-uninitialized] -rqbr.f:273:0: - - 273 | if(wa(m1,in).lt.zero)then - | -Warning: 'in' may be used uninitialized in this function [-Wmaybe-uninitialized] -rqbr.f:483:0: - - 483 | if(tnt.ge.t1+toler)then - | -Warning: 't1' may be used uninitialized in this function [-Wmaybe-uninitialized] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c rqfnb.f -o rqfnb.o -rqfnb.f:134:5: - - 134 | 23029 continue - | 1 -Warning: Label 23029 at (1) defined but not used [-Wunused-label] -rqfnb.f:107:5: - - 107 | 23027 continue - | 1 -Warning: Label 23027 at (1) defined but not used [-Wunused-label] -rqfnb.f:94:5: - - 94 | 23015 continue - | 1 -Warning: Label 23015 at (1) defined but not used [-Wunused-label] -rqfnb.f:64:5: - - 64 | 23011 continue - | 1 -Warning: Label 23011 at (1) defined but not used [-Wunused-label] -rqfnb.f:149:5: - - 149 | 23009 continue - | 1 -Warning: Label 23009 at (1) defined but not used [-Wunused-label] -rqfnb.f:53:5: - - 53 | 23005 continue - | 1 -Warning: Label 23005 at (1) defined but not used [-Wunused-label] -rqfnb.f:36:5: - - 36 | 23001 continue - | 1 -Warning: Label 23001 at (1) defined but not used [-Wunused-label] -rqfnb.f:169:5: - - 169 | 23043 continue - | 1 -Warning: Label 23043 at (1) defined but not used [-Wunused-label] -rqfnb.f:163:5: - - 163 | 23041 continue - | 1 -Warning: Label 23041 at (1) defined but not used [-Wunused-label] -rqfnb.f:165:5: - - 165 | 23039 continue - | 1 -Warning: Label 23039 at (1) defined but not used [-Wunused-label] -clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o quokar.so init.o rqbr.o rqfnb.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [quokar.so] Error 1 -ERROR: compilation failed for package ‘quokar’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/quokar/old/quokar.Rcheck/quokar’ - -``` -# qwraps2 - -
- -* Version: 0.4.2 -* Source code: https://github.com/cran/qwraps2 -* URL: https://github.com/dewittpe/qwraps2/ -* Date/Publication: 2019-12-02 20:40:13 UTC -* Number of recursive dependencies: 76 - -Run `revdep_details(,"qwraps2")` for more info - -
- -## In both - -* checking whether package ‘qwraps2’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qwraps2/new/qwraps2.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘qwraps2’ ... -** package ‘qwraps2’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c logit.cpp -o logit.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c traprule.cpp -o traprule.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qwraps2.so RcppExports.o logit.o traprule.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [qwraps2.so] Error 1 -ERROR: compilation failed for package ‘qwraps2’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qwraps2/new/qwraps2.Rcheck/qwraps2’ - -``` -### CRAN - -``` -* installing *source* package ‘qwraps2’ ... -** package ‘qwraps2’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c logit.cpp -o logit.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/qwraps2/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c traprule.cpp -o traprule.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qwraps2.so RcppExports.o logit.o traprule.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [qwraps2.so] Error 1 -ERROR: compilation failed for package ‘qwraps2’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/qwraps2/old/qwraps2.Rcheck/qwraps2’ - -``` -# Rariant - -
- -* Version: 1.24.0 -* Source code: https://github.com/cran/Rariant -* URL: https://github.com/juliangehring/Rariant -* BugReports: https://support.bioconductor.org -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 167 - -Run `revdep_details(,"Rariant")` for more info - -
- -## Newly broken - -* checking whether package ‘Rariant’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Rariant/new/Rariant.Rcheck/00install.out’ for details. - ``` - -## Newly fixed - -* checking examples ... WARNING - ``` - Found the following significant warnings: - - Warning: 'rbind_all' is deprecated. - Deprecated functions may be defunct as soon as of the next release of - R. - See ?Deprecated. - ``` - -* checking installed package size ... NOTE - ``` - installed size is 7.7Mb - sub-directories of 1Mb or more: - doc 2.2Mb - extdata 5.2Mb - ``` - -* checking R code for possible problems ... NOTE - ``` - tallyBamRegion: no visible global function definition for 'PileupParam' - tallyBamRegion: no visible global function definition for - 'ScanBamParam' - tallyBamRegion: no visible global function definition for 'pileup' - Undefined global functions or variables: - PileupParam ScanBamParam pileup - ``` - -* checking installed files from ‘inst/doc’ ... NOTE - ``` - The following files should probably not be installed: - ‘rariant-inspect-ci.png’, ‘rariant-inspect-shift.png’ - - Consider the use of a .Rinstignore file: see ‘Writing R Extensions’, - or move the vignette sources from ‘inst/doc’ to ‘vignettes’. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Rariant’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: object 'rbind_all' is not exported by 'namespace:dplyr' -Execution halted -ERROR: lazy loading failed for package ‘Rariant’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Rariant/new/Rariant.Rcheck/Rariant’ - -``` -### CRAN - -``` -* installing *source* package ‘Rariant’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (Rariant) - -``` -# rbridge - -
- -* Version: 1.0.2 -* Source code: https://github.com/cran/rbridge -* Date/Publication: 2020-02-29 11:40:03 UTC -* Number of recursive dependencies: 39 - -Run `revdep_details(,"rbridge")` for more info - -
- -## In both - -* checking whether package ‘rbridge’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rbridge/new/rbridge.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rbridge’ ... -** package ‘rbridge’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Main_functions.cpp -o Main_functions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rbridge.so Main_functions.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [rbridge.so] Error 1 -ERROR: compilation failed for package ‘rbridge’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rbridge/new/rbridge.Rcheck/rbridge’ - -``` -### CRAN - -``` -* installing *source* package ‘rbridge’ ... -** package ‘rbridge’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Main_functions.cpp -o Main_functions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/rbridge/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rbridge.so Main_functions.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [rbridge.so] Error 1 -ERROR: compilation failed for package ‘rbridge’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rbridge/old/rbridge.Rcheck/rbridge’ - -``` -# registr - -
- -* Version: 1.0.0 -* Source code: https://github.com/cran/registr -* Date/Publication: 2020-03-16 11:40:02 UTC -* Number of recursive dependencies: 67 - -Run `revdep_details(,"registr")` for more info - -
- -## In both - -* checking whether package ‘registr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/registr/new/registr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘registr’ ... -** package ‘registr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expectedScores.cpp -o expectedScores.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expectedXi.cpp -o expectedXi.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c squareTheta.cpp -o squareTheta.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o registr.so RcppExports.o expectedScores.o expectedXi.o squareTheta.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib -lpcre2-8 -llzma -lbz2 -lz -licucore -ldl -lm -liconv -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lpcre2-8 -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [registr.so] Error 1 -ERROR: compilation failed for package ‘registr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/registr/new/registr.Rcheck/registr’ - -``` -### CRAN - -``` -* installing *source* package ‘registr’ ... -** package ‘registr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expectedScores.cpp -o expectedScores.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c expectedXi.cpp -o expectedXi.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/registr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c squareTheta.cpp -o squareTheta.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o registr.so RcppExports.o expectedScores.o expectedXi.o squareTheta.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib -lpcre2-8 -llzma -lbz2 -lz -licucore -ldl -lm -liconv -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lpcre2-8 -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [registr.so] Error 1 -ERROR: compilation failed for package ‘registr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/registr/old/registr.Rcheck/registr’ - -``` -# resautonet - -
- -* Version: 1.0 -* Source code: https://github.com/cran/resautonet -* Date/Publication: 2019-03-16 23:00:08 UTC -* Number of recursive dependencies: 41 - -Run `revdep_details(,"resautonet")` for more info - -
- -## In both - -* checking whether package ‘resautonet’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/resautonet/new/resautonet.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘resautonet’ ... -** package ‘resautonet’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rcpparma_hello_world.cpp -o rcpparma_hello_world.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o resautonet.so RcppExports.o rcpparma_hello_world.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [resautonet.so] Error 1 -ERROR: compilation failed for package ‘resautonet’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/resautonet/new/resautonet.Rcheck/resautonet’ - -``` -### CRAN - -``` -* installing *source* package ‘resautonet’ ... -** package ‘resautonet’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/resautonet/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rcpparma_hello_world.cpp -o rcpparma_hello_world.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o resautonet.so RcppExports.o rcpparma_hello_world.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [resautonet.so] Error 1 -ERROR: compilation failed for package ‘resautonet’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/resautonet/old/resautonet.Rcheck/resautonet’ - -``` -# rnaseqGene - -
- -* Version: 1.12.0 -* Source code: https://github.com/cran/rnaseqGene -* URL: https://github.com/mikelove/rnaseqGene/ -* Date/Publication: 2020-04-28 -* Number of recursive dependencies: 207 - -Run `revdep_details(,"rnaseqGene")` for more info - -
- -## In both - -* checking whether package ‘rnaseqGene’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rnaseqGene/new/rnaseqGene.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Depends: includes the non-default packages: - 'BiocStyle', 'airway', 'tximeta', 'magrittr', 'DESeq2', 'apeglm', - 'vsn', 'dplyr', 'ggplot2', 'hexbin', 'pheatmap', 'RColorBrewer', - 'PoiClaClu', 'glmpca', 'ggbeeswarm', 'genefilter', 'AnnotationDbi', - 'org.Hs.eg.db', 'ReportingTools', 'Gviz', 'sva', 'RUVSeq', 'fission' - Adding so many packages to the search path is excessive and importing - selectively is preferable. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘rnaseqGene’ ... -** using staged installation -** inst -** help -No man pages found in package ‘rnaseqGene’ -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -Error: package or namespace load failed for 'EDASeq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called 'DESeq' -Error : package 'EDASeq' could not be loaded -Error: loading failed -Execution halted -ERROR: loading failed -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rnaseqGene/new/rnaseqGene.Rcheck/rnaseqGene’ - -``` -### CRAN - -``` -* installing *source* package ‘rnaseqGene’ ... -** using staged installation -** inst -** help -No man pages found in package ‘rnaseqGene’ -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -Error: package or namespace load failed for 'EDASeq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): - there is no package called 'DESeq' -Error : package 'EDASeq' could not be loaded -Error: loading failed -Execution halted -ERROR: loading failed -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/rnaseqGene/old/rnaseqGene.Rcheck/rnaseqGene’ - -``` -# RSSL - -
- -* Version: 0.9.1 -* Source code: https://github.com/cran/RSSL -* URL: http://www.github.com/jkrijthe/RSSL -* BugReports: http://www.github.com/jkrijthe/RSSL -* Date/Publication: 2020-02-04 10:20:07 UTC -* Number of recursive dependencies: 74 - -Run `revdep_details(,"RSSL")` for more info - -
- -## In both - -* checking whether package ‘RSSL’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RSSL/new/RSSL.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘RSSL’ ... -** package ‘RSSL’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c GRFClassifier.cpp -o GRFClassifier.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c Rsvm.c -o Rsvm.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ssl.cpp -o ssl.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c svm.cpp -o svm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c svmlin_rcpp.cpp -o svmlin_rcpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RSSL.so GRFClassifier.o RcppExports.o Rsvm.o init.o ssl.o svm.o svmlin_rcpp.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [RSSL.so] Error 1 -ERROR: compilation failed for package ‘RSSL’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RSSL/new/RSSL.Rcheck/RSSL’ - -``` -### CRAN - -``` -* installing *source* package ‘RSSL’ ... -** package ‘RSSL’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c GRFClassifier.cpp -o GRFClassifier.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c Rsvm.c -o Rsvm.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -O3 -c init.c -o init.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ssl.cpp -o ssl.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c svm.cpp -o svm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c svmlin_rcpp.cpp -o svmlin_rcpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RSSL/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RSSL.so GRFClassifier.o RcppExports.o Rsvm.o init.o ssl.o svm.o svmlin_rcpp.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [RSSL.so] Error 1 -ERROR: compilation failed for package ‘RSSL’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RSSL/old/RSSL.Rcheck/RSSL’ - -``` -# RxODE - -
- -* Version: 0.9.2-0 -* Source code: https://github.com/cran/RxODE -* URL: https://nlmixrdevelopment.github.io/RxODE/ -* BugReports: https://github.com/nlmixrdevelopment/RxODE/issues -* Date/Publication: 2020-03-13 07:10:14 UTC -* Number of recursive dependencies: 132 - -Run `revdep_details(,"RxODE")` for more info - -
- -## In both - -* checking whether package ‘RxODE’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RxODE/new/RxODE.Rcheck/00install.out’ for details. - ``` - -* checking package dependencies ... NOTE - ``` - Packages suggested but not available for checking: - 'SnakeCharmR', 'installr' - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘RxODE’ ... -** package ‘RxODE’ successfully unpacked and MD5 sums checked -** using staged installation -checking for gcc... clang -mmacosx-version-min=10.13 -checking whether the C compiler works... yes -checking for C compiler default output file name... a.out -checking for suffix of executables... -checking whether we are cross compiling... no -checking for suffix of object files... o -checking whether we are using the GNU C compiler... yes -checking whether clang -mmacosx-version-min=10.13 accepts -g... yes -checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed -checking for clang -mmacosx-version-min=10.13 option to support OpenMP... unsupported -configure: creating ./config.status -config.status: creating src/Makevars ---------[begin src/Makevars]-------- -# -*- mode: makefile-gmake -*- -CXX_STD = CXX11 - -################################################################################ -## Package library flags. -PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) - -# Release options -PKG_CFLAGS = -D_isRxODE_ -PKG_CXXFLAGS = -D_isRxODE_ - - -SOURCES_C = call_dvode.c dop853.c tran.c omegaChol.c init.c par_solve.c cfode.c common.c corfailure.c correction.c daxpy.c ddot.c dgefa.c dgesl.c dscal.c fnorm.c idamax.c intdy.c lsoda.c methodswitch.c orderswitch.c prja.c scaleh.c solsy.c stoda.c vmnorm.c strdup_printf.c rprintf.c lincmt.c box.c -SOURCES_CPP = RcppExports.cpp WinDrive.cpp rxInv.cpp rxData.cpp etTran.cpp et.cpp rxStack.cpp cvPost.cpp -SOURCES_FORTAN = dlsoda.f opkda2.f - -OBJECTS = $(SOURCES_C:.c=.o) $(SOURCES_FORTAN:.f=.o) $(SOURCES_CPP:.cpp=.o) - -# strippedLib: $(SHLIB) -# if test -e "/usr/bin/strip"; then /usr/bin/strip -s $(SHLIB); fi - -.PHONY: all -# all: strippedLib -# $(SHLIB): mylibs -all: $(SHLIB) -# mylibs: -# $(CC) -I"$(R_INCLUDE_DIR)" $(CFLAGS) $(CPPFLAGS) $(SHLIB_CFLAGS) $(CPICFLAGS) -I../inst/include/ ../inst/include/RxODE_model.h || $(CC) --version - - ---------[end src/Makevars]-------- -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c call_dvode.c -o call_dvode.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dop853.c -o dop853.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c tran.c -o tran.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c omegaChol.c -o omegaChol.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c init.c -o init.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c par_solve.c -o par_solve.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c cfode.c -o cfode.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c common.c -o common.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c corfailure.c -o corfailure.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c correction.c -o correction.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c daxpy.c -o daxpy.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c ddot.c -o ddot.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dgefa.c -o dgefa.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dgesl.c -o dgesl.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dscal.c -o dscal.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c fnorm.c -o fnorm.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c idamax.c -o idamax.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c intdy.c -o intdy.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c lsoda.c -o lsoda.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c methodswitch.c -o methodswitch.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c orderswitch.c -o orderswitch.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c prja.c -o prja.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c scaleh.c -o scaleh.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c solsy.c -o solsy.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c stoda.c -o stoda.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c vmnorm.c -o vmnorm.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c strdup_printf.c -o strdup_printf.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c rprintf.c -o rprintf.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c lincmt.c -o lincmt.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c box.c -o box.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c dlsoda.f -o dlsoda.o -dlsoda.f:705:0: - - 705 | IF (IREDO .EQ. 0) GO TO 690 - | -Warning: 'iredo' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:679:0: - - 679 | 170 RH = MAX(RH,HMIN/ABS(H)) - | -Warning: 'rh' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2874:0: - - 2874 | IF (IHIT) T = TCRIT - | -Warning: 'tcrit' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2874:0: Warning: 'ihit' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2615:0: - - 2615 | IF (H0 .NE. 0.0D0 .AND. (T + H0 - TCRIT)*H0 .GT. 0.0D0) - | -Warning: 'h0' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2537:0: - - 2537 | LEN1S = LEN1S + LENWM - | -Warning: 'lenwm' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2536:0: - - 2536 | IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2 - | -Warning: 'mu' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2536:0: Warning: 'ml' may be used uninitialized in this function [-Wmaybe-uninitialized] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c opkda2.f -o opkda2.o -opkda2.f:650:0: - - 650 | INTEGER FUNCTION IXSAV (IPAR, IVALUE, ISET) - | -Warning: '__result_ixsav' may be used uninitialized in this function [-Wmaybe-uninitialized] -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c WinDrive.cpp -o WinDrive.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxInv.cpp -o rxInv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxData.cpp -o rxData.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c etTran.cpp -o etTran.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c et.cpp -o et.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxStack.cpp -o rxStack.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c cvPost.cpp -o cvPost.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RxODE.so call_dvode.o dop853.o tran.o omegaChol.o init.o par_solve.o cfode.o common.o corfailure.o correction.o daxpy.o ddot.o dgefa.o dgesl.o dscal.o fnorm.o idamax.o intdy.o lsoda.o methodswitch.o orderswitch.o prja.o scaleh.o solsy.o stoda.o vmnorm.o strdup_printf.o rprintf.o lincmt.o box.o dlsoda.o opkda2.o RcppExports.o WinDrive.o rxInv.o rxData.o etTran.o et.o rxStack.o cvPost.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [RxODE.so] Error 1 -ERROR: compilation failed for package ‘RxODE’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RxODE/new/RxODE.Rcheck/RxODE’ - -``` -### CRAN - -``` -* installing *source* package ‘RxODE’ ... -** package ‘RxODE’ successfully unpacked and MD5 sums checked -** using staged installation -checking for gcc... clang -mmacosx-version-min=10.13 -checking whether the C compiler works... yes -checking for C compiler default output file name... a.out -checking for suffix of executables... -checking whether we are cross compiling... no -checking for suffix of object files... o -checking whether we are using the GNU C compiler... yes -checking whether clang -mmacosx-version-min=10.13 accepts -g... yes -checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed -checking for clang -mmacosx-version-min=10.13 option to support OpenMP... unsupported -configure: creating ./config.status -config.status: creating src/Makevars ---------[begin src/Makevars]-------- -# -*- mode: makefile-gmake -*- -CXX_STD = CXX11 - -################################################################################ -## Package library flags. -PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) - -# Release options -PKG_CFLAGS = -D_isRxODE_ -PKG_CXXFLAGS = -D_isRxODE_ - - -SOURCES_C = call_dvode.c dop853.c tran.c omegaChol.c init.c par_solve.c cfode.c common.c corfailure.c correction.c daxpy.c ddot.c dgefa.c dgesl.c dscal.c fnorm.c idamax.c intdy.c lsoda.c methodswitch.c orderswitch.c prja.c scaleh.c solsy.c stoda.c vmnorm.c strdup_printf.c rprintf.c lincmt.c box.c -SOURCES_CPP = RcppExports.cpp WinDrive.cpp rxInv.cpp rxData.cpp etTran.cpp et.cpp rxStack.cpp cvPost.cpp -SOURCES_FORTAN = dlsoda.f opkda2.f - -OBJECTS = $(SOURCES_C:.c=.o) $(SOURCES_FORTAN:.f=.o) $(SOURCES_CPP:.cpp=.o) - -# strippedLib: $(SHLIB) -# if test -e "/usr/bin/strip"; then /usr/bin/strip -s $(SHLIB); fi - -.PHONY: all -# all: strippedLib -# $(SHLIB): mylibs -all: $(SHLIB) -# mylibs: -# $(CC) -I"$(R_INCLUDE_DIR)" $(CFLAGS) $(CPPFLAGS) $(SHLIB_CFLAGS) $(CPICFLAGS) -I../inst/include/ ../inst/include/RxODE_model.h || $(CC) --version - - ---------[end src/Makevars]-------- -** libs -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c call_dvode.c -o call_dvode.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dop853.c -o dop853.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c tran.c -o tran.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c omegaChol.c -o omegaChol.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c init.c -o init.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c par_solve.c -o par_solve.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c cfode.c -o cfode.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c common.c -o common.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c corfailure.c -o corfailure.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c correction.c -o correction.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c daxpy.c -o daxpy.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c ddot.c -o ddot.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dgefa.c -o dgefa.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dgesl.c -o dgesl.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c dscal.c -o dscal.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c fnorm.c -o fnorm.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c idamax.c -o idamax.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c intdy.c -o intdy.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c lsoda.c -o lsoda.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c methodswitch.c -o methodswitch.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c orderswitch.c -o orderswitch.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c prja.c -o prja.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c scaleh.c -o scaleh.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c solsy.c -o solsy.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c stoda.c -o stoda.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c vmnorm.c -o vmnorm.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c strdup_printf.c -o strdup_printf.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c rprintf.c -o rprintf.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c lincmt.c -o lincmt.o -clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -O3 -c box.c -o box.o -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c dlsoda.f -o dlsoda.o -dlsoda.f:705:0: - - 705 | IF (IREDO .EQ. 0) GO TO 690 - | -Warning: 'iredo' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:679:0: - - 679 | 170 RH = MAX(RH,HMIN/ABS(H)) - | -Warning: 'rh' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2874:0: - - 2874 | IF (IHIT) T = TCRIT - | -Warning: 'tcrit' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2874:0: Warning: 'ihit' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2615:0: - - 2615 | IF (H0 .NE. 0.0D0 .AND. (T + H0 - TCRIT)*H0 .GT. 0.0D0) - | -Warning: 'h0' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2537:0: - - 2537 | LEN1S = LEN1S + LENWM - | -Warning: 'lenwm' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2536:0: - - 2536 | IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2 - | -Warning: 'mu' may be used uninitialized in this function [-Wmaybe-uninitialized] -dlsoda.f:2536:0: Warning: 'ml' may be used uninitialized in this function [-Wmaybe-uninitialized] -gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c opkda2.f -o opkda2.o -opkda2.f:650:0: - - 650 | INTEGER FUNCTION IXSAV (IPAR, IVALUE, ISET) - | -Warning: '__result_ixsav' may be used uninitialized in this function [-Wmaybe-uninitialized] -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c WinDrive.cpp -o WinDrive.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxInv.cpp -o rxInv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxData.cpp -o rxData.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c etTran.cpp -o etTran.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c et.cpp -o et.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c rxStack.cpp -o rxStack.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/dparser/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/RxODE/PreciseSums/include' -I/usr/local/include -D_isRxODE_ -fPIC -Wall -O3 -c cvPost.cpp -o cvPost.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RxODE.so call_dvode.o dop853.o tran.o omegaChol.o init.o par_solve.o cfode.o common.o corfailure.o correction.o daxpy.o ddot.o dgefa.o dgesl.o dscal.o fnorm.o idamax.o intdy.o lsoda.o methodswitch.o orderswitch.o prja.o scaleh.o solsy.o stoda.o vmnorm.o strdup_printf.o rprintf.o lincmt.o box.o dlsoda.o opkda2.o RcppExports.o WinDrive.o rxInv.o rxData.o etTran.o et.o rxStack.o cvPost.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [RxODE.so] Error 1 -ERROR: compilation failed for package ‘RxODE’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/RxODE/old/RxODE.Rcheck/RxODE’ - -``` -# sarima - -
