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[BUG] Louvain demo notebook #282

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cj2001 opened this issue Feb 3, 2020 · 0 comments
Open

[BUG] Louvain demo notebook #282

cj2001 opened this issue Feb 3, 2020 · 0 comments
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bug Something isn't working

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@cj2001
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cj2001 commented Feb 3, 2020 •
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Describe the bug
I am running the code described on the Medium post. I have copied and pasted it directly into Colab. When I run the #Install RAPIDS step, I get the following:

--2020-02-03 21:27:49--  https://raw.githubusercontent.com/rapidsai/notebooks-contrib/890b04ed8687da6e3a100c81f449ff6f7b559956/utils/rapids-colab.sh
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 151.101.0.133, 151.101.64.133, 151.101.128.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|151.101.0.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 5286 (5.2K) [text/plain]
Saving to: ‘rapids-colab.sh’

rapids-colab.sh     100%[===================>]   5.16K  --.-KB/s    in 0s      

2020-02-03 21:27:49 (83.5 MB/s) - ‘rapids-colab.sh’ saved [5286/5286]

PLEASE READ
********************************************************************************************************
Colab v0.11+ Migration Notice:
 
There has been a NECESSARY Colab script code change for VERSION 0.11+ that MAY REQUIRE an update how you install RAPIDS into Colab!  
Not all Colab notebooks are updated (like personal Colabs) and while the script will install RAPIDS correctly, 
a neccessary script to update pyarrow to v0.15.x to be compatible with RAPIDS v0.11+ may not run, and your RAPIDS instance
will BREAK
 
Please enter in the box your desired RAPIDS version (ex: '0.10' or '0.11', between 0.9 to 0.11, without the quotes) and hit Enter. 
0.10
You may not have to change anything.  All versions of our script should work with this version of Colab
--2020-02-03 21:28:06--  https://github.com/rapidsai/notebooks-contrib/raw/master/utils/env-check.py
Resolving github.com (github.com)... 140.82.114.3
Connecting to github.com (github.com)|140.82.114.3|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://raw.githubusercontent.com/rapidsai/notebooks-contrib/master/utils/env-check.py [following]
--2020-02-03 21:28:06--  https://raw.githubusercontent.com/rapidsai/notebooks-contrib/master/utils/env-check.py
Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 151.101.0.133, 151.101.64.133, 151.101.128.133, ...
Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|151.101.0.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 918 [text/plain]
Saving to: ‘env-check.py’

env-check.py        100%[===================>]     918  --.-KB/s    in 0s      

2020-02-03 21:28:07 (54.9 MB/s) - ‘env-check.py’ saved [918/918]

Checking for GPU type:
***********************************************************************
Woo! Your instance has the right kind of GPU, a 'Tesla T4'!
***********************************************************************

Removing conflicting packages, will replace with RAPIDS compatible versions
Uninstalling xgboost-0.90:
  Successfully uninstalled xgboost-0.90
Uninstalling dask-2.9.2:
  Successfully uninstalled dask-2.9.2
Uninstalling distributed-1.25.3:
  Successfully uninstalled distributed-1.25.3
Installing conda
--2020-02-03 21:28:16--  https://repo.continuum.io/miniconda/Miniconda3-4.5.4-Linux-x86_64.sh
Resolving repo.continuum.io (repo.continuum.io)... 104.18.200.79, 104.18.201.79, 2606:4700::6812:c94f, ...
Connecting to repo.continuum.io (repo.continuum.io)|104.18.200.79|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 58468498 (56M) [application/x-sh]
Saving to: ‘Miniconda3-4.5.4-Linux-x86_64.sh’

Miniconda3-4.5.4-Li 100%[===================>]  55.76M   143MB/s    in 0.4s    

2020-02-03 21:28:17 (143 MB/s) - ‘Miniconda3-4.5.4-Linux-x86_64.sh’ saved [58468498/58468498]

