gwasrapidd 0.99.17

Fixed issue #45
Fixed documentation of traits()

gwasrapidd 0.99.16

Fixed issue #46

gwasrapidd 0.99.15

Fixed issue #41
Update http mocks

gwasrapidd 0.99.14

Merged pull request #37.

gwasrapidd 0.99.13

Update pkgdown documentation to use template bootstrap 5.
Regenerated precompiled vignettes.

gwasrapidd 0.99.11

Fixed issues #8, #14, #16 and #17.
Added identifier mapping functions: study_to_association(), study_to_variant(), study_to_trait(), association_to_study(), association_to_variant(), association_to_trait(), variant_to_study(), variant_to_association(), variant_to_trait(), trait_to_study(), trait_to_association(), and trait_to_variant().

gwasrapidd 0.99.10

Fixed issue #13.

gwasrapidd 0.99.9

gwasrapidd depends now on tidyr (> 0.8.99).

gwasrapidd 0.99.8

genomic_contexts of object variants includes now the column is_mapped_gene.

gwasrapidd 0.99.7

Addressing remaining warnings in Windows build, namely those related to broken doc links: Bioconductor/Contributions#1124 (comment)

gwasrapidd 0.99.6

Addressing issue: Bioconductor/Contributions#1124 (comment)

gwasrapidd 0.99.5

Just a version bump to troubleshoot bioc build on Windows: Bioconductor/Contributions#1124 (comment).

gwasrapidd 0.99.4

Added function open_in_gwas_catalog().

gwasrapidd 0.0.1

Updated gwasrapidd packaging to comply with Bioconductor guidelines (BiocCheck::BiocCheck()).

gwasrapidd 0.0.0.9015

Fixed typo in cheatsheet.

gwasrapidd 0.0.0.9014

get_variants() can now use the cytogenetic_band criterion.

gwasrapidd 0.0.0.9013

Added the dataset cytogenetic_bands.

gwasrapidd 0.0.0.9012

Updated README installation command to use the new remotes package.
Devel version badge is now hardcoded directly instead of using a call to badger.

gwasrapidd 0.0.0.9011

get_variants() now accepts a new parameter: std_chromosomes_only. This allows to select whether variants mapped to scaffolds other than the standard chromosomes are returned. By default, now, get_variants() only returns variants mapped to chromosomes 1 thru 22, X, Y, or MT. This behaviour is now in line with results returned by the Web UI.
Fixed bug with multiple_snp_haplotype and snp_interaction. NA values in columns multiple_snp_haplotype and snp_interaction of associations tibble in associations S4 object were being mapped to character type instead of logical. This is now fixed.
Constructors for GWAS Catalog S4 objects ensure no NAs are in primary keys.
Increased test coverage.

gwasrapidd 0.0.0.9010

Changed type of column association_id in the S4 class associations from integer() to character(). This saves us from unnecessary coercions from integer to character when searching by association identifiers.
The cheatsheet is also changed to reflect this update.

gwasrapidd 0.0.0.9009

Added function exists_variant().

gwasrapidd 0.0.0.9008

Improved the Getting Started vignette.

gwasrapidd 0.0.0.9007

Added two new functions: open_in_dbsnp() and open_in_gtex().

gwasrapidd 0.0.0.9006

Added a cheatsheet.

gwasrapidd 0.0.0.9005

Improved test coverage significantly.

gwasrapidd 0.0.0.9004

Reorganized mock fixtures. Now mock file paths are all under 100 chars. No more R CMD check whining.

gwasrapidd 0.0.0.9003

Reference documentation is organized in the website.