- -* Version: 0.8.2 -* Source code: https://github.com/cran/sarima -* URL: https://github.com/GeoBosh/sarima https://geobosh.github.io/sarima/ -* BugReports: https://github.com/GeoBosh/sarima/issues -* Date/Publication: 2020-03-02 10:30:02 UTC -* Number of recursive dependencies: 73 - -Run `revdep_details(,"sarima")` for more info - -
- -## In both - -* checking whether package ‘sarima’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/sarima/new/sarima.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘sarima’ ... -** package ‘sarima’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Kalman0b.cpp -o Kalman0b.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c arimaQ0.cpp -o arimaQ0.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o sarima.so Kalman0b.o RcppExports.o arimaQ0.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [sarima.so] Error 1 -ERROR: compilation failed for package ‘sarima’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/sarima/new/sarima.Rcheck/sarima’ - -``` -### CRAN - -``` -* installing *source* package ‘sarima’ ... -** package ‘sarima’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Kalman0b.cpp -o Kalman0b.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c arimaQ0.cpp -o arimaQ0.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/sarima/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c utils.cpp -o utils.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o sarima.so Kalman0b.o RcppExports.o arimaQ0.o utils.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [sarima.so] Error 1 -ERROR: compilation failed for package ‘sarima’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/sarima/old/sarima.Rcheck/sarima’ - -``` -# scanstatistics - -
- -* Version: 1.0.1 -* Source code: https://github.com/cran/scanstatistics -* URL: https://github.com/BenjaK/scanstatistics -* BugReports: https://github.com/BenjaK/scanstatistics/issues -* Date/Publication: 2018-01-24 12:37:44 UTC -* Number of recursive dependencies: 83 - -Run `revdep_details(,"scanstatistics")` for more info - -
- -## In both - -* checking whether package ‘scanstatistics’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scanstatistics/new/scanstatistics.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scanstatistics’ ... -** package ‘scanstatistics’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c probability_functions.cpp -o probability_functions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_bayes_negbin.cpp -o scan_bayes_negbin.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_negbin.cpp -o scan_eb_negbin.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_poisson.cpp -o scan_eb_poisson.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_zip.cpp -o scan_eb_zip.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_pb_perm.cpp -o scan_pb_perm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_pb_poisson.cpp -o scan_pb_poisson.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_utility.cpp -o scan_utility.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scanstatistics.so RcppExports.o probability_functions.o scan_bayes_negbin.o scan_eb_negbin.o scan_eb_poisson.o scan_eb_zip.o scan_pb_perm.o scan_pb_poisson.o scan_utility.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [scanstatistics.so] Error 1 -ERROR: compilation failed for package ‘scanstatistics’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scanstatistics/new/scanstatistics.Rcheck/scanstatistics’ - -``` -### CRAN - -``` -* installing *source* package ‘scanstatistics’ ... -** package ‘scanstatistics’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c probability_functions.cpp -o probability_functions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_bayes_negbin.cpp -o scan_bayes_negbin.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_negbin.cpp -o scan_eb_negbin.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_poisson.cpp -o scan_eb_poisson.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_eb_zip.cpp -o scan_eb_zip.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_pb_perm.cpp -o scan_pb_perm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_pb_poisson.cpp -o scan_pb_poisson.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scanstatistics/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scan_utility.cpp -o scan_utility.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scanstatistics.so RcppExports.o probability_functions.o scan_bayes_negbin.o scan_eb_negbin.o scan_eb_poisson.o scan_eb_zip.o scan_pb_perm.o scan_pb_poisson.o scan_utility.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [scanstatistics.so] Error 1 -ERROR: compilation failed for package ‘scanstatistics’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scanstatistics/old/scanstatistics.Rcheck/scanstatistics’ - -``` -# scfind - -
- -* Version: 1.9.0 -* Source code: https://github.com/cran/scfind -* URL: https://github.com/hemberg-lab/scfind -* BugReports: https://support.bioconductor.org/t/scfind/ -* Date/Publication: 2019-10-29 -* Number of recursive dependencies: 70 - -Run `revdep_details(,"scfind")` for more info - -
- -## In both - -* checking whether package ‘scfind’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scfind/new/scfind.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scfind’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scfind/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scfind/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c eliasFano.cpp -o eliasFano.o -eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable] - int rem; - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scfind.so RcppExports.o eliasFano.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [scfind.so] Error 1 -ERROR: compilation failed for package ‘scfind’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scfind/new/scfind.Rcheck/scfind’ - -``` -### CRAN - -``` -* installing *source* package ‘scfind’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c eliasFano.cpp -o eliasFano.o -eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable] - int rem; - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scfind.so RcppExports.o eliasFano.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [scfind.so] Error 1 -ERROR: compilation failed for package ‘scfind’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scfind/old/scfind.Rcheck/scfind’ - -``` -# scGPS - -
- -* Version: -* Source code: ??? -* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr -* BugReports: https://github.com/tidyverse/dplyr/issues -* Number of recursive dependencies: 0 - -Run `revdep_details(,"")` for more info - -
- -## Error before installation - -### Devel - -``` - - There are binary versions available but the source versions are later: - binary source needs_compilation -RcppParallel 5.0.0 5.0.1 TRUE -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - These will not be installed - - -Package which is only available in source form, and may need - compilation of C/C++/Fortran: ‘DESeq’ -installing the source package ‘reactome.db’ - - - -``` -### CRAN - -``` - - There are binary versions available but the source versions are later: - binary source needs_compilation -RcppParallel 5.0.0 5.0.1 TRUE -tidyr 1.0.2 1.0.3 TRUE - - Binaries will be installed - These will not be installed - - -Package which is only available in source form, and may need - compilation of C/C++/Fortran: ‘DESeq’ -installing the source package ‘reactome.db’ - - - -``` -# scmap - -
- -* Version: 1.10.0 -* Source code: https://github.com/cran/scmap -* URL: https://github.com/hemberg-lab/scmap -* BugReports: https://support.bioconductor.org/t/scmap/ -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 87 - -Run `revdep_details(,"scmap")` for more info - -
- -## In both - -* checking whether package ‘scmap’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scmap/new/scmap.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘scmap’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scmap.cpp -o scmap.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scmap.so RcppExports.o scmap.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [scmap.so] Error 1 -ERROR: compilation failed for package ‘scmap’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scmap/new/scmap.Rcheck/scmap’ - -``` -### CRAN - -``` -* installing *source* package ‘scmap’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/scmap/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c scmap.cpp -o scmap.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o scmap.so RcppExports.o scmap.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [scmap.so] Error 1 -ERROR: compilation failed for package ‘scmap’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/scmap/old/scmap.Rcheck/scmap’ - -``` -# SCORPIUS - -
- -* Version: 1.0.6 -* Source code: https://github.com/cran/SCORPIUS -* URL: http://github.com/rcannood/SCORPIUS -* BugReports: https://github.com/rcannood/SCORPIUS/issues -* Date/Publication: 2020-03-16 16:20:02 UTC -* Number of recursive dependencies: 116 - -Run `revdep_details(,"SCORPIUS")` for more info - -
- -## Newly broken - -* checking whether package ‘SCORPIUS’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCORPIUS/new/SCORPIUS.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SCORPIUS’ ... -** package ‘SCORPIUS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘as.tbl_cube’ is not exported by 'namespace:dplyr' -Execution halted -ERROR: lazy loading failed for package ‘SCORPIUS’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCORPIUS/new/SCORPIUS.Rcheck/SCORPIUS’ - -``` -### CRAN - -``` -* installing *source* package ‘SCORPIUS’ ... -** package ‘SCORPIUS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -*** copying figures -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (SCORPIUS) - -``` -# SCPME - -
- -* Version: 1.0 -* Source code: https://github.com/cran/SCPME -* URL: https://github.com/MGallow/SCPME -* BugReports: https://github.com/MGallow/SCPME/issues -* Date/Publication: 2018-08-13 09:00:09 UTC -* Number of recursive dependencies: 84 - -Run `revdep_details(,"SCPME")` for more info - -
- -## In both - -* checking whether package ‘SCPME’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCPME/new/SCPME.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SCPME’ ... -** package ‘SCPME’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c ADMM.cpp -o ADMM.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CV.cpp -o CV.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CVP.cpp -o CVP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c soft.cpp -o soft.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SCPME.so ADMM.o CV.o CVP.o RcppExports.o soft.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [SCPME.so] Error 1 -ERROR: compilation failed for package ‘SCPME’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCPME/new/SCPME.Rcheck/SCPME’ - -``` -### CRAN - -``` -* installing *source* package ‘SCPME’ ... -** package ‘SCPME’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c ADMM.cpp -o ADMM.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CV.cpp -o CV.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c CVP.cpp -o CVP.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SCPME/RcppProgress/include' -I/usr/local/include -fPIC -Wall -O3 -c soft.cpp -o soft.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SCPME.so ADMM.o CV.o CVP.o RcppExports.o soft.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [SCPME.so] Error 1 -ERROR: compilation failed for package ‘SCPME’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCPME/old/SCPME.Rcheck/SCPME’ - -``` -# selectKSigs - -
- -* Version: 1.0.0 -* Source code: https://github.com/cran/selectKSigs -* URL: https://github.com/USCbiostats/selectKSigs -* BugReports: https://github.com/USCbiostats/HiLDA/selectKSigs -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 126 - -Run `revdep_details(,"selectKSigs")` for more info - -
- -## In both - -* checking whether package ‘selectKSigs’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/selectKSigs/new/selectKSigs.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘selectKSigs’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c EMalgorithm.cpp -o EMalgorithm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c convertFromToVector.cpp -o convertFromToVector.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o selectKSigs.so EMalgorithm.o RcppExports.o convertFromToVector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -installing to /Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/selectKSigs/new/selectKSigs.Rcheck/00LOCK-selectKSigs/00new/selectKSigs/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so - Reason: image not found -Execution halted -ERROR: lazy loading failed for package ‘selectKSigs’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/selectKSigs/new/selectKSigs.Rcheck/selectKSigs’ - -``` -### CRAN - -``` -* installing *source* package ‘selectKSigs’ ... -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c EMalgorithm.cpp -o EMalgorithm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I/usr/local/include -fPIC -Wall -O3 -c convertFromToVector.cpp -o convertFromToVector.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o selectKSigs.so EMalgorithm.o RcppExports.o convertFromToVector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -installing to /Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/selectKSigs/old/selectKSigs.Rcheck/00LOCK-selectKSigs/00new/selectKSigs/libs -** R -** inst -** byte-compile and prepare package for lazy loading -Error: .onLoad failed in loadNamespace() for 'rjags', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/selectKSigs/rjags/libs/rjags.so - Reason: image not found -Execution halted -ERROR: lazy loading failed for package ‘selectKSigs’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/selectKSigs/old/selectKSigs.Rcheck/selectKSigs’ - -``` -# SimBIID - -
- -* Version: 0.1.4 -* Source code: https://github.com/cran/SimBIID -* URL: https://github.com/tjmckinley/SimBIID -* BugReports: https://github.com/tjmckinley/SimBIID/issues -* Date/Publication: 2020-03-03 11:40:05 UTC -* Number of recursive dependencies: 62 - -Run `revdep_details(,"SimBIID")` for more info - -
- -## In both - -* checking whether package ‘SimBIID’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SimBIID/new/SimBIID.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SimBIID’ ... -** package ‘SimBIID’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c adaptUpdate.cpp -o adaptUpdate.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrapParticleFilter.cpp -o bootstrapParticleFilter.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrapParticleFilterState.cpp -o bootstrapParticleFilterState.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c cholArma.cpp -o cholArma.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c mvrnormArma.cpp -o mvrnormArma.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pmcmc.cpp -o pmcmc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SimBIID.so RcppExports.o adaptUpdate.o bootstrapParticleFilter.o bootstrapParticleFilterState.o cholArma.o mvrnormArma.o pmcmc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [SimBIID.so] Error 1 -ERROR: compilation failed for package ‘SimBIID’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SimBIID/new/SimBIID.Rcheck/SimBIID’ - -``` -### CRAN - -``` -* installing *source* package ‘SimBIID’ ... -** package ‘SimBIID’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c adaptUpdate.cpp -o adaptUpdate.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrapParticleFilter.cpp -o bootstrapParticleFilter.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrapParticleFilterState.cpp -o bootstrapParticleFilterState.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c cholArma.cpp -o cholArma.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c mvrnormArma.cpp -o mvrnormArma.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SimBIID/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pmcmc.cpp -o pmcmc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SimBIID.so RcppExports.o adaptUpdate.o bootstrapParticleFilter.o bootstrapParticleFilterState.o cholArma.o mvrnormArma.o pmcmc.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [SimBIID.so] Error 1 -ERROR: compilation failed for package ‘SimBIID’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SimBIID/old/SimBIID.Rcheck/SimBIID’ - -``` -# simts - -
- -* Version: 0.1.1 -* Source code: https://github.com/cran/simts -* URL: https://github.com/SMAC-Group/simts, https://arxiv.org/pdf/1607.04543.pdf -* BugReports: https://github.com/SMAC-Group/simts/issues -* Date/Publication: 2019-07-21 22:20:02 UTC -* Number of recursive dependencies: 53 - -Run `revdep_details(,"simts")` for more info - -
- -## In both - -* checking whether package ‘simts’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/simts/new/simts.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘simts’ ... -** package ‘simts’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c additional_moments.cpp -o additional_moments.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c analytical_matrix_derivatives.cpp -o analytical_matrix_derivatives.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c arima_gmwm.cpp -o arima_gmwm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c armadillo_manipulations.cpp -o armadillo_manipulations.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c automatic_models.cpp -o automatic_models.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrappers.cpp -o bootstrappers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c complex_tools.cpp -o complex_tools.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c covariance_matrix.cpp -o covariance_matrix.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dwt.cpp -o dwt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gen_process.cpp -o gen_process.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gmwm_logic.cpp -o gmwm_logic.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c guess_values.cpp -o guess_values.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c idf_example.cpp -o idf_example.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c inference.cpp -o inference.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c lm.cpp -o lm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c model_selection.cpp -o model_selection.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c obj_mod.cpp -o obj_mod.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c objective_functions.cpp -o objective_functions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c polyroot.cpp -o polyroot.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c process_to_wv.cpp -o process_to_wv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c read_imu.cpp -o read_imu.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c robust_components.cpp -o robust_components.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rtoarmadillo.cpp -o rtoarmadillo.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rtruncated_normal.cpp -o rtruncated_normal.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sampler.cpp -o sampler.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sarma.cpp -o sarma.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c summary_inf_mod.cpp -o summary_inf_mod.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c transform_data.cpp -o transform_data.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ts_checks.cpp -o ts_checks.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ts_model_cpp.cpp -o ts_model_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wave_variance.cpp -o wave_variance.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wv_filters.cpp -o wv_filters.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o simts.so RcppExports.o additional_moments.o analytical_matrix_derivatives.o arima_gmwm.o armadillo_manipulations.o automatic_models.o bootstrappers.o complex_tools.o covariance_matrix.o dwt.o gen_process.o gmwm_logic.o guess_values.o idf_example.o inference.o lm.o model_selection.o obj_mod.o objective_functions.o polyroot.o process_to_wv.o read_imu.o robust_components.o rtoarmadillo.o rtruncated_normal.o sampler.o sarma.o summary_inf_mod.o transform_data.o ts_checks.o ts_model_cpp.o wave_variance.o wv_filters.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [simts.so] Error 1 -ERROR: compilation failed for package ‘simts’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/simts/new/simts.Rcheck/simts’ - -``` -### CRAN - -``` -* installing *source* package ‘simts’ ... -** package ‘simts’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c additional_moments.cpp -o additional_moments.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c analytical_matrix_derivatives.cpp -o analytical_matrix_derivatives.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c arima_gmwm.cpp -o arima_gmwm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c armadillo_manipulations.cpp -o armadillo_manipulations.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c automatic_models.cpp -o automatic_models.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bootstrappers.cpp -o bootstrappers.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c complex_tools.cpp -o complex_tools.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c covariance_matrix.cpp -o covariance_matrix.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c dwt.cpp -o dwt.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gen_process.cpp -o gen_process.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c gmwm_logic.cpp -o gmwm_logic.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c guess_values.cpp -o guess_values.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c idf_example.cpp -o idf_example.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c inference.cpp -o inference.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c lm.cpp -o lm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c model_selection.cpp -o model_selection.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c obj_mod.cpp -o obj_mod.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c objective_functions.cpp -o objective_functions.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c polyroot.cpp -o polyroot.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c process_to_wv.cpp -o process_to_wv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c read_imu.cpp -o read_imu.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c robust_components.cpp -o robust_components.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rtoarmadillo.cpp -o rtoarmadillo.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c rtruncated_normal.cpp -o rtruncated_normal.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sampler.cpp -o sampler.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sarma.cpp -o sarma.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c summary_inf_mod.cpp -o summary_inf_mod.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c transform_data.cpp -o transform_data.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ts_checks.cpp -o ts_checks.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ts_model_cpp.cpp -o ts_model_cpp.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wave_variance.cpp -o wave_variance.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/simts/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c wv_filters.cpp -o wv_filters.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o simts.so RcppExports.o additional_moments.o analytical_matrix_derivatives.o arima_gmwm.o armadillo_manipulations.o automatic_models.o bootstrappers.o complex_tools.o covariance_matrix.o dwt.o gen_process.o gmwm_logic.o guess_values.o idf_example.o inference.o lm.o model_selection.o obj_mod.o objective_functions.o polyroot.o process_to_wv.o read_imu.o robust_components.o rtoarmadillo.o rtruncated_normal.o sampler.o sarma.o summary_inf_mod.o transform_data.o ts_checks.o ts_model_cpp.o wave_variance.o wv_filters.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [simts.so] Error 1 -ERROR: compilation failed for package ‘simts’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/simts/old/simts.Rcheck/simts’ - -``` -# SpaCCr - -