PREFIX=/usr/local
installing: python-3.6.5-hc3d631a_2 ...
Python 3.6.5 :: Anaconda, Inc.
installing: ca-certificates-2018.03.07-0 ...
installing: conda-env-2.6.0-h36134e3_1 ...
installing: libgcc-ng-7.2.0-hdf63c60_3 ...
installing: libstdcxx-ng-7.2.0-hdf63c60_3 ...
installing: libffi-3.2.1-hd88cf55_4 ...
installing: ncurses-6.1-hf484d3e_0 ...
installing: openssl-1.0.2o-h20670df_0 ...
installing: tk-8.6.7-hc745277_3 ...
installing: xz-5.2.4-h14c3975_4 ...
installing: yaml-0.1.7-had09818_2 ...
installing: zlib-1.2.11-ha838bed_2 ...
installing: libedit-3.1.20170329-h6b74fdf_2 ...
installing: readline-7.0-ha6073c6_4 ...
installing: sqlite-3.23.1-he433501_0 ...
installing: asn1crypto-0.24.0-py36_0 ...
installing: certifi-2018.4.16-py36_0 ...
installing: chardet-3.0.4-py36h0f667ec_1 ...
installing: idna-2.6-py36h82fb2a8_1 ...
installing: pycosat-0.6.3-py36h0a5515d_0 ...
installing: pycparser-2.18-py36hf9f622e_1 ...
installing: pysocks-1.6.8-py36_0 ...
installing: ruamel_yaml-0.15.37-py36h14c3975_2 ...
installing: six-1.11.0-py36h372c433_1 ...
installing: cffi-1.11.5-py36h9745a5d_0 ...
installing: setuptools-39.2.0-py36_0 ...
installing: cryptography-2.2.2-py36h14c3975_0 ...
installing: wheel-0.31.1-py36_0 ...
installing: pip-10.0.1-py36_0 ...
installing: pyopenssl-18.0.0-py36_0 ...
installing: urllib3-1.22-py36hbe7ace6_0 ...
installing: requests-2.18.4-py36he2e5f8d_1 ...
installing: conda-4.5.4-py36_0 ...
installation finished.
WARNING:
    You currently have a PYTHONPATH environment variable set. This may cause
    unexpected behavior when running the Python interpreter in Miniconda3.
    For best results, please verify that your PYTHONPATH only points to
    directories of packages that are compatible with the Python interpreter
    in Miniconda3: /usr/local
Installing RAPIDS 0.10 packages from the stable release channel
Please standby, this will take a few minutes...
Solving environment: done


==> WARNING: A newer version of conda exists. <==
  current version: 4.5.4
  latest version: 4.8.2

Please update conda by running

    $ conda update -n base conda



## Package Plan ##

  environment location: /usr/local

  added / updated specs: 
    - cudatoolkit=10.1
    - cudf=0.10
    - cugraph
    - cuml
    - cuspatial
    - gcsfs
    - pynvml
    - python=3.6