- -* Version: 0.1.0 -* Source code: https://github.com/cran/SpaCCr -* Date/Publication: 2016-11-23 09:38:35 -* Number of recursive dependencies: 55 - -Run `revdep_details(,"SpaCCr")` for more info - -
- -## In both - -* checking whether package ‘SpaCCr’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SpaCCr/new/SpaCCr.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SpaCCr’ ... -** package ‘SpaCCr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c SpaCC.cpp -o SpaCC.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SpaCCr.so RcppExports.o SpaCC.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [SpaCCr.so] Error 1 -ERROR: compilation failed for package ‘SpaCCr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SpaCCr/new/SpaCCr.Rcheck/SpaCCr’ - -``` -### CRAN - -``` -* installing *source* package ‘SpaCCr’ ... -** package ‘SpaCCr’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/SpaCCr/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c SpaCC.cpp -o SpaCC.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SpaCCr.so RcppExports.o SpaCC.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [SpaCCr.so] Error 1 -ERROR: compilation failed for package ‘SpaCCr’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SpaCCr/old/SpaCCr.Rcheck/SpaCCr’ - -``` -# stcos - -
- -* Version: 0.2.1 -* Source code: https://github.com/cran/stcos -* URL: https://github.com/holans/ST-COS -* Date/Publication: 2019-12-06 06:10:02 UTC -* Number of recursive dependencies: 33 - -Run `revdep_details(,"stcos")` for more info - -
- -## In both - -* checking whether package ‘stcos’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/stcos/new/stcos.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘stcos’ ... -** package ‘stcos’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bisquare_basis.cpp -o bisquare_basis.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c eig.cpp -o eig.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pinv.cpp -o pinv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sample_Gamma0_VAR1.cpp -o sample_Gamma0_VAR1.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c seq_int.cpp -o seq_int.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o stcos.so RcppExports.o bisquare_basis.o eig.o pinv.o sample_Gamma0_VAR1.o seq_int.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [stcos.so] Error 1 -ERROR: compilation failed for package ‘stcos’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/stcos/new/stcos.Rcheck/stcos’ - -``` -### CRAN - -``` -* installing *source* package ‘stcos’ ... -** package ‘stcos’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c bisquare_basis.cpp -o bisquare_basis.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c eig.cpp -o eig.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c pinv.cpp -o pinv.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c sample_Gamma0_VAR1.cpp -o sample_Gamma0_VAR1.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/stcos/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c seq_int.cpp -o seq_int.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o stcos.so RcppExports.o bisquare_basis.o eig.o pinv.o sample_Gamma0_VAR1.o seq_int.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [stcos.so] Error 1 -ERROR: compilation failed for package ‘stcos’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/stcos/old/stcos.Rcheck/stcos’ - -``` -# TCGAbiolinks - -
- -* Version: 2.16.0 -* Source code: https://github.com/cran/TCGAbiolinks -* URL: https://github.com/BioinformaticsFMRP/TCGAbiolinks -* BugReports: https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues -* Date/Publication: 2020-05-06 -* Number of recursive dependencies: 293 - -Run `revdep_details(,"TCGAbiolinks")` for more info - -
- -## In both - -* checking whether package ‘TCGAbiolinks’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinks/new/TCGAbiolinks.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘TCGAbiolinks’ ... -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘DESeq’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘TCGAbiolinks’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinks/new/TCGAbiolinks.Rcheck/TCGAbiolinks’ - -``` -### CRAN - -``` -* installing *source* package ‘TCGAbiolinks’ ... -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘DESeq’ -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘TCGAbiolinks’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinks/old/TCGAbiolinks.Rcheck/TCGAbiolinks’ - -``` -# TCGAbiolinksGUI - -
- -* Version: 1.14.0 -* Source code: https://github.com/cran/TCGAbiolinksGUI -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 325 - -Run `revdep_details(,"TCGAbiolinksGUI")` for more info - -
- -## In both - -* checking whether package ‘TCGAbiolinksGUI’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinksGUI/new/TCGAbiolinksGUI.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘TCGAbiolinksGUI’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called 'DESeq' -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘TCGAbiolinksGUI’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinksGUI/new/TCGAbiolinksGUI.Rcheck/TCGAbiolinksGUI’ - -``` -### CRAN - -``` -* installing *source* package ‘TCGAbiolinksGUI’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called 'DESeq' -Calls: ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart -Execution halted -ERROR: lazy loading failed for package ‘TCGAbiolinksGUI’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TCGAbiolinksGUI/old/TCGAbiolinksGUI.Rcheck/TCGAbiolinksGUI’ - -``` -# telefit - -
- -* Version: 1.0.3 -* Source code: https://github.com/cran/telefit -* Date/Publication: 2020-02-03 21:00:02 UTC -* Number of recursive dependencies: 78 - -Run `revdep_details(,"telefit")` for more info - -
- -## In both - -* checking whether package ‘telefit’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/telefit/new/telefit.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘telefit’ ... -** package ‘telefit’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c GibbsSampler.cpp -o GibbsSampler.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RWSampler.cpp -o RWSampler.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c covs.cpp -o covs.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c distributions.cpp -o distributions.o -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c glm_gmrf.cpp -o glm_gmrf.o -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c mcstat.cpp -o mcstat.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c numAlg.cpp -o numAlg.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpglmmod.cpp -o stpglmmod.o -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpmod.cpp -o stpmod.o -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -stpmod.cpp:470:32: warning: private field 'R' is not used [-Wunused-private-field] - double CProposed_logdet, one, R; - ^ -18 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpnotation.cpp -o stpnotation.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c svcMod.cpp -o svcMod.o -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c svcPredict.cpp -o svcPredict.o -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c transformations.cpp -o transformations.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o telefit.so GibbsSampler.o RWSampler.o RcppExports.o covs.o distributions.o glm_gmrf.o mcstat.o numAlg.o stpglmmod.o stpmod.o stpnotation.o svcMod.o svcPredict.o transformations.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [telefit.so] Error 1 -ERROR: compilation failed for package ‘telefit’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/telefit/new/telefit.Rcheck/telefit’ - -``` -### CRAN - -``` -* installing *source* package ‘telefit’ ... -** package ‘telefit’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c GibbsSampler.cpp -o GibbsSampler.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RWSampler.cpp -o RWSampler.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c covs.cpp -o covs.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c distributions.cpp -o distributions.o -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c glm_gmrf.cpp -o glm_gmrf.o -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c mcstat.cpp -o mcstat.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c numAlg.cpp -o numAlg.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpglmmod.cpp -o stpglmmod.o -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpmod.cpp -o stpmod.o -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -stpmod.cpp:470:32: warning: private field 'R' is not used [-Wunused-private-field] - double CProposed_logdet, one, R; - ^ -18 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c stpnotation.cpp -o stpnotation.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c svcMod.cpp -o svcMod.o -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c svcPredict.cpp -o svcPredict.o -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/telefit/RcppEigen/include' -I/usr/local/include -fPIC -Wall -O3 -c transformations.cpp -o transformations.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o telefit.so GibbsSampler.o RWSampler.o RcppExports.o covs.o distributions.o glm_gmrf.o mcstat.o numAlg.o stpglmmod.o stpmod.o stpnotation.o svcMod.o svcPredict.o transformations.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [telefit.so] Error 1 -ERROR: compilation failed for package ‘telefit’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/telefit/old/telefit.Rcheck/telefit’ - -``` -# TestDimorph - -
- -* Version: 0.3.1 -* Source code: https://github.com/cran/TestDimorph -* URL: https://github.com/bassam-abulnoor/TestDimorph -* BugReports: https://github.com/bassam-abulnoor/TestDimorph/issues -* Date/Publication: 2020-04-23 12:40:02 UTC -* Number of recursive dependencies: 185 - -Run `revdep_details(,"TestDimorph")` for more info - -
- -## In both - -* checking whether package ‘TestDimorph’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TestDimorph/new/TestDimorph.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘TestDimorph’ ... -** package ‘TestDimorph’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so - Reason: image not found -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘TestDimorph’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TestDimorph/new/TestDimorph.Rcheck/TestDimorph’ - -``` -### CRAN - -``` -* installing *source* package ‘TestDimorph’ ... -** package ‘TestDimorph’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in dyn.load(file, DLLpath = DLLpath, ...) : - unable to load shared object '/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so': - dlopen(/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so, 6): Library not loaded: /usr/local/gfortran/lib/libgomp.1.dylib - Referenced from: /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/TestDimorph/gmm/libs/gmm.so - Reason: image not found -Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load -Execution halted -ERROR: lazy loading failed for package ‘TestDimorph’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/TestDimorph/old/TestDimorph.Rcheck/TestDimorph’ - -``` -# tidybulk - -
- -* Version: -* Source code: ??? -* URL: https://dplyr.tidyverse.org, https://github.com/tidyverse/dplyr -* BugReports: https://github.com/tidyverse/dplyr/issues -* Number of recursive dependencies: 0 - -Run `revdep_details(,"")` for more info - -
- -## Error before installation - -### Devel - -``` - - There are binary versions available but the source versions are later: - binary source needs_compilation -GO.db 3.11.1 3.11.4 FALSE -httpuv 1.5.2 1.5.3.1 TRUE -nlme 3.1-147 3.1-148 TRUE -org.Hs.eg.db 3.11.1 3.11.4 FALSE -org.Rn.eg.db 3.11.1 3.11.4 FALSE -reticulate 1.15 1.16 TRUE - - Binaries will be installed - - -installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘org.Rn.eg.db’ - - - -``` -### CRAN - -``` - - There are binary versions available but the source versions are later: - binary source needs_compilation -GO.db 3.11.1 3.11.4 FALSE -httpuv 1.5.2 1.5.3.1 TRUE -nlme 3.1-147 3.1-148 TRUE -org.Hs.eg.db 3.11.1 3.11.4 FALSE -org.Rn.eg.db 3.11.1 3.11.4 FALSE -reticulate 1.15 1.16 TRUE - - Binaries will be installed - - -installing the source packages ‘GO.db’, ‘org.Hs.eg.db’, ‘org.Rn.eg.db’ - - - -``` -# ToxicoGx - -
- -* Version: 0.1.1 -* Source code: https://github.com/cran/ToxicoGx -* Date/Publication: 2020-01-20 17:00:24 UTC -* Number of recursive dependencies: 163 - -Run `revdep_details(,"ToxicoGx")` for more info - -
- -## In both - -* checking whether package ‘ToxicoGx’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ToxicoGx/new/ToxicoGx.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘ToxicoGx’ ... -** package ‘ToxicoGx’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘cSetName’ is not exported by 'namespace:CoreGx' -Execution halted -ERROR: lazy loading failed for package ‘ToxicoGx’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ToxicoGx/new/ToxicoGx.Rcheck/ToxicoGx’ - -``` -### CRAN - -``` -* installing *source* package ‘ToxicoGx’ ... -** package ‘ToxicoGx’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘cSetName’ is not exported by 'namespace:CoreGx' -Execution halted -ERROR: lazy loading failed for package ‘ToxicoGx’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ToxicoGx/old/ToxicoGx.Rcheck/ToxicoGx’ - -``` -# VarSelLCM - -
- -* Version: 2.1.3 -* Source code: https://github.com/cran/VarSelLCM -* URL: http://varsellcm.r-forge.r-project.org/ -* Date/Publication: 2018-08-29 10:24:28 UTC -* Number of recursive dependencies: 73 - -Run `revdep_details(,"VarSelLCM")` for more info - -
- -## In both - -* checking whether package ‘VarSelLCM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/VarSelLCM/new/VarSelLCM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘VarSelLCM’ ... -** package ‘VarSelLCM’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Algorithm.cpp -o Algorithm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmCategorical.cpp -o AlgorithmCategorical.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmContinuous.cpp -o AlgorithmContinuous.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmInteger.cpp -o AlgorithmInteger.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmMixed.cpp -o AlgorithmMixed.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataCategorical.cpp -o DataCategorical.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataContinuous.cpp -o DataContinuous.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataInteger.cpp -o DataInteger.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataMixed.cpp -o DataMixed.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamCategorical.cpp -o ParamCategorical.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamContinuous.cpp -o ParamContinuous.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamInteger.cpp -o ParamInteger.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamMixed.cpp -o ParamMixed.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c VarSelLCMmixte.cpp -o VarSelLCMmixte.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEM.cpp -o XEM.o -XEM.cpp:63:14: warning: unused variable 'indicebest' [-Wunused-variable] - double indicebest = (loglikeSmall).max(index); - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMCategorical.cpp -o XEMCategorical.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMContinuous.cpp -o XEMContinuous.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMInteger.cpp -o XEMInteger.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMMixed.cpp -o XEMMixed.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMPen.cpp -o XEMPen.o -XEMPen.cpp:176:10: warning: unused variable 'repere' [-Wunused-variable] - int repere=0; - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VarSelLCM.so Algorithm.o AlgorithmCategorical.o AlgorithmContinuous.o AlgorithmInteger.o AlgorithmMixed.o DataCategorical.o DataContinuous.o DataInteger.o DataMixed.o ParamCategorical.o ParamContinuous.o ParamInteger.o ParamMixed.o RcppExports.o VarSelLCMmixte.o XEM.o XEMCategorical.o XEMContinuous.o XEMInteger.o XEMMixed.o XEMPen.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [VarSelLCM.so] Error 1 -ERROR: compilation failed for package ‘VarSelLCM’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/VarSelLCM/new/VarSelLCM.Rcheck/VarSelLCM’ - -``` -### CRAN - -``` -* installing *source* package ‘VarSelLCM’ ... -** package ‘VarSelLCM’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c Algorithm.cpp -o Algorithm.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmCategorical.cpp -o AlgorithmCategorical.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmContinuous.cpp -o AlgorithmContinuous.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmInteger.cpp -o AlgorithmInteger.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c AlgorithmMixed.cpp -o AlgorithmMixed.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataCategorical.cpp -o DataCategorical.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataContinuous.cpp -o DataContinuous.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataInteger.cpp -o DataInteger.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c DataMixed.cpp -o DataMixed.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamCategorical.cpp -o ParamCategorical.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamContinuous.cpp -o ParamContinuous.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamInteger.cpp -o ParamInteger.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c ParamMixed.cpp -o ParamMixed.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c VarSelLCMmixte.cpp -o VarSelLCMmixte.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEM.cpp -o XEM.o -XEM.cpp:63:14: warning: unused variable 'indicebest' [-Wunused-variable] - double indicebest = (loglikeSmall).max(index); - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMCategorical.cpp -o XEMCategorical.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMContinuous.cpp -o XEMContinuous.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMInteger.cpp -o XEMInteger.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMMixed.cpp -o XEMMixed.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/VarSelLCM/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c XEMPen.cpp -o XEMPen.o -XEMPen.cpp:176:10: warning: unused variable 'repere' [-Wunused-variable] - int repere=0; - ^ -1 warning generated. -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VarSelLCM.so Algorithm.o AlgorithmCategorical.o AlgorithmContinuous.o AlgorithmInteger.o AlgorithmMixed.o DataCategorical.o DataContinuous.o DataInteger.o DataMixed.o ParamCategorical.o ParamContinuous.o ParamInteger.o ParamMixed.o RcppExports.o VarSelLCMmixte.o XEM.o XEMCategorical.o XEMContinuous.o XEMInteger.o XEMMixed.o XEMPen.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [VarSelLCM.so] Error 1 -ERROR: compilation failed for package ‘VarSelLCM’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/VarSelLCM/old/VarSelLCM.Rcheck/VarSelLCM’ - -``` -# vlad - -
- -* Version: 0.2.0 -* Source code: https://github.com/cran/vlad -* BugReports: https://github.com/wittenberg/vlad/issues -* Date/Publication: 2018-12-06 08:50:03 UTC -* Number of recursive dependencies: 67 - -Run `revdep_details(,"vlad")` for more info - -
- -## In both - -* checking whether package ‘vlad’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/vlad/new/vlad.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘vlad’ ... -** package ‘vlad’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c eocusum_sim.cpp -o eocusum_sim.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c racusum_mc.cpp -o racusum_mc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c racusum_sim.cpp -o racusum_sim.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o vlad.so RcppExports.o eocusum_sim.o racusum_mc.o racusum_sim.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [vlad.so] Error 1 -ERROR: compilation failed for package ‘vlad’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/vlad/new/vlad.Rcheck/vlad’ - -``` -### CRAN - -``` -* installing *source* package ‘vlad’ ... -** package ‘vlad’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c eocusum_sim.cpp -o eocusum_sim.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c racusum_mc.cpp -o racusum_mc.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/vlad/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c racusum_sim.cpp -o racusum_sim.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o vlad.so RcppExports.o eocusum_sim.o racusum_mc.o racusum_sim.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [vlad.so] Error 1 -ERROR: compilation failed for package ‘vlad’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/vlad/old/vlad.Rcheck/vlad’ - -``` -# walker - -
- -* Version: 0.3.1-1 -* Source code: https://github.com/cran/walker -* URL: https://github.com/helske/walker -* BugReports: https://github.com/helske/walker/issues -* Date/Publication: 2020-01-23 15:50:02 UTC -* Number of recursive dependencies: 96 - -Run `revdep_details(,"walker")` for more info - -