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    wheel-0.34.2               |           py36_0          43 KB  conda-forge
    nccl-2.4.6.1               |       cuda10.1_0        66.9 MB  nvidia
    readline-8.0               |       hf8c457e_0         441 KB  conda-forge
    rsa-4.0                    |             py_0          27 KB  conda-forge
    urllib3-1.25.7             |           py36_0         160 KB  conda-forge
    bzip2-1.0.8                |       h516909a_2         396 KB  conda-forge
    cudatoolkit-10.1.243       |       h6bb024c_0       513.2 MB  nvidia
    arrow-cpp-0.14.1           |   py36h6b969ab_1        17.3 MB  conda-forge
    requests-2.22.0            |           py36_1          84 KB  conda-forge
    _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge
    sqlite-3.30.1              |       hcee41ef_0         2.0 MB  conda-forge
    parquet-cpp-1.5.1          |                2           3 KB  conda-forge
    librmm-0.10.0              |       cuda10.1_0          50 KB  rapidsai
    google-auth-oauthlib-0.4.1 |             py_1          18 KB  conda-forge
    gflags-2.2.2               |    he1b5a44_1002         175 KB  conda-forge
    pynvml-8.0.4               |             py_0          31 KB  conda-forge
    libevent-2.1.10            |       h72c5cf5_0         1.3 MB  conda-forge
    pysocks-1.7.1              |           py36_0          27 KB  conda-forge
    decorator-4.4.1            |             py_0          11 KB  conda-forge
    cuspatial-0.10.0           |           py36_0         456 KB  rapidsai
    libprotobuf-3.8.0          |       h8b12597_0         4.7 MB  conda-forge
    libopenblas-0.3.7          |       h5ec1e0e_6         7.6 MB  conda-forge
    cffi-1.13.2                |   py36h8022711_0         220 KB  conda-forge
    oauthlib-3.0.1             |             py_0          82 KB  conda-forge
    libcugraph-0.10.0          |       cuda10.1_0        16.1 MB  rapidsai
    numpy-1.18.1               |   py36h95a1406_0         5.2 MB  conda-forge
    fsspec-0.6.2               |             py_0          46 KB  conda-forge
    cachetools-3.1.1           |             py_0          11 KB  conda-forge
    xz-5.2.4                   |    h14c3975_1001         366 KB  conda-forge
    libnvstrings-0.10.0        |       cuda10.1_0        25.1 MB  rapidsai
    nvstrings-0.10.0           |           py36_0         126 KB  rapidsai
    libstdcxx-ng-9.2.0         |       hdf63c60_2         4.5 MB  conda-forge
    libcudf-0.10.0             |       cuda10.1_0        32.3 MB  rapidsai
    libgomp-9.2.0              |       h24d8f2e_2         816 KB  conda-forge
    liblapack-3.8.0            |      14_openblas          10 KB  conda-forge
    tk-8.6.10                  |       hed695b0_0         3.2 MB  conda-forge
    certifi-2019.11.28         |           py36_0         149 KB  conda-forge
    lz4-c-1.8.3                |    he1b5a44_1001         187 KB  conda-forge
    fastavro-0.22.9            |   py36h516909a_0         409 KB  conda-forge
    cudf-0.10.0                |           py36_0         7.2 MB  rapidsai
    cuml-0.10.0                |  cuda10.1_py36_0         6.6 MB  rapidsai
    libgfortran-ng-7.3.0       |       hdf63c60_5         1.7 MB  conda-forge
    setuptools-45.1.0          |           py36_0         642 KB  conda-forge
    libblas-3.8.0              |      14_openblas          10 KB  conda-forge
    zlib-1.2.11                |    h516909a_1006         105 KB  conda-forge
    libcumlprims-0.10.0        |       cuda10.1_0         4.2 MB  nvidia
    thrift-cpp-0.12.0          |    hf3afdfd_1004         2.4 MB  conda-forge