- -## In both - -* checking whether package ‘walker’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/walker/new/walker.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘walker’ ... -** package ‘walker’ successfully unpacked and MD5 sums checked -** using staged installation -** libs - - -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Modules.cpp -o Modules.o -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core.hpp:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] -static void set_zero_all_adjoints() { - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core.hpp:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp:17:13: warning: 'static' function 'set_zero_all_adjoints_nested' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] -static void set_zero_all_adjoints_nested() { - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat.hpp:336: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp:5: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp:64:59: warning: unused typedef 'T_alpha_val' [-Wunused-local-typedef] - typename partials_return_type::type>::type T_alpha_val; - ^ -In file included from Modules.cpp:3: -./include/models.hpp:560:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] - typedef double local_scalar_t__; - ^ -./include/models.hpp:1384:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] - typedef double local_scalar_t__; - ^ -./include/models.hpp:2539:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] - typedef double local_scalar_t__; - ^ -./include/models.hpp:4561:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] - typedef double local_scalar_t__; - ^ -./include/models.hpp:7010:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] - typedef double local_scalar_t__; - ^ -25 warnings generated. - - -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. - - -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c predict.cpp -o predict.o -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o walker.so Modules.o RcppExports.o predict.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [walker.so] Error 1 -ERROR: compilation failed for package ‘walker’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/walker/new/walker.Rcheck/walker’ - -``` -### CRAN - -``` -* installing *source* package ‘walker’ ... -** package ‘walker’ successfully unpacked and MD5 sums checked -** using staged installation -** libs - - -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Modules.cpp -o Modules.o -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:22: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core.hpp:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] -static void set_zero_all_adjoints() { - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core.hpp:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp:17:13: warning: 'static' function 'set_zero_all_adjoints_nested' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] -static void set_zero_all_adjoints_nested() { - ^ -In file included from Modules.cpp:3: -In file included from ./include/models.hpp:18: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/rstaninc.hpp:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include/rstan/stan_fit.hpp:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/test_gradients.hpp:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/rev/mat.hpp:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat.hpp:336: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp:5: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp:64:59: warning: unused typedef 'T_alpha_val' [-Wunused-local-typedef] - typename partials_return_type::type>::type T_alpha_val; - ^ -In file included from Modules.cpp:3: -./include/models.hpp:560:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] - typedef double local_scalar_t__; - ^ -./include/models.hpp:1384:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] - typedef double local_scalar_t__; - ^ -./include/models.hpp:2539:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] - typedef double local_scalar_t__; - ^ -./include/models.hpp:4561:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] - typedef double local_scalar_t__; - ^ -./include/models.hpp:7010:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] - typedef double local_scalar_t__; - ^ -25 warnings generated. - - -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Core:535: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/LU:47: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Jacobi:29: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Cholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/QR:17: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Householder:27: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SVD:48: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Geometry:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCore:66: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/SparseQR:35: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:5: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. - - -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/StanHeaders/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/rstan/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/BH/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppArmadillo/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/walker/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -c predict.cpp -o predict.o -clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o walker.so Modules.o RcppExports.o predict.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [walker.so] Error 1 -ERROR: compilation failed for package ‘walker’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/walker/old/walker.Rcheck/walker’ - -``` -# weibulltools - -
- -* Version: 1.0.1 -* Source code: https://github.com/cran/weibulltools -* Date/Publication: 2019-01-29 16:10:03 UTC -* Number of recursive dependencies: 110 - -Run `revdep_details(,"weibulltools")` for more info - -
- -## In both - -* checking whether package ‘weibulltools’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/weibulltools/new/weibulltools.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘weibulltools’ ... -** package ‘weibulltools’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c em_mixture.cpp -o em_mixture.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c johnson_ranks.cpp -o johnson_ranks.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o weibulltools.so RcppExports.o em_mixture.o johnson_ranks.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [weibulltools.so] Error 1 -ERROR: compilation failed for package ‘weibulltools’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/weibulltools/new/weibulltools.Rcheck/weibulltools’ - -``` -### CRAN - -``` -* installing *source* package ‘weibulltools’ ... -** package ‘weibulltools’ successfully unpacked and MD5 sums checked -** using staged installation -** libs -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c RcppExports.cpp -o RcppExports.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c em_mixture.cpp -o em_mixture.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/dplyr/old/Rcpp/include' -I'/Users/romainfrancois/git/revdep/dplyr/revdep/library.noindex/weibulltools/RcppArmadillo/include' -I/usr/local/include -fPIC -Wall -O3 -c johnson_ranks.cpp -o johnson_ranks.o -clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o weibulltools.so RcppExports.o em_mixture.o johnson_ranks.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [weibulltools.so] Error 1 -ERROR: compilation failed for package ‘weibulltools’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/weibulltools/old/weibulltools.Rcheck/weibulltools’ - -``` -# XBSeq - -
- -* Version: 1.20.0 -* Source code: https://github.com/cran/XBSeq -* URL: https://github.com/Liuy12/XBSeq -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 111 - -Run `revdep_details(,"XBSeq")` for more info - -
- -## In both - -* R CMD check timed out - - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘DESeq’ - ``` - -* checking whether the namespace can be loaded with stated dependencies ... NOTE - ``` - Warning: no function found corresponding to methods exports from ‘XBSeq’ for: ‘conditions’, ‘conditions<-’, ‘dispTable’ - - A namespace must be able to be loaded with just the base namespace - loaded: otherwise if the namespace gets loaded by a saved object, the - session will be unable to start. - - Probably some imports need to be declared in the NAMESPACE file. - ``` - -* checking R code for possible problems ... NOTE - ``` - ... - estimateRealCount,XBSeqDataSet: no visible global function definition - for ‘assay’ - estimateRealCount,XBSeqDataSet: no visible global function definition - for ‘assay<-’ - estimateSCV,XBSeqDataSet: no visible global function definition for - ‘conditions’ - estimateSCV,XBSeqDataSet: no visible global function definition for - ‘dispTable<-’ - Undefined global functions or variables: - ..count.. DataFrame Gamma Group Sample SummarizedExperiment assay - assay<- assays baseMean coefficients complete.cases conditions cor - data ddelap dispTable dispTable<- dnbinom dpois formula glm - log2FoldChange median optim p.adjust pbeta predict qbeta quantile - rnbinom scvBiasCorrectionFits - Consider adding - importFrom("stats", "Gamma", "coefficients", "complete.cases", "cor", - "dnbinom", "dpois", "formula", "glm", "median", "optim", - "p.adjust", "pbeta", "predict", "qbeta", "quantile", - "rnbinom") - importFrom("utils", "data") - to your NAMESPACE file. - ``` - diff --git a/revdep/dplyr/problems.md b/revdep/dplyr/problems.md index 55bb6a0696..5290c2d001 100644 --- a/revdep/dplyr/problems.md +++ b/revdep/dplyr/problems.md @@ -1,66 +1,3 @@ -# AlphaBeta - -
- -* Version: 1.2.0 -* Source code: https://github.com/cran/AlphaBeta -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 89 - -Run `revdep_details(,"AlphaBeta")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - ... - Running examples in ‘AlphaBeta-Ex.R’ failed - The error most likely occurred in: - - > ### Name: buildPedigree - > ### Title: Building Pedigree - > ### Aliases: buildPedigree - > - > ### ** Examples - > - > # Get some toy data - > file <- system.file("extdata/dm/","nodelist.fn", package="AlphaBeta") - > df<-read.csv(file) - > df$filename <- gsub("^", paste0(dirname(dirname(file)),"/"), df$filename ) - > write.csv(df, file = paste0(dirname(file),"/", "tmp_nodelist.fn"), row.names=FALSE, quote=FALSE) - > file <- system.file("extdata/dm/","tmp_nodelist.fn", package="AlphaBeta") - > file2 <- system.file("extdata/dm/","edgelist.fn", package="AlphaBeta") - > buildPedigree(nodelist = file, edgelist=file2, cytosine="CG", posteriorMaxFilter=0.99) - constracting pedigree ... - Error in .subset2(x, i, exact = exact) : subscript out of bounds - Calls: buildPedigree ... cat -> paste0 -> [[ -> [[.data.frame -> - Execution halted - ``` - -## In both - -* checking top-level files ... NOTE - ``` - File - LICENSE - is not mentioned in the DESCRIPTION file. - ``` - -* checking R code for possible problems ... NOTE - ``` - ABplot: no visible binding for global variable ‘delta.t’ - ABplot: no visible binding for global variable ‘div.obs’ - BOOTmodel: multiple local function definitions for ‘divergence’ with - different formal arguments - plotPedigree: no visible binding for global variable ‘meth’ - plotPedigree: no visible binding for global variable ‘V1’ - plotPedigree: no visible binding for global variable ‘V2’ - Undefined global functions or variables: - V1 V2 delta.t div.obs meth - ``` - # amt
@@ -71,15 +8,15 @@ Run `revdep_details(,"AlphaBeta")` for more info * Date/Publication: 2020-04-28 12:10:02 UTC * Number of recursive dependencies: 167 -Run `revdep_details(,"amt")` for more info +Run `cloud_details(, "amt")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘tinytest.R’ Running the tests in ‘tests/tinytest.R’ failed. Last 13 lines of output: Running test_track.R.................. 56 tests OK @@ -99,50 +36,147 @@ Run `revdep_details(,"amt")` for more info Execution halted ``` -# BMSC +# anomalize
* Version: 0.2.0 -* Source code: https://github.com/cran/BMSC -* Date/Publication: 2019-04-16 15:25:42 UTC -* Number of recursive dependencies: 85 +* Source code: https://github.com/cran/anomalize +* URL: https://github.com/business-science/anomalize +* BugReports: https://github.com/business-science/anomalize/issues +* Date/Publication: 2019-09-21 04:10:03 UTC +* Number of recursive dependencies: 162 -Run `revdep_details(,"BMSC")` for more info +Run `cloud_details(, "anomalize")` for more info
## Newly broken -* checking tests ... +* checking examples ... ERROR + ``` + ... + + Attaching package: ‘dplyr’ + + The following objects are masked from ‘package:stats’: + + filter, lag + + The following objects are masked from ‘package:base’: + + intersect, setdiff, setequal, union + + > + > tidyverse_cran_downloads %>% + + ungroup() %>% + + filter(package == "tidyquant") %>% + + decompose_stl(count) + Error in time_frequency(data, period = frequency, message = message) : + Error time_frequency(): Cannot use on a grouped data frame. + Frequency should be performed on a single time series. + Calls: %>% ... withVisible -> -> decompose_stl -> time_frequency + Execution halted + ``` + +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: - ── 2. Error: predict inserts NA values at correct positions (not all variables i - argument is of length zero - Backtrace: - 1. testthat::expect_true(...) - 4. dplyr::all_equal(...) - 5. dplyr:::equal_data_frame(...) - 6. dplyr:::is_compatible_data_frame(...) + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 53 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 14 ] + 1. Error: returns a ggplot (@test-plot_anomalies.R#8) + 2. Error: returns a ggplot (@test-plot_anomaly_decomposition.R#10) + 3. Error: grouped_tbl_time works (@test-time_apply.R#11) + 4. Error: tbl_time works (@test-time_apply.R#17) + 5. Failure: single tbl_df (@test-time_decompose.R#20) + 6. Error: time_frequency works: period = 'auto' (@test-time_frequency.R#26) + 7. Error: time_frequency works: period = '1 month' (@test-time_frequency.R#35) + 8. Error: time_frequency works: period = 5 (@test-time_frequency.R#44) + 9. Error: time_trend works: period = 'auto' (@test-time_frequency.R#55) + 1. ... + + Error: testthat unit tests failed + Execution halted + ``` + +# applicable + +
+ +* Version: 0.0.1 +* Source code: https://github.com/cran/applicable +* URL: https://github.com/tidymodels/applicable +* Date/Publication: 2020-05-25 14:00:02 UTC +* Number of recursive dependencies: 98 + +Run `cloud_details(, "applicable")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + `actual_output` not equivalent to `expected`. + current is not list-like + + ── 3. Failure: `score_apd_pca_bridge` output is correct (@test-pca-score.R#84) + `actual_output` not equivalent to `expected`. + current is not list-like ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 57 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 2 ] - 1. Error: predict inserts NA values at correct positions (@test-predict.R#58) - 2. Error: predict inserts NA values at correct positions (not all variables in model) (@test-predict.R#74) + [ OK: 106 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 3 ] + 1. Failure: `score_apd_pca_numeric` pcs output matches `stats::predict` output (@test-pca-score.R#48) + 2. Failure: `score` pcs output matches `stats::predict` output (@test-pca-score.R#66) + 3. Failure: `score_apd_pca_bridge` output is correct (@test-pca-score.R#84) Error: testthat unit tests failed Execution halted ``` -## In both +# bdl -* checking installed package size ... NOTE +
+ +* Version: 1.0.2 +* Source code: https://github.com/cran/bdl +* URL: https://github.com/statisticspoland/R_Package_to_API_BDL +* BugReports: https://github.com/statisticspoland/R_Package_to_API_BDL/issues +* Date/Publication: 2020-04-01 13:40:03 UTC +* Number of recursive dependencies: 155 + +Run `cloud_details(, "bdl")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR ``` - installed size is 6.7Mb - sub-directories of 1Mb or more: - libs 6.2Mb + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + Component 4: Modes: numeric, character + Component 4: target is numeric, current is character + Component 5: Mean relative difference: 2.2 + Component 6: Modes: character, numeric + ... + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 34 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 4 ] + 1. Failure: Proper data (@test-requests.R#72) + 2. Failure: Proper data (@test-requests.R#127) + 3. Failure: Proper data (@test-requests.R#179) + 4. Failure: Proper data (@test-requests.R#244) + + Error: testthat unit tests failed + Execution halted ``` # cattonum @@ -156,15 +190,15 @@ Run `revdep_details(,"BMSC")` for more info * Date/Publication: 2020-02-09 12:30:06 UTC * Number of recursive dependencies: 71 -Run `revdep_details(,"cattonum")` for more info +Run `cloud_details(, "cattonum")` for more info ## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ══ testthat results ═══════════════════════════════════════════════════════════ @@ -184,18 +218,18 @@ Run `revdep_details(,"cattonum")` for more info Execution halted ``` -# circRNAprofiler +# codebook
-* Version: 1.2.0 -* Source code: https://github.com/cran/circRNAprofiler -* URL: https://github.com/Aufiero/circRNAprofiler -* BugReports: https://github.com/Aufiero/circRNAprofiler/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 214 +* Version: 0.8.2 +* Source code: https://github.com/cran/codebook +* URL: https://github.com/rubenarslan/codebook +* BugReports: https://github.com/rubenarslan/codebook/issues +* Date/Publication: 2020-01-09 16:20:07 UTC +* Number of recursive dependencies: 179 -Run `revdep_details(,"circRNAprofiler")` for more info +Run `cloud_details(, "codebook")` for more info
@@ -204,57 +238,89 @@ Run `revdep_details(,"circRNAprofiler")` for more info * checking examples ... ERROR ``` ... - + width = 6, - + species = "Hsapiens", - + rbp = TRUE, - + reverse = FALSE) - trying URL 'https://attract.cnic.es/attract/static/ATtRACT.zip' - downloaded 113 KB - - motifs.txt is empty or absent. Only - ATtRACT motifs will be analyzedError: Can't combine `..1$id` and `..2$id` . + > + > ### ** Examples + > + > # will generate figures in a temporary directory + > old_base_dir <- knitr::opts_knit$get("base.dir") + > knitr::opts_knit$set(base.dir = tempdir()) + > on.exit(knitr::opts_knit$set(base.dir = old_base_dir)) + > data("bfi") + > bfi <- bfi[, c("BFIK_open_1", "BFIK_open_1")] + > md <- codebook(bfi, survey_repetition = "single", metadata_table = FALSE) + No missing values. + Error: Argument 1 must be a data frame or a named atomic vector. Backtrace: █ - 1. ├─circRNAprofiler::getMotifs(...) - 2. │ └─circRNAprofiler:::.filterMotifs(...) - 3. │ └─circRNAprofiler:::.getUserAttractMotifs(species, reverse, pathToMotifs) - 4. │ └─dplyr::bind_rows(newMotifsFromFile[, c(1, 2)], newAttractRBPmotifs) - 5. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id) - 6. └─vctrs::vec_default_ptype2(...) - 7. └─vctrs::stop_incompatible_type(...) - 8. └─vctrs:::stop_incompatible(...) - 9. └─vctrs:::stop_vctrs(...) + 1. └─codebook::codebook(bfi, survey_repetition = "single", metadata_table = FALSE) + 2. └─codebook::metadata_jsonld(results) + 3. └─codebook::metadata_list(results) + 4. └─codebook::codebook_table(results) + 5. └─codebook:::skim_to_wide_labelled(results) + 6. └─dplyr::bind_rows(...) Execution halted ``` ## In both -* checking tests ... +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘graphics’ ‘jsonlite’ ‘pander’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 65 marked UTF-8 strings + ``` + +# collapse + +
+ +* Version: 1.2.1 +* Source code: https://github.com/cran/collapse +* BugReports: https://github.com/SebKrantz/collapse/issues +* Date/Publication: 2020-05-26 22:10:10 UTC +* Number of recursive dependencies: 82 + +Run `cloud_details(, "collapse")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: - 1. Error: annotateBSJs() generates the correct data structure (@test_annotateBSJs.R#10) - 2. Error: annotateBSJs() generates a data frame with the correct content (@test_annotateBSJs.R#33) - 3. Error: annotateBSJs() generates the correct data structure - when using random back-spliced junctions (@test_annotateBSJs.R#80) - 4. Error: annotateBSJs() generates a data frame with the correct content when using - random back-spliced junctions (@test_annotateBSJs.R#102) - 5. Error: annotateRepeats() generates the correct data structure (@test_annotateRepeats.R#8) - 6. Error: filterCirc() filters the data frame containing circRNA counts (@test_filterBSJs.R#13) - 7. Error: getBackSplicedJunctions() generates the correct data structure (@test_getBackSplicedJunctions.R#14) - 8. Error: mergeBSJunctions() generates a data frame with the correct content (@test_getBackSplicedJunctions.R#43) - 9. Error: getCircSeqs() generate the correct data structure (@test_getCircSeqs.R#9) - 1. ... - - Error: testthat unit tests failed - Execution halted + 34: withRestarts(testthat_abort_reporter = function() NULL, force(code)) + 35: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, { reporter$start_file(basename(path)) lister$start_file(basename(path)) source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap) reporter$.end_context() reporter$end_file() }) + 36: FUN(X[[i]], ...) + 37: lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap) + 38: force(code) + 39: doWithOneRestart(return(expr), restart) + 40: withOneRestart(expr, restarts[[1L]]) + 41: withRestarts(testthat_abort_reporter = function() NULL, force(code)) + 42: with_reporter(reporter = current_reporter, results <- lapply(paths, test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)) + 43: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap) + 44: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap) + 45: test_package_dir(package = package, test_path = test_path, filter = filter, reporter = reporter, ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap = wrap) + 46: test_check("collapse") + An irrecoverable exception occurred. R is aborting now ... + Segmentation fault ``` -* checking package dependencies ... NOTE +## In both + +* checking installed package size ... NOTE ``` - Packages suggested but not available for checking: - 'BSgenome.Mmusculus.UCSC.mm9', 'BSgenome.Mmusculus.UCSC.mm10' + installed size is 5.6Mb + sub-directories of 1Mb or more: + doc 1.9Mb + libs 2.1Mb ``` # CollapseLevels @@ -266,7 +332,7 @@ Run `revdep_details(,"circRNAprofiler")` for more info * Date/Publication: 2017-12-04 10:30:12 UTC * Number of recursive dependencies: 65 -Run `revdep_details(,"CollapseLevels")` for more info +Run `cloud_details(, "CollapseLevels")` for more info @@ -298,174 +364,123 @@ Run `revdep_details(,"CollapseLevels")` for more info Execution halted ``` -# cvms +# correlationfunnel
-* Version: 1.0.1 -* Source code: https://github.com/cran/cvms -* URL: https://github.com/ludvigolsen/cvms -* BugReports: https://github.com/ludvigolsen/cvms/issues -* Date/Publication: 2020-04-19 09:30:02 UTC -* Number of recursive dependencies: 120 +* Version: 0.1.0 +* Source code: https://github.com/cran/correlationfunnel +* URL: https://github.com/business-science/correlationfunnel +* BugReports: https://github.com/business-science/correlationfunnel/issues +* Date/Publication: 2019-08-06 09:30:09 UTC +* Number of recursive dependencies: 97 -Run `revdep_details(,"cvms")` for more info +Run `cloud_details(, "correlationfunnel")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: + + ── 4. Failure: Check correlation (@test-correlate.R#61) ─────────────────────── + nrow(marketing_correlated_tbl) not equal to 74. + 1/1 mismatches + [1] 65 - 74 == -9 + ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 3757 | SKIPPED: 61 | WARNINGS: 5 | FAILED: 12 ] - 1. Failure: the grid order is as expected with create_computation_grid() (@test_compational_grid.R#260) - 2. Failure: multinomial evaluations with one predicted class column is correctly unpacked in evaluate() (@test_evaluate.R#1361) - 3. Failure: multinomial evaluations with one predicted class column is correctly unpacked in evaluate() (@test_evaluate.R#1369) - 4. Failure: multinomial evaluations with one predicted class column is correctly unpacked in evaluate() (@test_evaluate.R#1377) - 5. Failure: multinomial evaluations with one predicted class column is correctly unpacked in evaluate() (@test_evaluate.R#1385) - 6. Failure: multinomial evaluations with one predicted class column is correctly unpacked in evaluate() (@test_evaluate.R#1393) - 7. Failure: evaluate() and confusion_matrix() has same metric values (@test_evaluate.R#4015) - 8. Failure: evaluate() and confusion_matrix() has same metric values (@test_evaluate.R#4054) - 9. Failure: evaluate() and evaluate_residuals() has same metric values (@test_evaluate.R#4104) - 1. ... + [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 4 ] + 1. Error: Check binarize - numeric (@test-binarize.R#47) + 2. Error: Check binarize - numeric (@test-binarize.R#45) + 3. Error: (unknown) (@test-binarize.R#45) + 4. Failure: Check correlation (@test-correlate.R#61) Error: testthat unit tests failed Execution halted ``` -# ddpcr - -
- -* Version: 1.14 -* Source code: https://github.com/cran/ddpcr -* URL: https://github.com/daattali/ddpcr -* BugReports: https://github.com/daattali/ddpcr/issues -* Date/Publication: 2020-03-23 18:00:06 UTC -* Number of recursive dependencies: 88 - -Run `revdep_details(,"ddpcr")` for more info - -
+## In both -## Newly broken +* checking installed package size ... NOTE + ``` + installed size is 5.4Mb + sub-directories of 1Mb or more: + doc 3.0Mb + help 1.6Mb + ``` -* checking whether package ‘ddpcr’ can be installed ... WARNING +* checking dependencies in R code ... NOTE ``` - Found the following significant warnings: - Warning: `mutate_()` is deprecated as of dplyr 0.7.0. - Warning: `select_()` is deprecated as of dplyr 0.7.0. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/ddpcr/new/ddpcr.Rcheck/00install.out’ for details. + Namespace in Imports field not imported from: ‘utils’ + All declared Imports should be used. ``` -# DEGreport +# cutpointr