    cryptography-2.8           |   py36h72c5cf5_1         616 KB  conda-forge
    c-ares-1.15.0              |    h516909a_1001         100 KB  conda-forge
    chardet-3.0.4              |        py36_1003         190 KB  conda-forge
    gcsfs-0.6.0                |             py_0          19 KB  conda-forge
    rmm-0.10.0                 |           py36_0         135 KB  rapidsai
    uriparser-0.9.3            |       he1b5a44_1          49 KB  conda-forge
    grpc-cpp-1.25.0            |       h18db393_0         5.1 MB  conda-forge
    ca-certificates-2019.11.28 |       hecc5488_0         145 KB  conda-forge
    pandas-0.24.2              |   py36hb3f55d8_1        11.1 MB  conda-forge
    libcuml-0.10.0             |       cuda10.1_0        40.6 MB  rapidsai
    python-dateutil-2.8.1      |             py_0         220 KB  conda-forge
    python-3.6.7               |    h357f687_1006        34.6 MB  conda-forge
    pytz-2019.3                |             py_0         237 KB  conda-forge
    idna-2.8                   |        py36_1000         132 KB  conda-forge
    numba-0.48.0               |   py36hb3f55d8_0         3.4 MB  conda-forge
    brotli-1.0.7               |    he1b5a44_1000         1.0 MB  conda-forge
    pyjwt-1.7.1                |             py_0          17 KB  conda-forge
    llvmlite-0.31.0            |   py36h8b12597_0         337 KB  conda-forge
    cugraph-0.10.0             |           py36_0         1.7 MB  rapidsai
    libllvm8-8.0.1             |       hc9558a2_0        23.2 MB  conda-forge
    pip-20.0.2                 |           py36_1         1.9 MB  conda-forge
    libcblas-3.8.0             |      14_openblas          10 KB  conda-forge
    pycparser-2.19             |           py36_1         173 KB  conda-forge
    pyopenssl-19.1.0           |           py36_0          83 KB  conda-forge
    _openmp_mutex-4.5          |            0_gnu         435 KB  conda-forge
    snappy-1.1.7               |    he1b5a44_1003          39 KB  conda-forge
    boost-cpp-1.70.0           |       h8e57a91_2        21.1 MB  conda-forge
    openssl-1.1.1d             |       h516909a_0         2.1 MB  conda-forge
    libcuspatial-0.10.0        |       cuda10.1_0         1.6 MB  rapidsai
    cython-0.29.14             |   py36he1b5a44_0         2.2 MB  conda-forge
    pyasn1-0.4.8               |             py_0          53 KB  conda-forge
    glog-0.4.0                 |       he1b5a44_1         104 KB  conda-forge
    blinker-1.4                |             py_1          13 KB  conda-forge
    libffi-3.2.1               |    he1b5a44_1006          46 KB  conda-forge
    google-auth-1.11.0         |             py_0          47 KB  conda-forge
    six-1.14.0                 |           py36_0          23 KB  conda-forge
    libgcc-ng-9.2.0            |       h24d8f2e_2         8.2 MB  conda-forge
    ncurses-6.1                |    hf484d3e_1002         1.3 MB  conda-forge
    pyasn1-modules-0.2.7       |             py_0          60 KB  conda-forge
    re2-2020.01.01             |       he1b5a44_0         422 KB  conda-forge
    requests-oauthlib-1.2.0    |             py_0          19 KB  conda-forge
    zstd-1.4.0                 |       h3b9ef0a_0         928 KB  conda-forge
    double-conversion-3.1.5    |       he1b5a44_2          85 KB  conda-forge
    pyarrow-0.14.1             |   py36h8b68381_2         2.8 MB  conda-forge
    dlpack-0.2                 |       he1b5a44_1          13 KB  conda-forge
    icu-64.2                   |       he1b5a44_1        12.6 MB  conda-forge
    ------------------------------------------------------------
                                           Total:       905.8 MB