-* Version: 1.24.0 -* Source code: https://github.com/cran/DEGreport -* URL: http://lpantano.github.io/DEGreport/ -* BugReports: https://github.com/lpantano/DEGreport/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 132 +* Version: 1.0.2 +* Source code: https://github.com/cran/cutpointr +* URL: https://github.com/thie1e/cutpointr +* BugReports: https://github.com/thie1e/cutpointr/issues +* Date/Publication: 2020-04-14 08:50:10 UTC +* Number of recursive dependencies: 78 -Run `revdep_details(,"DEGreport")` for more info +Run `cloud_details(, "cutpointr")` for more info
## Newly broken -* checking examples ... ERROR - ``` - ... - Error: Problem with `summarise()` input `n_genes`. - ✖ could not find function "n" - ℹ Input `n_genes` is `n()`. - ℹ The error occured in group 1: merge = "aFemale", cluster = 1, group = "Female", other = "a". - Backtrace: - █ - 1. └─DEGreport::degPatterns(ma, des, time = "group", col = "other") - 2. └─`%>%`(...) - 3. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) - 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 6. └─DEGreport:::`_fseq`(`_lhs`) - 7. └─magrittr::freduce(value, `_function_list`) - 8. └─function_list[[i]](value) - 9. ├─dplyr::summarise(., abundance = median(value), n_genes = n()) - 10. └─dplyr:::summarise.grouped_df(., abundance = median(value), n_genes = n()) - 11. └─dplyr:::summarise_cols(.data, ...) - - Backtrace: - █ - Execution halted - ``` - -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: - ✖ could not find function "n" - ℹ Input `n_genes` is `n()`. - ℹ The error occured in group 1: merge = "aFemale", cluster = 1, group = "Female", other = "a". - Backtrace: - 1. DEGreport::degPatterns(...) - 2. dplyr::group_by(...) - 9. dplyr::summarise(., abundance = median(value), n_genes = n()) - 11. dplyr:::summarise_cols(.data, ...) + names for target but not for current + + ── 4. Failure: boot_test works correctly (@test-cutpointr.R#1428) ───────────── + round(bt$p_adj, 3) not equal to c(1, 0.647, 0.731). + names for target but not for current ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 50 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 1 ] - 1. Error: (unknown) (@test_cluster.R#13) + [ OK: 499 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 4 ] + 1. Failure: boot_ci works correctly (@test-cutpointr.R#1394) + 2. Failure: boot_test works correctly (@test-cutpointr.R#1425) + 3. Failure: boot_test works correctly (@test-cutpointr.R#1426) + 4. Failure: boot_test works correctly (@test-cutpointr.R#1428) Error: testthat unit tests failed Execution halted ``` -## In both +# ddpcr -* checking for hidden files and directories ... NOTE - ``` - Found the following hidden files and directories: - .travis.yml - These were most likely included in error. See section ‘Package - structure’ in the ‘Writing R Extensions’ manual. - ``` +
-* checking R code for possible problems ... NOTE - ``` - ... - degMV: no visible binding for global variable ‘max_sd’ - degPatterns: no visible global function definition for ‘rowMedians’ - degPatterns: no visible binding for global variable ‘genes’ - degPatterns: no visible global function definition for ‘n’ - degPlotCluster: no visible binding for global variable ‘genes’ - degPlotCluster: no visible binding for global variable ‘cluster’ - degPlotWide : : no visible binding for global variable - ‘count’ - significants,TopTags: no visible binding for global variable ‘FDR’ - significants,TopTags: no visible binding for global variable ‘logFC’ - significants,list : : no visible binding for global variable - ‘gene’ - Undefined global functions or variables: - .x FDR base_mean boxplot cluster comp compare count counts covar - cutoff desc enrichGO fdr fdrtool gene genes itemConsensus k keys lm - log2FoldChange log2fc logFC max_sd min_median n p.value r ratios - rowMedians score simplify value_fc value_fdr x xend y yend - Consider adding - importFrom("graphics", "boxplot") - importFrom("stats", "lm") - to your NAMESPACE file. - ``` +* Version: 1.14 +* Source code: https://github.com/cran/ddpcr +* URL: https://github.com/daattali/ddpcr +* BugReports: https://github.com/daattali/ddpcr/issues +* Date/Publication: 2020-03-23 18:00:06 UTC +* Number of recursive dependencies: 88 -* checking Rd cross-references ... NOTE +Run `cloud_details(, "ddpcr")` for more info + +
+ +## Newly broken + +* checking whether package ‘ddpcr’ can be installed ... WARNING ``` - Package unavailable to check Rd xrefs: ‘fdrtool’ + Found the following significant warnings: + Warning: `mutate_()` is deprecated as of dplyr 0.7.0. + Warning: `select_()` is deprecated as of dplyr 0.7.0. + See ‘/tmp/workdir/ddpcr/new/ddpcr.Rcheck/00install.out’ for details. ``` # disk.frame @@ -479,7 +494,7 @@ Run `revdep_details(,"DEGreport")` for more info * Date/Publication: 2020-05-08 13:10:10 UTC * Number of recursive dependencies: 105 -Run `revdep_details(,"disk.frame")` for more info +Run `cloud_details(, "disk.frame")` for more info @@ -517,18 +532,17 @@ Run `revdep_details(,"disk.frame")` for more info Extensions’ manual. ``` -# DLMtool +# distrr
-* Version: 5.4.3 -* Source code: https://github.com/cran/DLMtool -* URL: http://www.datalimitedtoolkit.org/ -* BugReports: https://github.com/DLMtool/DLMtool/issues -* Date/Publication: 2020-04-16 21:20:10 UTC -* Number of recursive dependencies: 128 +* Version: 0.0.5 +* Source code: https://github.com/cran/distrr +* URL: https://gibonet.github.io/distrr, https://github.com/gibonet/distrr +* Date/Publication: 2019-01-03 10:50:06 UTC +* Number of recursive dependencies: 24 -Run `revdep_details(,"DLMtool")` for more info +Run `cloud_details(, "distrr")` for more info
@@ -537,37 +551,27 @@ Run `revdep_details(,"DLMtool")` for more info * checking examples ... ERROR ``` ... - > - > DCACs(1, DLMtool::Atlantic_mackerel, plot=TRUE) - TAC (median) - 5.885724 - > - > DCAC(1, DLMtool::Atlantic_mackerel, plot=TRUE) - TAC (median) - 5.299291 - > - > DCAC_40(1, DLMtool::Atlantic_mackerel, plot=TRUE) - TAC (median) - 6.860386 - > - > Data <- DLMtool::Atlantic_mackerel - > Data@LHYear <- 2005 - > DCAC4010(1, Data, plot=TRUE) - TAC (median) - 1.576309 - > - > DCAC_ML(1, DLMtool::SimulatedData, plot=TRUE) - libc++abi.dylib: __cxa_guard_acquire detected deadlock - ``` - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 5.6Mb - sub-directories of 1Mb or more: - R 2.0Mb - data 2.1Mb + > str(invented_wages) + tibble [1,000 × 5] (S3: tbl_df/data.frame) + $ gender : Factor w/ 2 levels "men","women": 1 2 1 2 1 1 1 2 2 2 ... + $ sector : Factor w/ 2 levels "secondary","tertiary": 2 1 2 2 1 1 2 1 2 1 ... + $ education : Factor w/ 3 levels "I","II","III": 3 2 2 2 2 1 3 1 2 2 ... + $ wage : num [1:1000] 8400 4200 5100 7400 4300 4900 5400 2900 4500 3000 ... + $ sample_weights: num [1:1000] 105 32 36 12 21 46 79 113 34 32 ... + > tmp <- dcc(.data = invented_wages, + + .variables = c("gender", "sector"), .fun = jointfun_) + Error: `vec_ptype2.tbl_df.tbl_df()` is implemented at C level. + This R function is purely indicative and should never be called. + Backtrace: + █ + 1. ├─distrr::dcc(...) + 2. │ └─distrr::dcc5(...) + 3. │ └─distrr:::prepare_data(...) + 4. │ └─dplyr::bind_cols(data_vars, data_others) + 5. │ └─vctrs::vec_cbind(!!!dots) + 6. └─vctrs:::vec_ptype2.tbl_df.tbl_df(...) + 7. └─vctrs:::stop_native_implementation("vec_ptype2.tbl_df.tbl_df") + Execution halted ``` # docxtools @@ -581,7 +585,7 @@ Run `revdep_details(,"DLMtool")` for more info * Date/Publication: 2019-02-09 18:43:13 UTC * Number of recursive dependencies: 75 -Run `revdep_details(,"docxtools")` for more info +Run `cloud_details(, "docxtools")` for more info @@ -613,9 +617,9 @@ Run `revdep_details(,"docxtools")` for more info Execution halted ``` -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 6. dplyr:::mutate_cols(.data, ...) @@ -646,15 +650,15 @@ Run `revdep_details(,"docxtools")` for more info * Date/Publication: 2018-06-13 22:03:03 UTC * Number of recursive dependencies: 69 -Run `revdep_details(,"driftR")` for more info +Run `cloud_details(, "driftR")` for more info ## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Attributes: < Component "class": Lengths (3, 1) differ (string compare on first 1) > @@ -674,58 +678,6 @@ Run `revdep_details(,"driftR")` for more info Execution halted ``` -# DuoClustering2018 - -
- -* Version: 1.6.0 -* Source code: https://github.com/cran/DuoClustering2018 -* Date/Publication: 2020-05-07 -* Number of recursive dependencies: 158 - -Run `revdep_details(,"DuoClustering2018")` for more info - -
- -## Newly broken - -* R CMD check timed out - - -* checking R code for possible problems ... NOTE - ``` - ... - plot_timing: no visible binding for global variable ‘dataset’ - plot_timing: no visible binding for global variable ‘method’ - plot_timing: no visible binding for global variable ‘run’ - plot_timing: no visible binding for global variable ‘k’ - plot_timing: no visible binding for global variable ‘cluster’ - plot_timing: no visible binding for global variable ‘trueclass’ - plot_timing: no visible binding for global variable ‘est_k’ - plot_timing: no visible binding for global variable ‘elapsed’ - plot_timing: no visible binding for global variable ‘sce’ - plot_timing: no visible binding for global variable ‘filtering’ - plot_timing: no visible binding for global variable ‘truenclust’ - plot_timing: no visible binding for global variable ‘median.elapsed’ - plot_timing: no visible binding for global variable ‘med.t’ - plot_timing: no visible binding for global variable ‘norm.time’ - plot_timing: no visible binding for global variable ‘medianelapsed’ - Undefined global functions or variables: - ARI ari.stab cell cluster data.wide dataset ds ds.norm elapsed - entropy est_k estnclust filtering k k_diff med.t medARI - median.elapsed median.stability medianARI medianelapsed method - norm.time run s s.norm s.true s.true.norm sce stability trueclass - truenclust - ``` - -## Newly fixed - -* checking whether package ‘DuoClustering2018’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/DuoClustering2018/old/DuoClustering2018.Rcheck/00install.out’ for details. - ``` - # easyr
@@ -737,25 +689,25 @@ Run `revdep_details(,"DuoClustering2018")` for more info * Date/Publication: 2020-03-20 18:10:05 UTC * Number of recursive dependencies: 92 -Run `revdep_details(,"easyr")` for more info +Run `cloud_details(, "easyr")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: - trying URL 'https://cloud.r-project.org/bin/macosx/contrib/4.0/plyr_1.8.6.tgz' - Content type 'application/x-gzip' length 1010994 bytes (987 KB) - ================================================== - downloaded 987 KB - + ** installing vignettes + ** testing if installed package can be loaded from temporary location + ** testing if installed package can be loaded from final location + ** testing if installed package keeps a record of temporary installation path + * DONE (doParallel) - The downloaded binary packages are in - /var/folders/4b/hn4fq98s6810s4ccv2f9hm2h0000gn/T//RtmpZ3Qqhi/downloaded_packages + The downloaded source packages are in + '/tmp/RtmpOadHAs/downloaded_packages' ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 286 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 2 ] 1. Failure: works as expected (@test_bindf-joinf.R#57) @@ -775,7 +727,7 @@ Run `revdep_details(,"easyr")` for more info * Date/Publication: 2018-02-04 19:06:12 UTC * Number of recursive dependencies: 108 -Run `revdep_details(,"eda4treeR")` for more info +Run `cloud_details(, "eda4treeR")` for more info @@ -827,7 +779,7 @@ Run `revdep_details(,"eda4treeR")` for more info * Date/Publication: 2020-03-03 00:20:02 UTC * Number of recursive dependencies: 73 -Run `revdep_details(,"egor")` for more info +Run `cloud_details(, "egor")` for more info @@ -860,7 +812,7 @@ Run `revdep_details(,"egor")` for more info * Date/Publication: 2019-01-23 20:30:03 UTC * Number of recursive dependencies: 65 -Run `revdep_details(,"episheet")` for more info +Run `cloud_details(, "episheet")` for more info @@ -892,9 +844,9 @@ Run `revdep_details(,"episheet")` for more info Execution halted ``` -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: @@ -914,6 +866,45 @@ Run `revdep_details(,"episheet")` for more info Execution halted ``` +# europepmc + +
+ +* Version: 0.3 +* Source code: https://github.com/cran/europepmc +* URL: http://github.com/ropensci/europepmc/ +* BugReports: http://github.com/ropensci/europepmc/issues +* Date/Publication: 2018-04-20 07:41:01 UTC +* Number of recursive dependencies: 77 + +Run `cloud_details(, "europepmc")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + 3. europepmc:::FUN(X[[i]], ...) + 4. europepmc::epmc_profile(queryforall, synonym) + 5. europepmc:::rebi_GET(...) + 6. europepmc:::rGET(...) + 7. httr::VERB(...) + 8. httr:::request_perform(req, hu$handle$handle) + 10. httr:::request_fetch.write_memory(req$output, req$url, handle) + 11. curl::curl_fetch_memory(url, handle = handle) + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 0 | SKIPPED: 17 | WARNINGS: 0 | FAILED: 1 ] + 1. Error: epmc_hits_trend synonym search works correctly (@test_epmc_hits_trend.R#39) + + Error: testthat unit tests failed + Execution halted + ``` + # expstudies
@@ -923,15 +914,15 @@ Run `revdep_details(,"episheet")` for more info * Date/Publication: 2019-06-14 11:20:03 UTC * Number of recursive dependencies: 53 -Run `revdep_details(,"expstudies")` for more info +Run `cloud_details(, "expstudies")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ══ testthat results ═══════════════════════════════════════════════════════════ @@ -951,18 +942,83 @@ Run `revdep_details(,"expstudies")` for more info Execution halted ``` -# fabletools +# fable
-* Version: 0.1.3 -* Source code: https://github.com/cran/fabletools +* Version: 0.2.0 +* Source code: https://github.com/cran/fable +* URL: https://fable.tidyverts.org, https://github.com/tidyverts/fable +* BugReports: https://github.com/tidyverts/fable/issues +* Date/Publication: 2020-04-22 13:12:08 UTC +* Number of recursive dependencies: 99 + +Run `cloud_details(, "fable")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + ✖ `vars` must be a character vector. + ℹ Input `cmp` is `map(.fit, components)`. + Backtrace: + █ + 1. └─`%>%`(...) + 2. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) + 3. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 5. └─`_fseq`(`_lhs`) + 6. └─magrittr::freduce(value, `_function_list`) + 7. ├─base::withVisible(function_list[[k]](value)) + 8. └─function_list[[k]](value) + 9. ├─generics::components(.) + 10. └─fabletools:::components.mdl_df(.) + 11. ├─dplyr::transmute(...) + 12. └─dplyr:::transmute.data.frame(...) + 13. ├─dplyr::mutate(.data, ..., .keep = "none") + 14. └─dplyr:::mutate.data.frame(.data, ..., .keep = "none") + 15. └─dplyr:::mutate_cols(.data, ...) + + +* Version: 0.1.3 +* Source code: https://github.com/cran/fabletools * URL: http://fabletools.tidyverts.org/, https://github.com/tidyverts/fabletools * BugReports: https://github.com/tidyverts/fabletools/issues * Date/Publication: 2020-03-24 07:10:02 UTC * Number of recursive dependencies: 92 -Run `revdep_details(,"fabletools")` for more info +Run `cloud_details(, "fabletools")` for more info @@ -994,9 +1050,9 @@ Run `revdep_details(,"fabletools")` for more info Execution halted ``` -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 21. tsibble:::retain_tsibble(mut_data, key(.data), index(.data)) @@ -1016,17 +1072,18 @@ Run `revdep_details(,"fabletools")` for more info Execution halted ``` -# fingertipscharts +# finalfit
-* Version: 0.0.10 -* Source code: https://github.com/cran/fingertipscharts -* BugReports: https://github.com/PublicHealthEngland/fingertipscharts/issues -* Date/Publication: 2019-10-07 15:00:03 UTC -* Number of recursive dependencies: 142 +* Version: 1.0.1 +* Source code: https://github.com/cran/finalfit +* URL: https://github.com/ewenharrison/finalfit +* BugReports: https://github.com/ewenharrison/finalfit/issues +* Date/Publication: 2020-04-21 11:50:02 UTC +* Number of recursive dependencies: 135 -Run `revdep_details(,"fingertipscharts")` for more info +Run `cloud_details(, "finalfit")` for more info
@@ -1035,60 +1092,29 @@ Run `revdep_details(,"fingertipscharts")` for more info * checking examples ... ERROR ``` ... - + -0.15, -0.05, 1.08), - + dps = NA) - Error: Column 5 must be named. - Backtrace: - █ - 1. └─fingertipscharts::area_profiles(...) - 2. └─fingertipscharts:::spine_rescaler(...) - 3. └─`%>%`(...) - 4. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) - 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 6. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 7. └─fingertipscharts:::`_fseq`(`_lhs`) - 8. └─magrittr::freduce(value, `_function_list`) - 9. └─function_list[[i]](value) - 10. └─tibble::rownames_to_column(., var = rlang::quo_text(indicator)) - 11. └─tibble:::repaired_names(c(unique(names2(df)), var)) - 12. └─tibble:::subclass_name_repair_errors(...) - 13. └─base::tryCatch(...) - 14. └─base:::tryCatchList(expr, classes, parentenv, handlers) - 15. ├─base:::tryCatchOne(... + mort_5yr mort_5yr.num n + 1 Alive 1 511 + 2 Died 2 404 + 3 NA 14 + + $counts[[19]] + sex.factor2 age.factor2 n + 1 M <60 years 204 + 2 M 60+ years 241 + 3 F <60 years 210 + 4 F 60+ years 274 + + + > + > # Select a tibble and expand + > out$counts[[9]] %>% + + print(n = Inf) + Error in print.default(m, ..., quote = quote, right = right, max = max) : + invalid 'na.print' specification + Calls: %>% ... print -> print.data.frame -> print -> print.default Execution halted ``` -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/a-l.R’ failed. - Last 13 lines of output: - 12. tibble:::subclass_name_repair_errors(...) - 13. base::tryCatch(...) - 14. base:::tryCatchList(expr, classes, parentenv, handlers) - 17. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) - 20. base:::tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) - 21. base:::tryCatchOne(expr, names, parentenv, handlers[[1L]]) - 22. value[[3L]](cond) - - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 1 | SKIPPED: 15 | WARNINGS: 0 | FAILED: 2 ] - 1. Error: (unknown) (@test-area-profiles.R#25) - 2. Error: (unknown) (@test-examples.R#141) - - Error: testthat unit tests failed - Execution halted - ``` - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘curl’ ‘mapproj’ - All declared Imports should be used. - ``` - # foieGras
@@ -1100,7 +1126,7 @@ Run `revdep_details(,"fingertipscharts")` for more info * Date/Publication: 2019-10-07 22:10:03 UTC * Number of recursive dependencies: 100 -Run `revdep_details(,"foieGras")` for more info +Run `cloud_details(, "foieGras")` for more info
@@ -1132,16 +1158,16 @@ Run `revdep_details(,"foieGras")` for more info New names: ``` -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── 2. Error: (unknown) (@test-plot.R#7) ─────────────────────────────────────── Can't subset columns that don't exist. ✖ Column `shut.up` doesn't exist. Backtrace: - 1. base::plot(fssm, what = "fitted") + 1. graphics::plot(fssm, what = "fitted") 31. vctrs:::stop_subscript_oob(...) 32. vctrs:::stop_subscript(...) @@ -1158,9 +1184,9 @@ Run `revdep_details(,"foieGras")` for more info * checking installed package size ... NOTE ``` - installed size is 13.7Mb + installed size is 35.2Mb sub-directories of 1Mb or more: - libs 12.4Mb + libs 34.0Mb ``` # geometr @@ -1174,15 +1200,15 @@ Run `revdep_details(,"foieGras")` for more info * Date/Publication: 2020-03-30 10:20:02 UTC * Number of recursive dependencies: 86 -Run `revdep_details(,"geometr")` for more info +Run `cloud_details(, "geometr")` for more info ## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Simple feature collection with 100 features and 14 fields @@ -1210,49 +1236,6 @@ Run `revdep_details(,"geometr")` for more info All declared Imports should be used. ``` -# geomnet - -
- -* Version: 0.2.0 -* Source code: https://github.com/cran/geomnet -* URL: http://github.com/sctyner/geomnet -* BugReports: https://github.com/sctyner/geomnet/issues -* Date/Publication: 2016-12-08 20:38:18 -* Number of recursive dependencies: 93 - -Run `revdep_details(,"geomnet")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - ... - ℹ Input `wt` is `n()`. - ℹ The error occured in group 1: from_id = "A-", to_id = "A+". - Backtrace: - █ - 1. ├─(function (x, ...) ... - 2. └─ggplot2:::print.ggplot(x) - 3. ├─ggplot2::ggplot_build(x) - 4. └─ggplot2:::ggplot_build.ggplot(x) - 5. └─ggplot2:::by_layer(function(l, d) l$compute_statistic(d, layout)) - 6. └─ggplot2:::f(l = layers[[i]], d = data[[i]]) - 7. └─l$compute_statistic(d, layout) - 8. └─ggplot2:::f(..., self = self) - 9. └─self$stat$compute_layer(data, params, layout) - 10. └─geomnet:::f(..., self = self) - 11. └─self$compute_panel(...) - 12. └─geomnet:::f(..., self = self) - 13. └─self$compute_network(...) - 14. └─geomnet:::f(...) - 15. ├─dplyr::summarise(edges, wt = n()) - 16. - Execution halted - ``` - # getTBinR
@@ -1264,15 +1247,16 @@ Run `revdep_details(,"geomnet")` for more info * Date/Publication: 2019-09-03 13:50:06 UTC * Number of recursive dependencies: 149 -Run `revdep_details(,"getTBinR")` for more info +Run `cloud_details(, "getTBinR")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘spelling.R’ + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Attributes: < Names: 2 string mismatches > @@ -1303,7 +1287,7 @@ Run `revdep_details(,"getTBinR")` for more info * Date/Publication: 2018-07-03 21:50:02 UTC * Number of recursive dependencies: 79 -Run `revdep_details(,"ggedit")` for more info +Run `cloud_details(, "ggedit")` for more info @@ -1354,15 +1338,15 @@ Run `revdep_details(,"ggedit")` for more info * Date/Publication: 2020-03-29 18:30:05 UTC * Number of recursive dependencies: 111 -Run `revdep_details(,"gratia")` for more info +Run `cloud_details(, "gratia")` for more info ## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘test-all.R’ Running the tests in ‘tests/test-all.R’ failed. Last 13 lines of output: Backtrace: @@ -1382,6 +1366,46 @@ Run `revdep_details(,"gratia")` for more info Execution halted ``` +# groupedstats + +
+ +* Version: 1.0.0 +* Source code: https://github.com/cran/groupedstats +* URL: https://indrajeetpatil.github.io/groupedstats/, https://github.com/IndrajeetPatil/groupedstats/ +* BugReports: https://github.com/IndrajeetPatil/groupedstats/issues/ +* Date/Publication: 2020-05-05 16:20:03 UTC +* Number of recursive dependencies: 120 + +Run `cloud_details(, "groupedstats")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + + ── 5. Failure: grouped_proptest works - with NAs (@test-grouped_proptest.R#111) + df2$statistic not equal to c(...). + names for target but not for current + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 30 | SKIPPED: 4 | WARNINGS: 0 | FAILED: 5 ] + 1. Failure: grouped_proptest works - without NAs (@test-grouped_proptest.R#37) + 2. Failure: grouped_proptest works - without NAs (@test-grouped_proptest.R#49) + 3. Failure: grouped_proptest works - without NAs (@test-grouped_proptest.R#52) + 4. Failure: grouped_proptest works - with NAs (@test-grouped_proptest.R#87) + 5. Failure: grouped_proptest works - with NAs (@test-grouped_proptest.R#111) + + Error: testthat unit tests failed + Execution halted + ``` + # HaDeX
@@ -1391,7 +1415,7 @@ Run `revdep_details(,"gratia")` for more info * Date/Publication: 2020-02-06 13:50:02 UTC * Number of recursive dependencies: 127 -Run `revdep_details(,"HaDeX")` for more info +Run `cloud_details(, "HaDeX")` for more info
@@ -1423,9 +1447,10 @@ Run `revdep_details(,"HaDeX")` for more info Execution halted ``` -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘spelling.R’ + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: @@ -1465,7 +1490,7 @@ Run `revdep_details(,"HaDeX")` for more info * Date/Publication: 2020-02-28 18:00:05 UTC * Number of recursive dependencies: 119 -Run `revdep_details(,"healthcareai")` for more info +Run `cloud_details(, "healthcareai")` for more info @@ -1508,15 +1533,15 @@ Run `revdep_details(,"healthcareai")` for more info * Date/Publication: 2019-09-10 22:50:10 UTC * Number of recursive dependencies: 126 -Run `revdep_details(,"idmodelr")` for more info +Run `cloud_details(, "idmodelr")` for more info ## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── 4. Failure: generate_parameter_permutations can use a single parameter sample @@ -1536,223 +1561,250 @@ Run `revdep_details(,"idmodelr")` for more info Execution halted ``` -# isomiRs +# immunarch
-* Version: 1.16.1 -* Source code: https://github.com/cran/isomiRs -* BugReports: https://github.com/lpantano/isomiRs/issues -* Date/Publication: 2020-05-26 -* Number of recursive dependencies: 148 +* Version: 0.6.4 +* Source code: https://github.com/cran/immunarch +* URL: https://immunarch.com/, https://github.com/immunomind/immunarch +* BugReports: https://github.com/immunomind/immunarch/issues +* Date/Publication: 2020-05-13 08:00:02 UTC +* Number of recursive dependencies: 167 -Run `revdep_details(,"isomiRs")` for more info +Run `cloud_details(, "immunarch")` for more info
## Newly broken -* checking tests ... +* checking examples ... ERROR ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - ℹ The error occured in group 1: merge = "one_groupcontrol_1", cluster = 1, xaxis = "control_1", colored = "one_group". - Backtrace: - 1. testthat::expect_equal(unique(.cluster_exp(gene)), c(1, 2)) - 5. isomiRs:::.cluster_exp(gene) - 6. DEGreport::degPatterns(ma, meta, time = "xaxis", minc = 0, plot = FALSE) - 4. dplyr::group_by(...) - 11. dplyr::summarise(., abundance = median(value), n_genes = n()) - 16. dplyr:::summarise_cols(.data, ...) - - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 27 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 1 ] - 1. Error: matrix (@test_calculus.R#23) - - Error: testthat unit tests failed - Execution halted + Running examples in ‘immunarch-Ex.R’ failed + The error most likely occurred in: + + > ### Name: pubRep + > ### Title: Create a repertoire of public clonotypes + > ### Aliases: pubRep publicRepertoire + > + > ### ** Examples + > + > # Subset the data to make the example faster to run + > immdata$data <- lapply(immdata$data, head, 2000) + > pr <- pubRep(immdata$data, .verbose=FALSE) + > vis(pr, "clonotypes", 1, 2) + Warning: You are using a dplyr method on a raw data.table, which will call the ``` ## In both +* checking installed package size ... NOTE + ``` + installed size is 7.8Mb + sub-directories of 1Mb or more: + data 2.1Mb + doc 4.2Mb + ``` + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘dbplyr’ + All declared Imports should be used. + ``` + +# IncucyteDRC + +
+ +* Version: 0.5.4 +* Source code: https://github.com/cran/IncucyteDRC +* URL: https://github.com/chapmandu2/IncucyteDRC +* BugReports: https://github.com/chapmandu2/IncucyteDRC/issues +* Date/Publication: 2016-04-23 14:21:03 +* Number of recursive dependencies: 119 + +Run `cloud_details(, "IncucyteDRC")` for more info + +
+ +## Newly broken + * checking examples ... ERROR ``` ... - Joining, by = "merge" - Error: Problem with `summarise()` input `n_genes`. - ✖ could not find function "n" - ℹ Input `n_genes` is `n()`. - ℹ The error occured in group 1: merge = "one_groupcontrol", cluster = 1, xaxis = "control", colored = "one_group". + ✖ could not find function "row_number" + ℹ Input `idx` is `row_number()`. + ℹ The error occured in group 1: sampleid = "PDD00017273", conc = 0.3703704. Backtrace: █ - 1. └─isomiRs::isoNetwork(...) - 2. └─isomiRs:::.viz_mirna_gene_enrichment(...) - 3. └─isomiRs:::.cluster_exp(...) - 4. └─DEGreport::degPatterns(ma, meta, time = "xaxis", minc = 0, plot = FALSE) - 5. └─`%>%`(...) - 6. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) - 7. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 8. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 9. └─DEGreport:::`_fseq`(`_lhs`) - 10. └─magrittr::freduce(value, `_function_list`) - 11. └─function_list[[i]](value) - 12. ├─dplyr::summarise(., abundance = median(value), n_genes = n()) - 13. + 1. └─IncucyteDRC::fitDoseResponseCurve(test_idrc_set) + 2. └─IncucyteDRC::exportDRCDataToDataFrame(idrc_set, include_control) + 3. └─`%>%`(...) + 4. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) + 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 6. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 7. └─IncucyteDRC:::`_fseq`(`_lhs`) + 8. └─magrittr::freduce(value, `_function_list`) + 9. └─function_list[[i]](value) + 10. ├─dplyr::mutate(., idx = row_number()) + 11. └─dplyr:::mutate.data.frame(., idx = row_number()) + 12. └─dplyr:::mutate_cols(.data, ...) + + Backtrace: + █ Execution halted ``` -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘targetscan.Hs.eg.db’ - ``` +# infer -* checking for hidden files and directories ... NOTE - ``` - Found the following hidden files and directories: - .travis.yml - These were most likely included in error. See section ‘Package - structure’ in the ‘Writing R Extensions’ manual. - ``` +
-* checking R code for possible problems ... NOTE - ``` - ... - ‘targetscan.Hs.egMIRNA’ - mirna2targetscan: no visible binding for global variable - ‘targetscan.Hs.egMIRBASE2FAMILY’ - mirna2targetscan: no visible binding for global variable - ‘targetscan.Hs.egTARGETS’ - mirna2targetscan: no visible binding for global variable - ‘targetscan.Hs.egTARGETSFULL’ - mirna2targetscan: no visible binding for global variable - ‘targetscan.Mm.egMIRNA’ - mirna2targetscan: no visible binding for global variable - ‘targetscan.Mm.egMIRBASE2FAMILY’ - mirna2targetscan: no visible binding for global variable - ‘targetscan.Mm.egTARGETS’ - mirna2targetscan: no visible binding for global variable - ‘targetscan.Mm.egTARGETSFULL’ - Undefined global functions or variables: - as.tibble changes hits iso_sample pct targetscan.Hs.egMIRBASE2FAMILY - targetscan.Hs.egMIRNA targetscan.Hs.egTARGETS - targetscan.Hs.egTARGETSFULL targetscan.Mm.egMIRBASE2FAMILY - targetscan.Mm.egMIRNA targetscan.Mm.egTARGETS - targetscan.Mm.egTARGETSFULL total - ``` - -# lans2r - -
- -* Version: 1.0.5 -* Source code: https://github.com/cran/lans2r -* URL: https://github.com/KopfLab/lans2r -* BugReports: https://github.com/KopfLab/lans2r/issues -* Date/Publication: 2017-05-24 04:25:53 UTC -* Number of recursive dependencies: 79 +* Version: 0.5.1 +* Source code: https://github.com/cran/infer +* URL: https://github.com/tidymodels/infer, https://infer.netlify.com/ +* BugReports: https://github.com/tidymodels/infer/issues +* Date/Publication: 2019-11-19 10:30:02 UTC +* Number of recursive dependencies: 115 -Run `revdep_details(,"lans2r")` for more info +Run `cloud_details(, "infer")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: - `... <- NULL` produced warnings. - - ── 2. Failure: test that transformation safety checks are in place (@test-transf - spread_data(bind_rows(a, b)) not equal to full_join(...). - Names: 2 string mismatches - Component 3: Mean relative difference: 0.9281371 - Component 4: Mean relative difference: 7.749237 + gen_iris12 %>% calculate(stat = "count") not equal to `%>%`(...). + Attributes: < Names: 1 string mismatch > + Attributes: < Length mismatch: comparison on first 2 components > + Attributes: < Component 2: Modes: logical, numeric > + Attributes: < Component 2: Lengths: 1, 10 > + Attributes: < Component 2: target is logical, current is numeric > ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 142 | SKIPPED: 0 | WARNINGS: 7 | FAILED: 2 ] - 1. Failure: test that it is possible to load LANS maps (@test-load-data.R#81) - 2. Failure: test that transformation safety checks are in place (@test-transformations.R#13) + [ OK: 339 | SKIPPED: 60 | WARNINGS: 21 | FAILED: 3 ] + 1. Failure: chi-square matches chisq.test value (@test-calculate.R#219) + 2. Failure: chi-square matches chisq.test value (@test-calculate.R#236) + 3. Failure: calc_impl.count works (@test-calculate.R#473) Error: testthat unit tests failed Execution halted ``` -# LexisNexisTools +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘lifecycle’ + All declared Imports should be used. + ``` + +# iRF
-* Version: 0.3.0 -* Source code: https://github.com/cran/LexisNexisTools -* URL: https://github.com/JBGruber/LexisNexisTools -* BugReports: https://github.com/JBGruber/LexisNexisTools/issues -* Date/Publication: 2020-01-09 23:00:03 UTC -* Number of recursive dependencies: 134 +* Version: 2.0.0 +* Source code: https://github.com/cran/iRF +* URL: https://arxiv.org/abs/1706.08457 +* Date/Publication: 2017-07-26 04:57:45 UTC +* Number of recursive dependencies: 61 + +Run `cloud_details(, "iRF")` for more info + +
+ +## Newly broken + +* checking whether package ‘iRF’ can be installed ... WARNING + ``` + Found the following significant warnings: + Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. + See ‘/tmp/workdir/iRF/new/iRF.Rcheck/00install.out’ for details. + ``` + +# jpndistrict + +
+ +* Version: 0.3.6 +* Source code: https://github.com/cran/jpndistrict +* URL: https://uribo.github.io/jpndistrict +* BugReports: https://github.com/uribo/jpndistrict/issues +* Date/Publication: 2020-04-20 07:50:07 UTC +* Number of recursive dependencies: 101 -Run `revdep_details(,"LexisNexisTools")` for more info +Run `cloud_details(, "jpndistrict")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: - |++++++++++ | 20% ~00s - |+++++++++++++++ | 30% ~00s - |++++++++++++++++++++ | 40% ~00s - |+++++++++++++++++++++++++ | 50% ~00s - |++++++++++++++++++++++++++++++ | 60% ~00s - |+++++++++++++++++++++++++++++++++++ | 70% ~00s - |++++++++++++++++++++++++++++++++++++++++ | 80% ~00s - |+++++++++++++++++++++++++++++++++++++++++++++ | 90% ~00s - |++++++++++++++++++++++++++++++++++++++++++++++++++| 100% elapsed=00s + downloaded 9427 bytes + + options: ENCODING=cp932 + Reading layer `P34-14_47' from data source `/tmp/RtmpMd0GRu/P34-14_47_GML/P34-14_47.shp' using driver `ESRI Shapefile' + Simple feature collection with 65 features and 4 fields + geometry type: POINT + dimension: XY + bbox: xmin: 123.0045 ymin: 24.06092 xmax: 131.2989 ymax: 27.03917 + CRS: EPSG:4612 ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 97 | SKIPPED: 2 | WARNINGS: 0 | FAILED: 1 ] - 1. Failure: Convert LNToutput to tidytext (@test-lnt_convert.R#102) + [ OK: 93 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 1 ] + 1. Error: (unknown) (@test-export.R#3) Error: testthat unit tests failed Execution halted ``` -# mmetrics +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 188 marked UTF-8 strings + ``` + +# keyATM
-* Version: 0.3.0 -* Source code: https://github.com/cran/mmetrics -* URL: https://github.com/y-bar/mmetrics -* BugReports: https://github.com/y-bar/mmetrics/issues -* Date/Publication: 2019-07-26 08:50:02 UTC -* Number of recursive dependencies: 96 +* Version: 0.2.0 +* Source code: https://github.com/cran/keyATM +* URL: https://keyatm.github.io/keyATM/ +* BugReports: https://github.com/keyATM/keyATM/issues +* Date/Publication: 2020-05-23 12:30:02 UTC +* Number of recursive dependencies: 108 -Run `revdep_details(,"mmetrics")` for more info +Run `cloud_details(, "keyATM")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: - + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| + 0% 10 20 30 40 50 60 70 80 90 100% + [----|----|----|----|----|----|----|----|----|----| + **************************************************| ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ] - 1. Error: summarize one key (@test-mmetrics.R#16) - 2. Error: summarize two keys (@test-mmetrics.R#21) - 3. Error: summarize all (@test-mmetrics.R#26) - 4. Error: mutate one key (@test-mmetrics.R#31) - 5. Error: mutate two keys (@test-mmetrics.R#36) - 6. Error: mutate all with (@test-mmetrics.R#41) - 7. Failure: mutate with non summarize mode to evaluate ratio (@test-mmetrics.R#48) - 8. Failure: not evaluatable metrics must be removed without error (@test-mmetrics.R#55) - 9. Error: not evaluatable metrics must be removed without error (@test-mmetrics.R#63) + [ OK: 38 | SKIPPED: 19 | WARNINGS: 0 | FAILED: 1 ] + 1. Error: Visualizing keywords (@test-Initialization.R#17) Error: testthat unit tests failed Execution halted @@ -1760,117 +1812,188 @@ Run `revdep_details(,"mmetrics")` for more info ## In both +* checking installed package size ... NOTE + ``` + installed size is 16.5Mb + sub-directories of 1Mb or more: + libs 16.1Mb + ``` + * checking dependencies in R code ... NOTE ``` - Namespaces in Imports field not imported from: - ‘magrittr’ ‘stringr’ + Namespace in Imports field not imported from: ‘quanteda’ All declared Imports should be used. ``` -# MSstatsTMT +# kiwisR
-* Version: 1.6.1 -* Source code: https://github.com/cran/MSstatsTMT -* URL: http://msstats.org/msstatstmt/ -* BugReports: https://groups.google.com/forum/#!forum/msstats -* Date/Publication: 2020-05-12 -* Number of recursive dependencies: 101 +* Version: 0.1.8 +* Source code: https://github.com/cran/kiwisR +* URL: https://github.com/rywhale/kiwisR +* BugReports: https://github.com/rywhale/kiwisR/issues +* Date/Publication: 2019-12-15 16:10:02 UTC +* Number of recursive dependencies: 71 -Run `revdep_details(,"MSstatsTMT")` for more info +Run `cloud_details(, "kiwisR")` for more info
## Newly broken -* checking examples ... ERROR - ``` - Running examples in ‘MSstatsTMT-Ex.R’ failed - The error most likely occurred in: - - > ### Name: dataProcessPlotsTMT - > ### Title: Visualization for explanatory data analysis - TMT experiment - > ### Aliases: dataProcessPlotsTMT - > - > ### ** Examples - > - > data(input.pd) - > quant.msstats <- proteinSummarization(input.pd, - + method="msstats", - + global_norm=TRUE, - + reference_norm=TRUE) - Joining, by = c("Run", "Channel") - Summarizing for Run : 161117_SILAC_HeLa_UPS1_TMT10_Mixture1_01.raw ( 1 of 15 ) - Error in `[.data.table`(raw, , require.col) : - j (the 2nd argument inside [...]) is a single symbol but column name 'require.col' is not found. Perhaps you intended DT[, ..require.col]. This difference to data.frame is deliberate and explained in FAQ 1.1. - Calls: proteinSummarization ... .protein.summarization.function -> dataProcess -> [ -> [.data.table - Execution halted - ``` - -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: - > test_check("MSstatsTMT") - ── 1. Error: proteinSummarization works (@test-proteinSummarization.R#5) ────── - j (the 2nd argument inside [...]) is a single symbol but column name 'require.col' is not found. Perhaps you intended DT[, ..require.col]. This difference to data.frame is deliberate and explained in FAQ 1.1. - Backtrace: - 1. MSstatsTMT::proteinSummarization(...) - 2. MSstatsTMT:::.protein.summarization.function(...) - 3. MSstats::dataProcess(...) - 5. data.table:::`[.data.table`(raw, , require.col) + > library(testthat) + > library(kiwisR) + > + > test_check("kiwisR") + ── 1. Failure: ki_station_list accepts custom return fields (vector or string) ( + `stn_cust_retr` not equal to `stn_cust_retr2`. + Component "station_id": 96 string mismatches + Component "station_no": 96 string mismatches ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 32 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] - 1. Error: proteinSummarization works (@test-proteinSummarization.R#5) + [ OK: 54 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] + 1. Failure: ki_station_list accepts custom return fields (vector or string) (@test_ki_station_list.R#71) Error: testthat unit tests failed Execution halted ``` -# neuropsychology +# lpirfs
-* Version: 0.5.0 -* Source code: https://github.com/cran/neuropsychology -* URL: https://github.com/neuropsychology/neuropsychology.R -* BugReports: https://github.com/neuropsychology/neuropsychology.R/issues -* Date/Publication: 2017-03-22 19:17:18 UTC -* Number of recursive dependencies: 154 +* Version: 0.1.7 +* Source code: https://github.com/cran/lpirfs +* BugReports: https://github.com/adaemmerp/lpirfs/issues +* Date/Publication: 2019-11-25 09:20:06 UTC +* Number of recursive dependencies: 135 -Run `revdep_details(,"neuropsychology")` for more info +Run `cloud_details(, "lpirfs")` for more info
## Newly broken -* checking examples ... ERROR +* checking tests ... ERROR ``` - ... - Error: Can't reconstruct data frame. - ✖ The `[` method for class must return a data frame. - ℹ It returned a . - Backtrace: - █ - 1. └─neuropsychology::describe(df) - 2. └─`%>%`(...) - 3. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) - 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 6. └─neuropsychology:::`_fseq`(`_lhs`) - 7. └─magrittr::freduce(value, `_function_list`) - 8. ├─base::withVisible(function_list[[k]](value)) - 9. └─function_list[[k]](value) - 10. ├─dplyr::transmute_(...) - 11. └─dplyr:::transmute_.default(...) - 12. ├─dplyr::transmute(.data, !!!dots) - 13. └─dplyr:::transmute.data.frame(.data, !!!dots) - 14. ├─dplyr::mutate(.data, ..., .keep = "none") - 15. └ - Execution halted + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + Backtrace: + 1. lpirfs::lp_nl_panel(...) + 6. plm:::model.frame.pdata.frame(...) + 8. Formula:::model.frame.Formula(...) + 10. stats::model.frame.default(...) + 11. [ base::eval(...) ] with 1 more call + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 168 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 3 ] + 1. Failure: Test that data is correctly computed. (@test-lp_lin_panel.R#737) + 2. Failure: Test that data is correctly computed. (@test-lp_lin_panel.R#783) + 3. Error: Check output of switching variable I (@test-lp_nl_panel.R#948) + + Error: testthat unit tests failed + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 8.4Mb + sub-directories of 1Mb or more: + libs 6.9Mb + ``` + +# mason + +
+ +* Version: 0.2.6 +* Source code: https://github.com/cran/mason +* URL: https://github.com/lwjohnst86/mason +* BugReports: https://github.com/lwjohnst86/mason/issues +* Date/Publication: 2018-07-05 12:20:02 UTC +* Number of recursive dependencies: 67 + +Run `cloud_details(, "mason")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + Component "estimate": Mean relative difference: 1.999997 + Component "std.error": Mean relative difference: 0.2627753 + Component "statistic": Mean relative difference: 1.789258 + Component "p.value": Mean relative difference: 1.333262 + Component "conf.low": Mean relative difference: 1.751052 + Component "conf.high": Mean relative difference: 1.316709 + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 76 | SKIPPED: 1 | WARNINGS: 7 | FAILED: 3 ] + 1. Failure: (for glm bi) results are equal to real results (no covar) (@test-glm-binomial.R#59) + 2. Failure: (for glm bi) results are equal to real results (with covar) (@test-glm-binomial.R#73) + 3. Failure: (for glm) results are equal to real results (with covar + int) (@test-glm-binomial.R#88) + + Error: testthat unit tests failed + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘ggplot2’, ‘pander’, ‘pixiedust’ + ``` + +# mcp + +
+ +* Version: 0.2.0 +* Source code: https://github.com/cran/mcp +* URL: http://lindeloev.github.io/mcp/, https://github.com/lindeloev/mcp +* BugReports: https://github.com/lindeloev/mcp/issues +* Date/Publication: 2020-01-09 16:30:02 UTC +* Number of recursive dependencies: 94 + +Run `cloud_details(, "mcp")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + 5. Failure: Good variance: + y ~ 1, ~0 + sigma(rel(1)), ~x + sigma(x), ~0 + sigma(rel(x)) (@test-runs.R#277) + 6. Failure: Good variance: + y ~ 1, ~0 + sigma(rel(1)), ~x + sigma(x), ~0 + sigma(rel(x)) (@test-runs.R#277) + 7. Failure: Good variance: + y ~ 1, 1 + (1 | id) ~ rel(1) + I(x^2) + sigma(rel(1) + x) (@test-runs.R#277) + 8. Failure: Good ARMA: + y ~ ar(1) + sigma(1 + x), ~ar(2, 1 + I(x^2)) + sigma(1) (@test-runs.R#277) + 9. Failure: Good ARMA: + y ~ ar(1) + sigma(1 + x), ~ar(2, 1 + I(x^2)) + sigma(1) (@test-runs.R#277) + 10. Failure: Good Poisson: + y ~ 1 + ar(1), ~1 + x + ar(2, 1 + x + I(x^3)) (@test-runs.R#277) + + Error: testthat unit tests failed + Execution halted ``` ## In both @@ -1878,22 +2001,20 @@ Run `revdep_details(,"neuropsychology")` for more info * checking dependencies in R code ... NOTE ``` Namespaces in Imports field not imported from: - ‘htmlTable’ ‘lme4’ ‘stringi’ + ‘bayesplot’ ‘methods’ ‘purrr’ All declared Imports should be used. ``` -# ngsReports +# metabolighteR
-* Version: 1.4.1 -* Source code: https://github.com/cran/ngsReports -* URL: https://github.com/steveped/ngsReports -* BugReports: https://github.com/steveped/ngsReports/issues -* Date/Publication: 2020-05-21 -* Number of recursive dependencies: 157 +* Version: 0.1.0 +* Source code: https://github.com/cran/metabolighteR +* Date/Publication: 2019-12-06 10:20:02 UTC +* Number of recursive dependencies: 47 -Run `revdep_details(,"ngsReports")` for more info +Run `cloud_details(, "metabolighteR")` for more info
@@ -1901,38 +2022,195 @@ Run `revdep_details(,"ngsReports")` for more info * checking examples ... ERROR ``` - ... - > # Load the FASTQC data as a FastqcDataList object - > fdl <- FastqcDataList(fl) + Running examples in ‘metabolighteR-Ex.R’ failed + The error most likely occurred in: + + > ### Name: get_studies + > ### Title: Get Studies + > ### Aliases: get_studies > - > # Export the top10 Overrepresented Sequences as a single fasta file - > faOut <- file.path(tempdir(), "top10.fa") - > overRep2Fasta(fdl, path = faOut) - Error: Problem with `summarise()` input `nFiles`. - ✖ could not find function "n" - ℹ Input `nFiles` is `n()`. - ℹ The error occured in group 1: Sequence = "AAAAATATGGAACGCTTCACGAATTTGCGTCATCCTTGCGCAGGGGCCAT". + > ### ** Examples + > + > get_studies() + Error in curl::curl_fetch_memory(url, handle = handle) : + Empty reply from server + Calls: get_studies ... request_fetch -> request_fetch.write_memory -> + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + Timeout was reached: [www.ebi.ac.uk:443] Operation timed out after 10001 milliseconds with 0 out of 0 bytes received + Backtrace: + 1. testthat::expect_true(tibble::is_tibble(get_studies())) + 5. metabolighteR::get_studies() + 9. httr::GET(paste0(getOption("BASE_URL"), "/studies")) + 10. httr:::request_perform(req, hu$handle$handle) + 12. httr:::request_fetch.write_memory(req$output, req$url, handle) + 13. curl::curl_fetch_memory(url, handle = handle) + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 0 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] + 1. Error: tokenless-calls (@test-tokenless.R#5) + + Error: testthat unit tests failed + Execution halted + ``` + +# metamicrobiomeR + +
+ +* Version: 1.1 +* Source code: https://github.com/cran/metamicrobiomeR +* URL: https://github.com/nhanhocu/metamicrobiomeR +* BugReports: https://github.com/nhanhocu/metamicrobiomeR/issues +* Date/Publication: 2019-09-03 07:20:02 UTC +* Number of recursive dependencies: 131 + +Run `cloud_details(, "metamicrobiomeR")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + > tl<-colnames(taxtab6)[grep("k__bacteria.p__fusobacteria",colnames(taxtab6))] + > taxacom.ex<-taxa.compare(taxtab=taxtab6[,c("personid","x.sampleid","bf","age.sample",tl)], + + propmed.rel="gamlss",comvar="bf",adjustvar="age.sample", + + longitudinal="yes",p.adjust.method="fdr") + Error: Corrupt `grouped_df` using old (< 0.8.0) format. + ℹ Strip off old grouping with `ungroup()`. Backtrace: - █ - 1. ├─ngsReports::overRep2Fasta(fdl, path = faOut) - 2. └─ngsReports::overRep2Fasta(fdl, path = faOut) - 3. ├─dplyr::summarise(...) - 4. └─dplyr:::summarise.grouped_df(...) - 5. └─dplyr:::summarise_cols(.data, ...) - + █ + 1. ├─metamicrobiomeR::taxa.compare(...) + 2. │ └─base::as.data.frame(taxtab) + 3. ├─taxtab6[, c("personid", "x.sampleid", "bf", "age.sample", tl)] + 4. └─dplyr:::`[.grouped_df`(...) + 5. └─dplyr:::group_intersect(x, out) + 6. ├─generics::intersect(group_vars(x), names(new)) + 7. ├─dplyr::group_vars(x) + 8. └─dplyr:::group_vars.data.frame(x) + 9. ├─generics::setdiff(names(group_data(x)), ".rows") + 10. ├─dplyr::group_data(x) + 11. └─dplyr:::group_data.grouped_df(x) + 12. └─dplyr::validate_grouped_df(.data) + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘RCurl’ ‘foreign’ ‘gplots’ ‘httr’ ‘jsonlite’ ‘knitr’ ‘lmerTest’ + ‘magrittr’ ‘mgcv’ ‘repmis’ ‘reshape2’ ‘rmarkdown’ + All declared Imports should be used. + ``` + +# mmetrics + +
+ +* Version: 0.3.0 +* Source code: https://github.com/cran/mmetrics +* URL: https://github.com/y-bar/mmetrics +* BugReports: https://github.com/y-bar/mmetrics/issues +* Date/Publication: 2019-07-26 08:50:02 UTC +* Number of recursive dependencies: 96 + +Run `cloud_details(, "mmetrics")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 12 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 9 ] + 1. Error: summarize one key (@test-mmetrics.R#16) + 2. Error: summarize two keys (@test-mmetrics.R#21) + 3. Error: summarize all (@test-mmetrics.R#26) + 4. Error: mutate one key (@test-mmetrics.R#31) + 5. Error: mutate two keys (@test-mmetrics.R#36) + 6. Error: mutate all with (@test-mmetrics.R#41) + 7. Failure: mutate with non summarize mode to evaluate ratio (@test-mmetrics.R#48) + 8. Failure: not evaluatable metrics must be removed without error (@test-mmetrics.R#55) + 9. Error: not evaluatable metrics must be removed without error (@test-mmetrics.R#63) + + Error: testthat unit tests failed + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘magrittr’ ‘stringr’ + All declared Imports should be used. + ``` + +# neuropsychology + +