The following NEW packages will be INSTALLED:

    _libgcc_mutex:        0.1-conda_forge        conda-forge
    _openmp_mutex:        4.5-0_gnu              conda-forge
    arrow-cpp:            0.14.1-py36h6b969ab_1  conda-forge
    blinker:              1.4-py_1               conda-forge
    boost-cpp:            1.70.0-h8e57a91_2      conda-forge
    brotli:               1.0.7-he1b5a44_1000    conda-forge
    bzip2:                1.0.8-h516909a_2       conda-forge
    c-ares:               1.15.0-h516909a_1001   conda-forge
    cachetools:           3.1.1-py_0             conda-forge
    cudatoolkit:          10.1.243-h6bb024c_0    nvidia     
    cudf:                 0.10.0-py36_0          rapidsai   
    cugraph:              0.10.0-py36_0          rapidsai   
    cuml:                 0.10.0-cuda10.1_py36_0 rapidsai   
    cuspatial:            0.10.0-py36_0          rapidsai   
    cython:               0.29.14-py36he1b5a44_0 conda-forge
    decorator:            4.4.1-py_0             conda-forge
    dlpack:               0.2-he1b5a44_1         conda-forge
    double-conversion:    3.1.5-he1b5a44_2       conda-forge
    fastavro:             0.22.9-py36h516909a_0  conda-forge
    fsspec:               0.6.2-py_0             conda-forge
    gcsfs:                0.6.0-py_0             conda-forge
    gflags:               2.2.2-he1b5a44_1002    conda-forge
    glog:                 0.4.0-he1b5a44_1       conda-forge
    google-auth:          1.11.0-py_0            conda-forge
    google-auth-oauthlib: 0.4.1-py_1             conda-forge
    grpc-cpp:             1.25.0-h18db393_0      conda-forge
    icu:                  64.2-he1b5a44_1        conda-forge
    libblas:              3.8.0-14_openblas      conda-forge
    libcblas:             3.8.0-14_openblas      conda-forge
    libcudf:              0.10.0-cuda10.1_0      rapidsai   
    libcugraph:           0.10.0-cuda10.1_0      rapidsai   
    libcuml:              0.10.0-cuda10.1_0      rapidsai   
    libcumlprims:         0.10.0-cuda10.1_0      nvidia     
    libcuspatial:         0.10.0-cuda10.1_0      rapidsai   
    libevent:             2.1.10-h72c5cf5_0      conda-forge
    libgfortran-ng:       7.3.0-hdf63c60_5       conda-forge
    libgomp:              9.2.0-h24d8f2e_2       conda-forge
    liblapack:            3.8.0-14_openblas      conda-forge
    libllvm8:             8.0.1-hc9558a2_0       conda-forge
    libnvstrings:         0.10.0-cuda10.1_0      rapidsai   
    libopenblas:          0.3.7-h5ec1e0e_6       conda-forge
    libprotobuf:          3.8.0-h8b12597_0       conda-forge
    librmm:               0.10.0-cuda10.1_0      rapidsai   
    llvmlite:             0.31.0-py36h8b12597_0  conda-forge
    lz4-c:                1.8.3-he1b5a44_1001    conda-forge
    nccl:                 2.4.6.1-cuda10.1_0     nvidia     
    numba:                0.48.0-py36hb3f55d8_0  conda-forge
    numpy:                1.18.1-py36h95a1406_0  conda-forge
    nvstrings:            0.10.0-py36_0          rapidsai   
    oauthlib:             3.0.1-py_0             conda-forge
    pandas:               0.24.2-py36hb3f55d8_1  conda-forge
    parquet-cpp:          1.5.1-2                conda-forge
    pyarrow:              0.14.1-py36h8b68381_2  conda-forge
    pyasn1:               0.4.8-py_0             conda-forge
    pyasn1-modules:       0.2.7-py_0             conda-forge
    pyjwt:                1.7.1-py_0             conda-forge
    pynvml:               8.0.4-py_0             conda-forge
    python-dateutil:      2.8.1-py_0             conda-forge
    pytz:                 2019.3-py_0            conda-forge
    re2:                  2020.01.01-he1b5a44_0  conda-forge
    requests-oauthlib:    1.2.0-py_0             conda-forge
    rmm:                  0.10.0-py36_0          rapidsai   
    rsa:                  4.0-py_0               conda-forge
    snappy:               1.1.7-he1b5a44_1003    conda-forge
    thrift-cpp:           0.12.0-hf3afdfd_1004   conda-forge
    uriparser:            0.9.3-he1b5a44_1       conda-forge
    zstd:                 1.4.0-h3b9ef0a_0       conda-forge