+ +* Version: 0.5.0 +* Source code: https://github.com/cran/neuropsychology +* URL: https://github.com/neuropsychology/neuropsychology.R +* BugReports: https://github.com/neuropsychology/neuropsychology.R/issues +* Date/Publication: 2017-03-22 19:17:18 UTC +* Number of recursive dependencies: 154 + +Run `cloud_details(, "neuropsychology")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + Error: Can't reconstruct data frame. + ✖ The `[` method for class must return a data frame. + ℹ It returned a . Backtrace: - █ + █ + 1. └─neuropsychology::describe(df) + 2. └─`%>%`(...) + 3. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) + 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 6. └─neuropsychology:::`_fseq`(`_lhs`) + 7. └─magrittr::freduce(value, `_function_list`) + 8. ├─base::withVisible(function_list[[k]](value)) + 9. └─function_list[[k]](value) + 10. ├─dplyr::transmute_(...) + 11. └─dplyr:::transmute_.default(...) + 12. ├─dplyr::transmute(.data, !!!dots) + 13. └─dplyr:::transmute.data.frame(.data, !!!dots) + 14. ├─dplyr::mutate(.data, ..., .keep = "none") + 15. └ Execution halted ``` ## In both -* checking installed package size ... NOTE +* checking dependencies in R code ... NOTE ``` - installed size is 6.2Mb - sub-directories of 1Mb or more: - R 2.0Mb - doc 3.0Mb + Namespaces in Imports field not imported from: + ‘htmlTable’ ‘lme4’ ‘stringi’ + All declared Imports should be used. ``` # opentripplanner @@ -1946,15 +2224,15 @@ Run `revdep_details(,"ngsReports")` for more info * Date/Publication: 2020-04-14 17:20:03 UTC * Number of recursive dependencies: 69 -Run `revdep_details(,"opentripplanner")` for more info +Run `cloud_details(, "opentripplanner")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Content type 'application/octet-stream' length 126976 bytes (124 KB) @@ -1992,7 +2270,7 @@ Run `revdep_details(,"opentripplanner")` for more info * Date/Publication: 2020-05-27 10:00:03 UTC * Number of recursive dependencies: 101 -Run `revdep_details(,"pammtools")` for more info +Run `cloud_details(, "pammtools")` for more info @@ -2021,18 +2299,18 @@ Run `revdep_details(,"pammtools")` for more info Position: 3 Code: .add Docs: add ``` -# PAST +# panelr
-* Version: 1.4.1 -* Source code: https://github.com/cran/PAST -* URL: https://github.com/IGBB/past -* BugReports: https://github.com/IGBB/past/issues -* Date/Publication: 2020-04-30 -* Number of recursive dependencies: 97 +* Version: 0.7.2 +* Source code: https://github.com/cran/panelr +* URL: https://panelr.jacob-long.com +* BugReports: https://github.com/jacob-long/panelr +* Date/Publication: 2020-03-08 22:10:02 UTC +* Number of recursive dependencies: 169 -Run `revdep_details(,"PAST")` for more info +Run `cloud_details(, "panelr")` for more info
@@ -2040,74 +2318,55 @@ Run `revdep_details(,"PAST")` for more info * checking examples ... ERROR ``` - ... - Error: Problem with `mutate()` input `..1`. - ✖ Input `..1` must be a vector, not a `rlang_data_pronoun` object. - ℹ Input `..1` is `.data`. - Backtrace: - █ - 1. ├─utils::example("load_GWAS_data") - 2. │ └─base::source(...) - 3. │ ├─base::withVisible(eval(ei, envir)) - 4. │ └─base::eval(ei, envir) - 5. │ └─base::eval(ei, envir) - 6. └─PAST::load_GWAS_data(demo_association_file, demo_effects_file) /var/folders/4b/hn4fq98s6810s4ccv2f9hm2h0000gn/T//Rtmpo6QVx8/Rex350b4cf16ce3:11:0 - 7. └─`%>%`(...) - 8. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) - 9. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 10. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 11. └─PAST:::`_fseq`(`_lhs`) - 12. └─magrittr::freduce(value, `_function_list`) - 13. └─function_list[[i]](value) - 14. ├─dplyr::mutate(...) - 15. └─dplyr:::mutate.data.frame(...) + Running examples in ‘panelr-Ex.R’ failed + The error most likely occurred in: + + > ### Name: are_varying + > ### Title: Check if variables are constant or variable over time. + > ### Aliases: are_varying + > + > ### ** Examples + > + > + > wages <- panel_data(WageData, id = id, wave = t) + Warning: The `add` argument of `group_by()` is deprecated as of dplyr 1.0.0. + Please use the `.add` argument instead. + This warning is displayed once every 8 hours. + Call `lifecycle::last_warnings()` to see where this warning was generated. + > wages %>% are_varying(occ, ind, fem, blk) + Error in if (get_wave(data) %in% dots) NULL else get_wave(data) : + argument is of length zero + Calls: %>% ... freduce -> withVisible -> -> are_varying Execution halted ``` -## In both - -* checking whether package ‘PAST’ can be installed ... WARNING +* checking tests ... ERROR ``` - Found the following significant warnings: - Warning: replacing previous import ‘S4Vectors::union’ by ‘dplyr::union’ when loading ‘PAST’ - Warning: replacing previous import ‘S4Vectors::intersect’ by ‘dplyr::intersect’ when loading ‘PAST’ - Warning: replacing previous import ‘S4Vectors::setdiff’ by ‘dplyr::setdiff’ when loading ‘PAST’ - Warning: replacing previous import ‘S4Vectors::first’ by ‘dplyr::first’ when loading ‘PAST’ - Warning: replacing previous import ‘S4Vectors::setequal’ by ‘dplyr::setequal’ when loading ‘PAST’ - Warning: replacing previous import ‘S4Vectors::rename’ by ‘dplyr::rename’ when loading ‘PAST’ - Warning: replacing previous import ‘S4Vectors::tail’ by ‘utils::tail’ when loading ‘PAST’ - Warning: replacing previous import ‘S4Vectors::head’ by ‘utils::head’ when loading ‘PAST’ - Warning: replacing previous import ‘S4Vectors::complete.cases’ by ‘stats::complete.cases’ when loading ‘PAST’ - Warning: replacing previous import ‘S4Vectors::sd’ by ‘stats::sd’ when loading ‘PAST’ - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/PAST/new/PAST.Rcheck/00install.out’ for details. - ``` - -* checking Rd \usage sections ... WARNING - ``` - Undocumented arguments in documentation object 'assign_SNPs_to_genes' - ‘filter_type’ - - Functions with \usage entries need to have the appropriate \alias - entries, and all their arguments documented. - The \usage entries must correspond to syntactically valid R code. - See chapter ‘Writing R documentation files’ in the ‘Writing R - Extensions’ manual. + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 22 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 17 ] + 1. Failure: dplyr functions return panel_data objects (@test-utils.R#29) + 2. Error: widen_panel works (@test-utils.R#46) + 3. Error: long_panel works (basic case) (@test-utils.R#72) + 4. Error: long_panel works (unbalanced data) (@test-utils.R#96) + 5. Error: long_panel works (unbalanced data, numeric waves not begin w/ 1) (@test-utils.R#120) + 6. Error: long_panel works (character periods) (@test-utils.R#146) + 7. Error: long_panel works (beginning label) (@test-utils.R#171) + 8. Error: long_panel works (beginning label/character periods) (@test-utils.R#198) + 9. Error: long_panel works (prefix and suffix/character periods) (@test-utils.R#225) + 1. ... + + Error: testthat unit tests failed + Execution halted ``` -* checking R code for possible problems ... NOTE +## In both + +* checking Rd cross-references ... NOTE ``` - assign_chunk: no visible binding for global variable ‘chromosome’ - assign_chunk: no visible global function definition for ‘IRanges’ - assign_chunk: no visible binding for global variable ‘position’ - assign_chunk: no visible binding for global variable ‘seqid’ - assign_chunk: no visible binding for global variable ‘Name’ - find_pathway_significance: no visible binding for global variable - ‘gene_id’ - plot_pathways: no visible binding for global variable - ‘running_enrichment_score’ - Undefined global functions or variables: - IRanges Name chromosome gene_id position running_enrichment_score - seqid + Package unavailable to check Rd xrefs: ‘AER’ ``` # photosynthesis @@ -2119,7 +2378,7 @@ Run `revdep_details(,"PAST")` for more info * Date/Publication: 2019-05-09 15:10:03 UTC * Number of recursive dependencies: 73 -Run `revdep_details(,"photosynthesis")` for more info +Run `cloud_details(, "photosynthesis")` for more info @@ -2170,7 +2429,7 @@ Run `revdep_details(,"photosynthesis")` for more info * Date/Publication: 2020-05-15 08:47:17 UTC * Number of recursive dependencies: 106 -Run `revdep_details(,"pmdplyr")` for more info +Run `cloud_details(, "pmdplyr")` for more info @@ -2202,9 +2461,9 @@ Run `revdep_details(,"pmdplyr")` for more info Execution halted ``` -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ℹ The error occured in group 1: i = 1. @@ -2220,7 +2479,7 @@ Run `revdep_details(,"pmdplyr")` for more info 21. dplyr:::stop_mutate_recycle_incompatible_size(e, index = i, dots = dots) 22. dplyr:::stop_dplyr(...) - Error: C stack usage 7971360 is too close to the limit + Error: C stack usage 7971332 is too close to the limit Execution halted ``` @@ -2232,6 +2491,101 @@ Run `revdep_details(,"pmdplyr")` for more info See section 'Cross-references' in the 'Writing R Extensions' manual. ``` +# ptstem + +
+ +* Version: 0.0.7 +* Source code: https://github.com/cran/ptstem +* URL: https://github.com/dfalbel/ptstem +* Date/Publication: 2020-05-12 23:40:03 UTC +* Number of recursive dependencies: 63 + +Run `cloud_details(, "ptstem")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + y[4]: "gostou" + + x[5]: "gostaram" + y[5]: "gostou" + + x[6]: "gostaram" + y[6]: "gostou" + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 17 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ] + 1. Failure: Stemming Hunspell Works (@test-ptstem.R#15) + 2. Failure: Stemming Hunspell Works (@test-ptstem.R#19) + + Error: testthat unit tests failed + Execution halted + ``` + +## In both + +* checking installed package size ... NOTE + ``` + installed size is 5.3Mb + sub-directories of 1Mb or more: + dict 5.1Mb + ``` + +# purrrogress + +
+ +* Version: 0.1.1 +* Source code: https://github.com/cran/purrrogress +* URL: https://github.com/halpo/purrrogress +* BugReports: https://github.com/halpo/purrrogress/issues +* Date/Publication: 2019-07-22 21:10:08 UTC +* Number of recursive dependencies: 48 + +Run `cloud_details(, "purrrogress")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + > library(purrrogress) + > + > test_check("purrrogress") + ── 1. Error: with_progress_group_map (@group_map.R#56) ──────────────────────── + object '.tbl' not found + Backtrace: + 1. dplyr::group_map(...) + 13. dplyr::count(.tbl) + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 224 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] + 1. Error: with_progress_group_map (@group_map.R#56) + + Error: testthat unit tests failed + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘R6’ ‘hms’ + All declared Imports should be used. + ``` + # rabhit
@@ -2243,7 +2597,7 @@ Run `revdep_details(,"pmdplyr")` for more info * Date/Publication: 2020-01-29 20:20:02 UTC * Number of recursive dependencies: 109 -Run `revdep_details(,"rabhit")` for more info +Run `cloud_details(, "rabhit")` for more info
@@ -2275,102 +2629,84 @@ Run `revdep_details(,"rabhit")` for more info Execution halted ``` -# Rariant +# radiant.data
-* Version: 1.24.0 -* Source code: https://github.com/cran/Rariant -* URL: https://github.com/juliangehring/Rariant -* BugReports: https://support.bioconductor.org -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 167 +* Version: 1.3.4 +* Source code: https://github.com/cran/radiant.data +* URL: https://github.com/radiant-rstats/radiant.data, https://radiant-rstats.github.io/radiant.data, https://radiant-rstats.github.io/docs +* BugReports: https://github.com/radiant-rstats/radiant.data/issues +* Date/Publication: 2020-03-23 15:50:05 UTC +* Number of recursive dependencies: 144 -Run `revdep_details(,"Rariant")` for more info +Run `cloud_details(, "radiant.data")` for more info
## Newly broken -* checking whether package ‘Rariant’ can be installed ... ERROR +* checking tests ... ERROR ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Rariant/new/Rariant.Rcheck/00install.out’ for details. + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + ── 1. Failure: transform ts (@test_funs.R#166) ──────────────────────────────── + dat$mpg not equal to ts(mtcars$mpg, start = c(1971, 1), frequency = 52). + Classes differ: numeric is not ts + + ── 2. Failure: transform ts (@test_funs.R#167) ──────────────────────────────── + dat$cyl not equal to ts(mtcars$cyl, start = c(1971, 1), frequency = 52). + Classes differ: numeric is not ts + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 32 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 2 ] + 1. Failure: transform ts (@test_funs.R#166) + 2. Failure: transform ts (@test_funs.R#167) + + Error: testthat unit tests failed + Execution halted ``` -## Newly fixed +# rainette -* checking examples ... WARNING - ``` - Found the following significant warnings: - - Warning: 'rbind_all' is deprecated. - Deprecated functions may be defunct as soon as of the next release of - R. - See ?Deprecated. - ``` +
-* checking installed package size ... NOTE - ``` - installed size is 7.7Mb - sub-directories of 1Mb or more: - doc 2.2Mb - extdata 5.2Mb - ``` +* Version: 0.1.1 +* Source code: https://github.com/cran/rainette +* URL: https://juba.github.io/rainette/ +* BugReports: https://github.com/juba/rainette/issues +* Date/Publication: 2020-05-09 12:00:03 UTC +* Number of recursive dependencies: 155 + +Run `cloud_details(, "rainette")` for more info -* checking R code for possible problems ... NOTE +
+ +## Newly broken + +* checking tests ... ERROR ``` - tallyBamRegion: no visible global function definition for 'PileupParam' - tallyBamRegion: no visible global function definition for - 'ScanBamParam' - tallyBamRegion: no visible global function definition for 'pileup' - Undefined global functions or variables: - PileupParam ScanBamParam pileup + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + 3. rainette:::filter_crosstab(...) + 3. dplyr::filter(., chi2 > min_chi2, n_both > min_members) + 3. dplyr::select(., g1, g2, level1, level2, n_both, chi2) + 10. dplyr::mutate(...) + 13. dplyr:::mutate_cols(.data, ...) + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 106 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 2 ] + 1. Error: rainette2_complete_groups (@test_cutree.R#28) + 2. Error: (unknown) (@test_rainette2.R#12) + + Error: testthat unit tests failed + In addition: Warning message: + In for (elt in name) { : closing unused connection 4 (doesnt/exist.txtt) + Execution halted ``` -* checking installed files from ‘inst/doc’ ... NOTE - ``` - The following files should probably not be installed: - ‘rariant-inspect-ci.png’, ‘rariant-inspect-shift.png’ - - Consider the use of a .Rinstignore file: see ‘Writing R Extensions’, - or move the vignette sources from ‘inst/doc’ to ‘vignettes’. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Rariant’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -Error: object 'rbind_all' is not exported by 'namespace:dplyr' -Execution halted -ERROR: lazy loading failed for package ‘Rariant’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/Rariant/new/Rariant.Rcheck/Rariant’ - -``` -### CRAN - -``` -* installing *source* package ‘Rariant’ ... -** using staged installation -** R -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (Rariant) - -``` # ratPASTA
@@ -2382,15 +2718,15 @@ ERROR: lazy loading failed for package ‘Rariant’ * Date/Publication: 2020-04-28 11:40:02 UTC * Number of recursive dependencies: 118 -Run `revdep_details(,"ratPASTA")` for more info +Run `cloud_details(, "ratPASTA")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Attributes: < Length mismatch: comparison on first 2 components > @@ -2427,15 +2763,15 @@ Run `revdep_details(,"ratPASTA")` for more info * Date/Publication: 2016-07-30 18:53:27 * Number of recursive dependencies: 61 -Run `revdep_details(,"RCMIP5")` for more info +Run `cloud_details(, "RCMIP5")` for more info ## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Component 4: target is logical, current is numeric @@ -2455,6 +2791,96 @@ Run `revdep_details(,"RCMIP5")` for more info Execution halted ``` +# rcv + +
+ +* Version: 0.2.1 +* Source code: https://github.com/cran/rcv +* URL: https://github.com/ds-elections/rcv +* BugReports: https://github.com/ds-elections/rcv/issues +* Date/Publication: 2017-08-11 08:11:33 UTC +* Number of recursive dependencies: 46 + +Run `cloud_details(, "rcv")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + Error: Problem with `summarise()` input `total`. + ✖ could not find function "n" + ℹ Input `total` is `n()`. + ℹ The error occured in group 1: candidate = "BEN MATRANGA". + Backtrace: + █ + 1. └─rcv::rcv_tally(image = sf_bos_clean, rcvcontest = "Board of Supervisors, District 7") + 2. └─`%>%`(...) + 3. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) + 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 6. └─rcv:::`_fseq`(`_lhs`) + 7. └─magrittr::freduce(value, `_function_list`) + 8. └─function_list[[i]](value) + 9. ├─dplyr::summarise(., total = n()) + 10. └─dplyr:::summarise.grouped_df(., total = n()) + 11. └─dplyr:::summarise_cols(.data, ...) + + Backtrace: + █ + Execution halted + ``` + +## In both + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 6543 marked UTF-8 strings + ``` + +# RNeXML + +
+ +* Version: 2.4.4 +* Source code: https://github.com/cran/RNeXML +* URL: https://docs.ropensci.org/RNeXML, https://github.com/ropensci/RNeXML +* BugReports: https://github.com/ropensci/RNeXML/issues +* Date/Publication: 2020-05-10 07:20:06 UTC +* Number of recursive dependencies: 135 + +Run `cloud_details(, "RNeXML")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘test-all.R’ + Running the tests in ‘tests/test-all.R’ failed. + Last 13 lines of output: + Loading required package: ape + ── 1. Failure: coalesce_() works correctly (@test_01_utils.R#129) ───────────── + `dplyr::coalesce(dta$col1, dta$col3, last)` did not throw an error. + + ── 2. Failure: coalesce_() works correctly (@test_01_utils.R#130) ───────────── + `dplyr::coalesce(dta$col3, last)` did not throw an error. + + Done simulation(s). + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 300 | SKIPPED: 45 | WARNINGS: 2 | FAILED: 2 ] + 1. Failure: coalesce_() works correctly (@test_01_utils.R#129) + 2. Failure: coalesce_() works correctly (@test_01_utils.R#130) + + Error: testthat unit tests failed + Execution halted + ``` + # rsample
@@ -2466,15 +2892,15 @@ Run `revdep_details(,"RCMIP5")` for more info * Date/Publication: 2020-03-31 19:50:02 UTC * Number of recursive dependencies: 98 -Run `revdep_details(,"rsample")` for more info +Run `cloud_details(, "rsample")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Attributes: < Component 2: Numeric: lengths (40, 1) differ > @@ -2494,6 +2920,97 @@ Run `revdep_details(,"rsample")` for more info Execution halted ``` +# RTL + +
+ +* Version: 0.1.1 +* Source code: https://github.com/cran/RTL +* URL: https://github.com/risktoollib/RTL +* Date/Publication: 2020-02-23 18:50:02 UTC +* Number of recursive dependencies: 136 + +Run `cloud_details(, "RTL")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + Running examples in ‘RTL-Ex.R’ failed + The error most likely occurred in: + + > ### Name: chart_zscore + > ### Title: 'chart_zscore' + > ### Aliases: chart_zscore + > + > ### ** Examples + > + > chart_zscore(df = ng_storage, title = "NG Storage Z Score", + + per = "yearweek", output = "stl", chart = "seasons") + Warning: The `add` argument of `group_by()` is deprecated as of dplyr 1.0.0. + Please use the `.add` argument instead. + This warning is displayed once every 8 hours. + Call `lifecycle::last_warnings()` to see where this warning was generated. + Error in UseMethod("model") : + no applicable method for 'model' applied to an object of class "c('grouped_df', 'tbl_df', 'tbl', 'data.frame')" + Calls: chart_zscore ... eval -> _fseq -> freduce -> -> + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘quantmod’ + All declared Imports should be used. + ``` + +* checking data for non-ASCII characters ... NOTE + ``` + Note: found 15456 marked UTF-8 strings + ``` + +# rules + +
+ +* Version: 0.0.1 +* Source code: https://github.com/cran/rules +* URL: https://github.com/tidymodels/rules, https://rules.tidymodels.org +* Date/Publication: 2020-05-20 15:00:02 UTC +* Number of recursive dependencies: 96 + +Run `cloud_details(, "rules")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + ── 7. Error: non-formula method ─────────────────────────────────────────────── + object 'rf_m_pred' not found + + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 55 | SKIPPED: 12 | WARNINGS: 4 | FAILED: 7 ] + 1. Error: mulit-predict + 2. Failure: formula method (@test-rule-fit-binomial.R#52) + 3. Failure: formula method (@test-rule-fit-binomial.R#56) + 4. Error: formula method + 5. Failure: non-formula method (@test-rule-fit-binomial.R#131) + 6. Failure: non-formula method (@test-rule-fit-binomial.R#135) + 7. Error: non-formula method + + Error: testthat unit tests failed + Execution halted + ``` + # saotd
@@ -2504,32 +3021,27 @@ Run `revdep_details(,"rsample")` for more info * Date/Publication: 2019-04-04 16:30:03 UTC * Number of recursive dependencies: 118 -Run `revdep_details(,"saotd")` for more info +Run `cloud_details(, "saotd")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - ── 5. Failure: unigrams are computed properly (@test_unigram.R#18) ──────────── - saotd::unigram(DataFrame = test_unigram_df) not equal to `correct_unigram_df`. + Complete output: + > library(testthat) + > library(saotd) + > + > test_check("saotd") + ── 1. Failure: bigrams are computed properly (@test_bigram.R#19) ────────────── + saotd::bigram(DataFrame = test_bigram_df) not equal to `correct_bigram_df`. Attributes: < Component "class": Lengths (1, 3) differ (string compare on first 1) > Attributes: < Component "class": 1 string mismatch > - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 63 | SKIPPED: 0 | WARNINGS: 7 | FAILED: 5 ] - 1. Failure: bigrams are computed properly (@test_bigram.R#19) - 2. Error: (unknown) (@test_number_topics.R#12) - 3. Failure: Trigrams are computed properly (@test_trigram.R#21) - 4. Error: (unknown) (@test_tweet_topics.R#12) - 5. Failure: unigrams are computed properly (@test_unigram.R#18) - - Error: testthat unit tests failed - Execution halted + Killed ``` ## In both @@ -2539,70 +3051,6 @@ Run `revdep_details(,"saotd")` for more info Note: found 826 marked UTF-8 strings ``` -# SCORPIUS - -
- -* Version: 1.0.6 -* Source code: https://github.com/cran/SCORPIUS -* URL: http://github.com/rcannood/SCORPIUS -* BugReports: https://github.com/rcannood/SCORPIUS/issues -* Date/Publication: 2020-03-16 16:20:02 UTC -* Number of recursive dependencies: 116 - -Run `revdep_details(,"SCORPIUS")` for more info - -
- -## Newly broken - -* checking whether package ‘SCORPIUS’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCORPIUS/new/SCORPIUS.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘SCORPIUS’ ... -** package ‘SCORPIUS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error: object ‘as.tbl_cube’ is not exported by 'namespace:dplyr' -Execution halted -ERROR: lazy loading failed for package ‘SCORPIUS’ -* removing ‘/Users/romainfrancois/git/revdep/dplyr/revdep/checks.noindex/SCORPIUS/new/SCORPIUS.Rcheck/SCORPIUS’ - -``` -### CRAN - -``` -* installing *source* package ‘SCORPIUS’ ... -** package ‘SCORPIUS’ successfully unpacked and MD5 sums checked -** using staged installation -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -*** copying figures -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (SCORPIUS) - -``` # sergeant
@@ -2614,7 +3062,7 @@ ERROR: lazy loading failed for package ‘SCORPIUS’ * Date/Publication: 2017-07-17 22:36:26 UTC * Number of recursive dependencies: 63 -Run `revdep_details(,"sergeant")` for more info +Run `cloud_details(, "sergeant")` for more info
@@ -2631,18 +3079,18 @@ Run `revdep_details(,"sergeant")` for more info Extensions’ manual. ``` -# sevenbridges +# sf
-* Version: 1.18.0 -* Source code: https://github.com/cran/sevenbridges -* URL: https://www.sevenbridges.com, https://sbg.github.io/sevenbridges-r/, https://github.com/sbg/sevenbridges-r -* BugReports: https://github.com/sbg/sevenbridges-r/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 63 +* Version: 0.9-3 +* Source code: https://github.com/cran/sf +* URL: https://r-spatial.github.io/sf/, https://github.com/r-spatial/sf/ +* BugReports: https://github.com/r-spatial/sf/issues/ +* Date/Publication: 2020-05-04 17:40:02 UTC +* Number of recursive dependencies: 145 -Run `revdep_details(,"sevenbridges")` for more info +Run `cloud_details(, "sf")` for more info