The following packages will be UPDATED:

    ca-certificates:      2018.03.07-0                       --> 2019.11.28-hecc5488_0 conda-forge
    certifi:              2018.4.16-py36_0                   --> 2019.11.28-py36_0     conda-forge
    cffi:                 1.11.5-py36h9745a5d_0              --> 1.13.2-py36h8022711_0 conda-forge
    chardet:              3.0.4-py36h0f667ec_1               --> 3.0.4-py36_1003       conda-forge
    cryptography:         2.2.2-py36h14c3975_0               --> 2.8-py36h72c5cf5_1    conda-forge
    idna:                 2.6-py36h82fb2a8_1                 --> 2.8-py36_1000         conda-forge
    libffi:               3.2.1-hd88cf55_4                   --> 3.2.1-he1b5a44_1006   conda-forge
    libgcc-ng:            7.2.0-hdf63c60_3                   --> 9.2.0-h24d8f2e_2      conda-forge
    libstdcxx-ng:         7.2.0-hdf63c60_3                   --> 9.2.0-hdf63c60_2      conda-forge
    ncurses:              6.1-hf484d3e_0                     --> 6.1-hf484d3e_1002     conda-forge
    openssl:              1.0.2o-h20670df_0                  --> 1.1.1d-h516909a_0     conda-forge
    pip:                  10.0.1-py36_0                      --> 20.0.2-py36_1         conda-forge
    pycparser:            2.18-py36hf9f622e_1                --> 2.19-py36_1           conda-forge
    pyopenssl:            18.0.0-py36_0                      --> 19.1.0-py36_0         conda-forge
    pysocks:              1.6.8-py36_0                       --> 1.7.1-py36_0          conda-forge
    python:               3.6.5-hc3d631a_2                   --> 3.6.7-h357f687_1006   conda-forge
    readline:             7.0-ha6073c6_4                     --> 8.0-hf8c457e_0        conda-forge
    requests:             2.18.4-py36he2e5f8d_1              --> 2.22.0-py36_1         conda-forge
    setuptools:           39.2.0-py36_0                      --> 45.1.0-py36_0         conda-forge
    six:                  1.11.0-py36h372c433_1              --> 1.14.0-py36_0         conda-forge
    sqlite:               3.23.1-he433501_0                  --> 3.30.1-hcee41ef_0     conda-forge
    tk:                   8.6.7-hc745277_3                   --> 8.6.10-hed695b0_0     conda-forge
    urllib3:              1.22-py36hbe7ace6_0                --> 1.25.7-py36_0         conda-forge
    wheel:                0.31.1-py36_0                      --> 0.34.2-py36_0         conda-forge
    xz:                   5.2.4-h14c3975_4                   --> 5.2.4-h14c3975_1001   conda-forge
    zlib:                 1.2.11-ha838bed_2                  --> 1.2.11-h516909a_1006  conda-forge


Downloading and Extracting Packages
wheel-0.34.2         |   43 KB | : 100% 1.0/1 [00:00<00:00, 11.21it/s]
nccl-2.4.6.1         | 66.9 MB | : 100% 1.0/1 [00:10<00:00, 10.28s/it]               
readline-8.0         |  441 KB | : 100% 1.0/1 [00:00<00:00,  6.77it/s]               
rsa-4.0              |   27 KB | : 100% 1.0/1 [00:00<00:00,  8.07it/s]                
urllib3-1.25.7       |  160 KB | : 100% 1.0/1 [00:00<00:00, 10.98it/s]
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Preparing transaction: done
Verifying transaction: done
Executing transaction: done
rapids-colab.sh: line 95: dask-cudf: command not found

Steps/Code to reproduce bug
I directly copied the code from the above Medium post. Once I ran Step 3 (the installation of RAPIDS via the install script), I got the error above.

Expected behavior
The completed installation.

Environment details (please complete the following information):

  • Environment location: [Bare-metal, Docker, Cloud(specify cloud provider)]

Google Colab with GPU acceleration (proper GPU install confirmed with the successful completion of Step 2).

  • Method of RAPIDS libraries install: [conda, Docker, or from source]
    • If method of install is [Docker], provide docker pull & docker run commands used
    • If other methods, provide the commands used

rapids-colab.sh via wget.

Additional context
Add any other context about the problem here.

None.
@cj2001 cj2001 added the bug Something isn't working label Feb 3, 2020
@cj2001 cj2001 changed the title [BUG] RAL|\Louvain demo notebook [BUG] Louvain demo notebook Feb 5, 2020
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