@@ -2651,37 +3099,64 @@ Run `revdep_details(,"sevenbridges")` for more info * checking examples ... ERROR ``` ... - > - > f1 <- system.file("extdata/app", "flow_star.json", package = "sevenbridges") - > f1 <- convert_app(f1) - > # input matrix - > f1$input_matrix() - Error: Can't combine `..1$category` and `..4$category` . - Backtrace: - █ - 1. ├─f1$input_matrix() - 2. │ ├─base::suppressWarnings(as(inputs, "data.frame")) - 3. │ │ └─base::withCallingHandlers(...) - 4. │ └─methods::as(inputs, "data.frame") - 5. │ └─sevenbridges:::asMethod(object) - 6. │ ├─base::do.call("bind_rows", lst) - 7. │ └─dplyr::bind_rows(...) - 8. │ └─vctrs::vec_rbind(!!!dots, .names_to = .id) - 9. └─vctrs::vec_default_ptype2(...) - 10. └─vctrs::stop_incompatible_type(...) - 11. └─vctrs:::stop_incompatible(...) - 12. └─vctrs:::stop_vctrs(...) - Execution halted + geometry type: POINT + dimension: XY + bbox: xmin: 0 ymin: 1 xmax: 0 ymax: 1 + CRS: EPSG:3857 + a a.1 a.2 geom geom.1 geom.2 + 1 1 1 4 POINT (0 1) LINESTRING (1 3, 2 4) MULTILINESTRING ((1 3, 2 4)) + > if (require(dplyr)) + + dplyr::bind_cols(a,b) + Loading required package: dplyr + + Attaching package: ‘dplyr’ + + The following objects are masked from ‘package:stats’: + + filter, lag + + The following objects are masked from ‘package:base’: + + intersect, setdiff, setequal, union + + New names: + ``` + +* checking tests ... ERROR + ``` + ... + < CRS: GEOGCS["NAD27",DATUM["North_American_Datum_1927",SPHEROID["Clarke 1866",6378206.4,294.9786982138982,AUTHORITY["EPSG","7008"]],AUTHORITY["EPSG","6267"]],PRIMEM["Greenwich",0],UNIT["degree",0.0174532925199433],AUTHORITY["EPSG","4267"]] + --- + > geographic CRS: NAD27 + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + 7. vctrs:::stop_incompatible(...) + 8. vctrs:::stop_vctrs(...) + + Failed to create feature 1 in x + Failed to create feature 1 in x + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 702 | SKIPPED: 55 | WARNINGS: 6 | FAILED: 5 ] + 1. Failure: filter to sfc works (@test_tidy.R#17) + 2. Failure: filter to sfc works (@test_tidy.R#19) + 3. Failure: `precision` and `crs` attributes of `sfc` vectors are combined (@test_vctrs.R#48) + 4. Failure: `precision` and `crs` attributes of `sfc` vectors are combined (@test_vctrs.R#51) + 5. Error: `sfc` vectors have a common type (@test_vctrs.R#59) + + Error: testthat unit tests failed + Execution halted ``` ## In both * checking installed package size ... NOTE ``` - installed size is 12.3Mb + installed size is 26.7Mb sub-directories of 1Mb or more: - R 2.0Mb - doc 9.5Mb + doc 11.9Mb + libs 10.3Mb + sqlite 1.5Mb ``` # simglm @@ -2693,15 +3168,15 @@ Run `revdep_details(,"sevenbridges")` for more info * Date/Publication: 2019-05-31 17:10:03 UTC * Number of recursive dependencies: 90 -Run `revdep_details(,"simglm")` for more info +Run `cloud_details(, "simglm")` for more info ## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── 1. Failure: interupt TS (@test_knots.r#69) ───────────────────────────────── @@ -2713,7 +3188,7 @@ Run `revdep_details(,"simglm")` for more info Numeric: lengths (2, 0) differ ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 129 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 2 ] + [ OK: 129 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 2 ] 1. Failure: interupt TS (@test_knots.r#69) 2. Failure: interupt TS (@test_knots.r#96) @@ -2721,6 +3196,58 @@ Run `revdep_details(,"simglm")` for more info Execution halted ``` +# simplevis + +
+ +* Version: 1.1.3 +* Source code: https://github.com/cran/simplevis +* URL: https://statisticsnz.github.io/simplevis, https://github.com/statisticsnz/simplevis +* BugReports: https://github.com/statisticsNZ/simplevis/issues +* Date/Publication: 2020-05-14 19:30:02 UTC +* Number of recursive dependencies: 118 + +Run `cloud_details(, "simplevis")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + 2 02 Auckland Region (((175.44 -36.26242, 175.4375 -36.25857, 175.4… + 3 03 Waikato Region (((174.7847 -38.13349, 174.7865 -38.13396, 174… + 4 04 Bay of Plenty Re… (((176.1715 -37.68738, 176.1707 -37.68717, 176… + 5 05 Gisborne Region (((177.876 -38.0767, 177.9723 -37.84501, 178.0… + 6 06 Hawke's Bay Regi… (((177.9018 -39.07296, 177.908 -39.07566, 177.… + 7 07 Taranaki Region (((174.2067 -39.59022, 174.2015 -39.58808, 174… + 8 08 Manawatu-Wanganu… (((175.5606 -38.49023, 175.5655 -38.49453, 175… + 9 09 Wellington Region (((174.8099 -41.34305, 174.8109 -41.34476, 174… + 10 12 West Coast Region (((170.3303 -43.09979, 170.3268 -43.10285, 170… + 11 13 Canterbury Region (((172.6917 -42.10662, 172.7017 -42.1013, 172.… + 12 14 Otago Region (((169.7051 -46.47425, 169.7035 -46.47368, 169… + 13 15 Southland Region (((167.7202 -47.04975, 167.7135 -47.04868, 167… + 14 16 Tasman Region (((172.4941 -41.04557, 172.4961 -41.04071, 172… + 15 17 Nelson Region (((173.3167 -41.24106, 173.3154 -41.23618, 173… + 16 18 Marlborough Regi… (((173.3044 -41.507, 173.2889 -41.49327, 173.2… + > + > ggplot_sf(nz_region) + Error in UseMethod("st_agr<-") : + no applicable method for 'st_agr<-' applied to an object of class "c('grouped_df', 'tbl_df', 'tbl', 'data.frame')" + Calls: ggplot_sf ... fortify.grouped_df -> $<- -> $<-.sf -> [[<- -> [[<-.sf -> st_agr<- + Execution halted + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespaces in Imports field not imported from: + ‘DT’ ‘readr’ ‘rmarkdown’ ‘shinycssloaders’ + All declared Imports should be used. + ``` + # SIRItoGTFS
@@ -2732,7 +3259,7 @@ Run `revdep_details(,"simglm")` for more info * Date/Publication: 2018-05-21 18:36:10 UTC * Number of recursive dependencies: 32 -Run `revdep_details(,"SIRItoGTFS")` for more info +Run `cloud_details(, "SIRItoGTFS")` for more info
@@ -2764,6 +3291,49 @@ Run `revdep_details(,"SIRItoGTFS")` for more info Execution halted ``` +# sistec + +
+ +* Version: 0.0.2 +* Source code: https://github.com/cran/sistec +* URL: https://github.com/r-ifpe/sistec +* BugReports: https://github.com/r-ifpe/sistec/issues +* Date/Publication: 2020-05-11 12:50:03 UTC +* Number of recursive dependencies: 50 + +Run `cloud_details(, "sistec")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + + package = "sistec")) + > + > compare_sistec(sistec, qacademico) + Error: Input must be a vector, not a `data.frame/sistec_data_frame` object. + Backtrace: + █ + 1. ├─sistec::compare_sistec(sistec, qacademico) + 2. ├─sistec:::compare_sistec.qacademico_data_frame(sistec, qacademico) + 3. │ └─sistec:::compare_sistec_qacademico(sistec, student_registration) + 4. │ └─sistec:::filter_cpf_sistec(sistec) + 5. │ ├─dplyr::filter(x, !!sym("NU_CPF") == "") + 6. │ └─dplyr:::filter.data.frame(x, !!sym("NU_CPF") == "") + 7. │ ├─dplyr::dplyr_row_slice(.data, loc, preserve = .preserve) + 8. │ └─dplyr:::dplyr_row_slice.data.frame(.data, loc, preserve = .preserve) + 9. │ ├─dplyr::dplyr_reconstruct(vec_slice(data, i), data) + 10. │ │ └─dplyr:::dplyr_new_data_frame(data) + 11. │ │ ├─row.names %||% .row_names_info(x, type = 0L) + 12. │ │ └─base::.row_names_info(x, type = 0L) + 13. │ └─vctrs::vec_slice(data, i) + 14. └─vctrs:: + Execution halted + ``` + # skynet
@@ -2775,15 +3345,15 @@ Run `revdep_details(,"SIRItoGTFS")` for more info * Date/Publication: 2018-12-12 10:20:03 UTC * Number of recursive dependencies: 84 -Run `revdep_details(,"skynet")` for more info +Run `cloud_details(, "skynet")` for more info
## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: > library(testthat) @@ -2821,18 +3391,18 @@ Run `revdep_details(,"skynet")` for more info * Date/Publication: 2019-09-20 04:50:02 UTC * Number of recursive dependencies: 64 -Run `revdep_details(,"strapgod")` for more info +Run `cloud_details(, "strapgod")` for more info ## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: - Component 4: Mean relative difference: 0.6802195 + Component 4: Mean relative difference: 0.6797548 Component 5: Attributes: < target is NULL, current is list > Component 5: target is numeric, current is factor @@ -2858,7 +3428,7 @@ Run `revdep_details(,"strapgod")` for more info * Date/Publication: 2020-03-20 13:50:06 UTC * Number of recursive dependencies: 124 -Run `revdep_details(,"StratigrapheR")` for more info +Run `cloud_details(, "StratigrapheR")` for more info @@ -2890,6 +3460,56 @@ Run `revdep_details(,"StratigrapheR")` for more info Execution halted ``` +# sugarbag + +
+ +* Version: 0.1.2 +* Source code: https://github.com/cran/sugarbag +* URL: https://srkobakian.github.io/sugarbag/, https://github.com/srkobakian/sugarbag +* Date/Publication: 2020-01-08 20:40:02 UTC +* Number of recursive dependencies: 108 + +Run `cloud_details(, "sugarbag")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + > + > + > data(tas_sa2) + > data(capital_cities) + > hexmap <- create_hexmap( + + shp = tas_lga, + + sf_id = "LGA_CODE16", + + focal_points = capital_cities, verbose = TRUE + + ) + Warning in st_centroid.sf(., of_largest_polygon = largest) : + st_centroid assumes attributes are constant over geometries of x + Warning in st_centroid.sfc(st_geometry(x), of_largest_polygon = of_largest_polygon) : + st_centroid does not give correct centroids for longitude/latitude data + Warning: st_crs<- : replacing crs does not reproject data; use st_transform for that + Warning: st_crs<- : replacing crs does not reproject data; use st_transform for that + Buffer set to 1.224 degrees. + Converted hexagon size to 0.1205 degrees. + Filter set to 1.2047 degrees. + Finding closest point in focal_points data set. + Closest points found. + New names: + ``` + +## In both + +* checking dependencies in R code ... NOTE + ``` + Namespace in Imports field not imported from: ‘lwgeom’ + All declared Imports should be used. + ``` + # tidyjson
@@ -2901,7 +3521,7 @@ Run `revdep_details(,"StratigrapheR")` for more info * Date/Publication: 2020-05-28 13:40:02 UTC * Number of recursive dependencies: 89 -Run `revdep_details(,"tidyjson")` for more info +Run `cloud_details(, "tidyjson")` for more info
@@ -2933,9 +3553,9 @@ Run `revdep_details(,"tidyjson")` for more info Execution halted ``` -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 16. dplyr:::mutate.data.frame(.data, ..., .keep = "none") @@ -2966,15 +3586,15 @@ Run `revdep_details(,"tidyjson")` for more info * Date/Publication: 2020-03-07 16:00:02 UTC * Number of recursive dependencies: 60 -Run `revdep_details(,"tidyRSS")` for more info +Run `cloud_details(, "tidyRSS")` for more info ## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: ── 2. Error: df is cleaned properly (@test_general.R#84) ────────────────────── @@ -3003,7 +3623,7 @@ Run `revdep_details(,"tidyRSS")` for more info * Date/Publication: 2019-09-12 07:20:02 UTC * Number of recursive dependencies: 29 -Run `revdep_details(,"tidystats")` for more info +Run `cloud_details(, "tidystats")` for more info @@ -3012,6 +3632,7 @@ Run `revdep_details(,"tidystats")` for more info * checking examples ... ERROR ``` ... + + group_by(source) %>% + describe_data(response) Error: `x` must be a vector, not a `grouped_df/tbl_df/tbl/data.frame/tidystats_descriptives` object. Backtrace: @@ -3026,12 +3647,11 @@ Run `revdep_details(,"tidystats")` for more info 8. ├─base::as.data.frame(head(x, n)) 9. ├─utils::head(x, n) 10. └─utils:::head.data.frame(x, n) - 11. ├─base::do.call("[", args) - 12. ├─x[1:2, , drop = FALSE] - 13. └─dplyr:::`[.grouped_df`(x, 1:2, , drop = FALSE) - 14. └─dplyr::grouped_df(out, groups, group_by_drop_default(x)) - 15. └─dplyr:::compute_groups(data, vars, drop = drop) - 16. + 11. ├─x[seq_len(n), , drop = FALSE] + 12. └─dplyr:::`[.grouped_df`(x, seq_len(n), , drop = FALSE) + 13. └─dplyr::grouped_df(out, groups, group_by_drop_default(x)) + 14. └─dplyr:::compute_groups(data, vars, drop = drop) + 15. ├─tibble::as_tib Execution halted ``` @@ -3057,7 +3677,7 @@ Run `revdep_details(,"tidystats")` for more info * Date/Publication: 2019-02-12 17:20:02 UTC * Number of recursive dependencies: 36 -Run `revdep_details(,"tidystopwords")` for more info +Run `cloud_details(, "tidystopwords")` for more info @@ -3096,17 +3716,18 @@ Run `revdep_details(,"tidystopwords")` for more info Note: found 229801 marked UTF-8 strings ``` -# timeOmics +# timetk
* Version: 1.0.0 -* Source code: https://github.com/cran/timeOmics -* BugReports: https://github.com/abodein/timeOmics/issues -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 121 +* Source code: https://github.com/cran/timetk +* URL: https://github.com/business-science/timetk +* BugReports: https://github.com/business-science/timetk/issues +* Date/Publication: 2020-04-19 17:50:02 UTC +* Number of recursive dependencies: 151 -Run `revdep_details(,"timeOmics")` for more info +Run `cloud_details(, "timetk")` for more info
@@ -3115,191 +3736,41 @@ Run `revdep_details(,"timeOmics")` for more info * checking examples ... ERROR ``` ... - > block.pls.cluster <- getCluster(demo$block.pls) - Error: Join columns must be unique. - ✖ Problem at position 2. + Error: Problem with `mutate()` input `nested.col`. + ✖ Can't recycle `..1` (size 169) to match `..2` (size 0). + ℹ Input `nested.col` is `purrr::map(...)`. + ℹ The error occured in group 1: id = "H10". Backtrace: █ - 1. ├─timeOmics::getCluster(demo$block.pls) - 2. └─timeOmics:::getCluster.block.pls(demo$block.pls) - 3. └─`%>%`(...) - 4. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) - 5. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 6. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) - 7. └─timeOmics:::`_fseq`(`_lhs`) - 8. └─magrittr::freduce(value, `_function_list`) - 9. └─function_list[[i]](value) - 10. ├─dplyr::left_join(., block.info, by = c("molecule", "molecule")) - 11. └─dplyr:::left_join.data.frame(...) - 12. └─dplyr:::join_mutate(...) - 13. └─dplyr:::join_cols(...) - 14. └─dplyr:::standardise_join_by(by, x_names = x_names, y_names = y_names) - 15. └─dplyr:::check_join_vars(by$x, x_names) - Execution halted - ``` - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 174 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 17 ] - 1. Error: getCluster works and return a valid output (@test-getCluster.R#19) - 2. Error: getNcomp works (@test-getNcomp.R#57) - 3. Error: getNcomp plot works (@test-getNcomp.R#69) - 4. Error: getSilhouette works (@test-getSilhouette.R#20) - 5. Error: lmms.filter.lines works (@test-lmms.filter.lines.R#57) - 6. Failure: plotLong failed on invalid - time (@test-plotLong.R#41) - 7. Failure: plotLong failed on invalid - time (@test-plotLong.R#42) - 8. Failure: plotLong failed on invalid - time (@test-plotLong.R#43) - 9. Failure: plotLong failed on invalid - time (@test-plotLong.R#44) - 1. ... - - Error: testthat unit tests failed - Execution halted - ``` - -## In both - -* checking for hidden files and directories ... NOTE - ``` - Found the following hidden files and directories: - .travis.yml - These were most likely included in error. See section ‘Package - structure’ in the ‘Writing R Extensions’ manual. - ``` - -* checking dependencies in R code ... NOTE - ``` - Package in Depends field not imported from: ‘lmms’ - These packages need to be imported from (in the NAMESPACE file) - for when this namespace is loaded but not attached. - ``` - -* checking R code for possible problems ... NOTE - ``` - ... - tune.silhouette.get_slopes: no visible binding for global variable - ‘Z_score.neg’ - tuneCluster.block.spls: no visible binding for global variable - ‘silhouette.coef’ - tuneCluster.spca: no visible binding for global variable - ‘silhouette.coef’ - tuneCluster.spls: no visible binding for global variable - ‘silhouette.coef’ - unscale: no visible global function definition for ‘is’ - Undefined global functions or variables: - . BP.test MSE Pval.dir Pval.neg Pval.pos Pval.value Pvalue X Y_hat - Y_i Z_score.neg Z_score.pos block cluster cluster1 cluster2 comp - contrib contrib.max cor destination direction distance_from_origin - error feature feature1 feature2 insideout is median molecule na.omit - ncomp origin pnorm sd silhouette.coef slope.neg slope.pos slot val - value - Consider adding - importFrom("methods", "is", "slot") - importFrom("stats", "cor", "median", "na.omit", "pnorm", "sd") - to your NAMESPACE file (and ensure that your DESCRIPTION Imports field - contains 'methods'). - ``` - -# TPP - -
- -* Version: 3.16.0 -* Source code: https://github.com/cran/TPP -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 95 - -Run `revdep_details(,"TPP")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - ... - Normalization successfully completed! - - Warning: `as.tbl()` is deprecated as of dplyr 1.0.0. - Please use `tibble::as_tibble()` instead. - This warning is displayed once every 8 hours. - Call `lifecycle::last_warnings()` to see where this warning was generated. - Fitting smoothing splines and AICc values for the following degrees of freedom: 3, 4, 5, 6, 7 - Fitting null models to 510 proteins (using 3 degrees of freedom) - Fitting alternative models to 510 proteins (using 3 degrees of freedom) - Fitting null models to 510 proteins (using 4 degrees of freedom) - Fitting alternative models to 510 proteins (using 4 degrees of freedom) - Fitting null models to 510 proteins (using 5 degrees of freedom) - Fitting alternative models to 510 proteins (using 5 degrees of freedom) - Fitting null models to 510 proteins (using 6 degrees of freedom) - Fitting alternative models to 510 proteins (using 6 degrees of freedom) - Fitting null models to 510 proteins (using 7 degrees of freedom) - Fitting alternative models to 510 proteins (using 7 degrees of freedom) - Error in { : - task 1 failed - "Can't recycle input of size 510 to size 1020." - Calls: analyzeTPPTR ... tpptrSplineFitAndTest -> tpptrFitSplines -> %dopar% -> + 1. └─`%>%`(...) + 2. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) + 3. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 5. └─`_fseq`(`_lhs`) + 6. └─magrittr::freduce(value, `_function_list`) + 7. ├─base::withVisible(function_list[[k]](value)) + 8. └─function_list[[k]](value) + 9. ├─timetk::plot_acf_diagnostics(...) + 10. └─timetk:::plot_acf_diagnostics.grouped_df(...) + 11. ├─timetk::tk_acf_diagnostics(...) + 12. └─timetk:::tk_acf_diagnostics.grouped_df(...) + 13. └─`%>%`(...) + 14. ├─base::withVisible(eval(quote(`_fseq`(`_ Execution halted ``` -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 167 | SKIPPED: 1 | WARNINGS: 255 | FAILED: 26 ] - 1. Error: NPARC_allok (@test_analyzeTPPTR.R#14) - 2. Error: NPARC_allok_output (@test_analyzeTPPTR.R#34) - 3. Error: NPARC_allok_plot (@test_analyzeTPPTR.R#61) - 4. Error: NPARC_allok_files (@test_analyzeTPPTR.R#94) - 5. Error: (unknown) (@test_compute_spline_auc.R#12) - 6. Error: (unknown) (@test_create_spline_plots.R#12) - 7. Error: (unknown) (@test_evalSplineModel.R#12) - 8. Error: (unknown) (@test_extract_fit_factors.R#12) - 9. Error: (unknown) (@test_invoke_spline_prediction.R#11) - 1. ... - - Error: testthat unit tests failed - Execution halted - ``` - ## In both * checking installed package size ... NOTE ``` - installed size is 13.5Mb + installed size is 6.5Mb sub-directories of 1Mb or more: - data 1.9Mb - example_data 8.0Mb - test_data 1.9Mb + doc 5.1Mb ``` -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘broom’ - All declared Imports should be used. - Unexported objects imported by ':::' calls: - ‘doParallel:::.options’ ‘mefa:::rep.data.frame’ - See the note in ?`:::` about the use of this operator. - ``` - -* checking R code for possible problems ... NOTE +* checking data for non-ASCII characters ... NOTE ``` - File ‘TPP/R/TPP.R’: - .onLoad calls: - packageStartupMessage(msgText, "\n") - - See section ‘Good practice’ in '?.onAttach'. - - plot_fSta_distribution: no visible binding for global variable - ‘..density..’ - plot_pVal_distribution: no visible binding for global variable - ‘..density..’ - Undefined global functions or variables: - ..density.. + Note: found 2750 marked UTF-8 strings ``` # tree.bins @@ -3311,15 +3782,15 @@ Run `revdep_details(,"TPP")` for more info * Date/Publication: 2018-06-14 05:33:53 UTC * Number of recursive dependencies: 69 -Run `revdep_details(,"tree.bins")` for more info +Run `cloud_details(, "tree.bins")` for more info ## Newly broken -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Items of 'old' not found in column names: [Categories]. Consider skip_absent=TRUE. @@ -3357,7 +3828,7 @@ Run `revdep_details(,"tree.bins")` for more info * Date/Publication: 2019-07-25 22:50:02 UTC * Number of recursive dependencies: 52 -Run `revdep_details(,"treeplyr")` for more info +Run `cloud_details(, "treeplyr")` for more info @@ -3389,6 +3860,79 @@ Run `revdep_details(,"treeplyr")` for more info Execution halted ``` +# tsibble + +
+ +* Version: 0.8.6 +* Source code: https://github.com/cran/tsibble +* URL: https://tsibble.tidyverts.org +* BugReports: https://github.com/tidyverts/tsibble/issues +* Date/Publication: 2020-01-31 06:20:11 UTC +* Number of recursive dependencies: 93 + +Run `cloud_details(, "tsibble")` for more info + +
+ +## Newly broken + +* checking examples ... ERROR + ``` + ... + + group_by_key() %>% + + fill_gaps(kilo = sum(kilo)) + Error: `vars` must be a character vector. + Backtrace: + █ + 1. └─harvest %>% group_by_key() %>% fill_gaps(kilo = sum(kilo)) + 2. ├─base::withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) + 3. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 4. └─base::eval(quote(`_fseq`(`_lhs`)), env, env) + 5. └─`_fseq`(`_lhs`) + 6. └─magrittr::freduce(value, `_function_list`) + 7. ├─base::withVisible(function_list[[k]](value)) + 8. └─function_list[[k]](value) + 9. ├─tsibble::fill_gaps(., kilo = sum(kilo)) + 10. └─tsibble:::fill_gaps.tbl_ts(., kilo = sum(kilo)) + 11. ├─dplyr::left_join(gap_data, replaced_df, by = by_name) + 12. └─tsibble:::left_join.tbl_ts(gap_data, replaced_df, by = by_name) + 13. └─tsibble:::update_meta(...) + 14. └─tsibble:::retain_tsibble(new, key = key(old), index = index(old)) + 15. + Execution halted + ``` + +* checking tests ... ERROR + ``` + Running ‘spelling.R’ + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 545 | SKIPPED: 2 | WARNINGS: 4 | FAILED: 35 ] + 1. Failure: 4 day interval (@test-append.R#27) + 2. Error: (unknown) (@test-append.R#31) + 3. Error: (unknown) (@test-bind.R#11) + 4. Error: (unknown) (@test-dplyr.R#5) + 5. Error: (unknown) (@test-empty.R#32) + 6. Error: (unknown) (@test-gaps.R#93) + 7. Error: (unknown) (@test-groups.R#3) + 8. Error: From Date to year-week, year-month, year-quarter and year (@test-indexby.R#84) + 9. Failure: index_by() with group_by() (@test-indexby.R#106) + 1. ... + + Error: testthat unit tests failed + Execution halted + ``` + +## In both + +* checking Rd cross-references ... NOTE + ``` + Packages unavailable to check Rd xrefs: ‘dtplyr’, ‘dbplyr’ + ``` + # vcfR
@@ -3399,7 +3943,7 @@ Run `revdep_details(,"treeplyr")` for more info * Date/Publication: 2020-02-06 09:50:02 UTC * Number of recursive dependencies: 111 -Run `revdep_details(,"vcfR")` for more info +Run `cloud_details(, "vcfR")` for more info
@@ -3431,9 +3975,9 @@ Run `revdep_details(,"vcfR")` for more info Execution halted ``` -* checking tests ... +* checking tests ... ERROR ``` - ERROR + Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: Backtrace: @@ -3453,6 +3997,54 @@ Run `revdep_details(,"vcfR")` for more info Execution halted ``` +## In both + +* checking installed package size ... NOTE + ``` + installed size is 10.3Mb + sub-directories of 1Mb or more: + libs 8.4Mb + ``` + +# vctrs + +
+ +* Version: 0.3.0 +* Source code: https://github.com/cran/vctrs +* URL: https://vctrs.r-lib.org/ +* BugReports: https://github.com/r-lib/vctrs/issues +* Date/Publication: 2020-05-11 23:20:02 UTC +* Number of recursive dependencies: 68 + +Run `cloud_details(, "vctrs")` for more info + +
+ +## Newly broken + +* checking tests ... ERROR + ``` + Running ‘testthat.R’ + Running the tests in ‘tests/testthat.R’ failed. + Last 13 lines of output: + ══ testthat results ═══════════════════════════════════════════════════════════ + [ OK: 3578 | SKIPPED: 27 | WARNINGS: 0 | FAILED: 12 ] + 1. Error: grouped-df is proxied and restored (@test-type-dplyr.R#7) + 2. Error: can take the common type of grouped tibbles and tibbles (@test-type-dplyr.R#22) + 3. Error: the common type of grouped tibbles includes the union of grouping variables (@test-type-dplyr.R#36) + 4. Error: can cast to and from `grouped_df` (@test-type-dplyr.R#45) + 5. Error: casting to `grouped_df` doesn't require grouping variables (@test-type-dplyr.R#75) + 6. Error: casting to `grouped_df` handles `drop` (@test-type-dplyr.R#82) + 7. Error: can cbind grouped data frames (@test-type-dplyr.R#87) + 8. Error: rowwise can be proxied and restored (@test-type-dplyr.R#107) + 9. Error: can take the common type of rowwise tibbles and tibbles (@test-type-dplyr.R#116) + 1. ... + + Error: testthat unit tests failed + Execution halted + ``` + # vpc
@@ -3463,7 +4055,7 @@ Run `revdep_details(,"vcfR")` for more info * Date/Publication: 2020-05-07 15:10:02 UTC * Number of recursive dependencies: 70 -Run `revdep_details(,"vpc")` for more info +Run `cloud_details(, "vpc")` for more info
@@ -3495,9 +4087,13 @@ Run `revdep_details(,"vpc")` for more info New names: ``` -* checking tests ... +* checking tests ... ERROR ``` - ERROR + ... + Running ‘test-softwaretype.R’ + Running ‘test-strat-col-detection.R’ + Running ‘test-vpc.R’ + Running ‘test-vpc_cat.R’ Running the tests in ‘tests/test-vpc_cat.R’ failed. Last 13 lines of output: * `fact_perc(dv, lev[i])` -> `fact_perc(dv, lev[i])...3` @@ -3505,14 +4101,14 @@ Run `revdep_details(,"vpc")` for more info * bin -> bin...5 * ... New names: - * strat -> strat...1 - * bin -> bin...2 - * strat -> strat...4 - * bin -> bin...5 - * strat -> strat...7 + * NA -> ...1 + * NA -> ...2 + * NA -> ...3 + * NA -> ...4 + * NA -> ...5 * ... Error in names(x) <- value : - 'names' attribute [6] must be the same length as the vector [4] + 'names' attribute [6] must be the same length as the vector [0] Calls: vpc_cat -> colnames<- Execution halted ``` @@ -3526,7 +4122,7 @@ Run `revdep_details(,"vpc")` for more info * Date/Publication: 2020-05-18 17:50:02 UTC * Number of recursive dependencies: 70 -Run `revdep_details(,"yamlet")` for more info +Run `cloud_details(, "yamlet")` for more info