diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index b376f07ca8..8447183ca1 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -69,8 +69,7 @@ repos:
                 CMakeLists[.]txt$|
                 CMakeLists_standalone[.]txt$|
                 [.]flake8[.]cython$|
-                meta[.]yaml$|
-                setup[.]cfg$
+                meta[.]yaml$
           exclude: |
             (?x)
                 cpp/src/tsne/cannylab/bh[.]cu$|
diff --git a/BUILD.md b/BUILD.md
index 059836e57d..e67f674372 100644
--- a/BUILD.md
+++ b/BUILD.md
@@ -234,7 +234,6 @@ cuML's cmake has the following configurable flags available:
 | BUILD_PRIMS_TESTS | [ON, OFF]  | ON  | Enable/disable building cuML algorithm test executable `prims_test`.  |
 | BUILD_CUML_EXAMPLES | [ON, OFF]  | ON  | Enable/disable building cuML C++ API usage examples.  |
 | BUILD_CUML_BENCH | [ON, OFF] | ON | Enable/disable building of cuML C++ benchark.  |
-| BUILD_CUML_PRIMS_BENCH | [ON, OFF] | ON | Enable/disable building of ml-prims C++ benchark.  |
 | CMAKE_CXX11_ABI | [ON, OFF]  | ON  | Enable/disable the GLIBCXX11 ABI  |
 | DETECT_CONDA_ENV | [ON, OFF] | ON | Use detection of conda environment for dependencies. If set to ON, and no value for CMAKE_INSTALL_PREFIX is passed, then it'll assign it to $CONDA_PREFIX (to install in the active environment).  |
 | DISABLE_OPENMP | [ON, OFF]  | OFF  | Set to `ON` to disable OpenMP  |
diff --git a/cpp/README.md b/cpp/README.md
index fc85d23288..10ffa01617 100644
--- a/cpp/README.md
+++ b/cpp/README.md
@@ -37,7 +37,6 @@ Current cmake offers the following configuration options:
 | BUILD_PRIMS_TESTS | [ON, OFF]  | ON  | Enable/disable building cuML algorithm test executable `prims_test`.  |
 | BUILD_CUML_EXAMPLES | [ON, OFF]  | ON  | Enable/disable building cuML C++ API usage examples.  |
 | BUILD_CUML_BENCH | [ON, OFF]  | ON  | Enable/disable building of cuML C++ benchark. |
-| BUILD_CUML_PRIMS_BENCH | [ON, OFF]  | ON  | Enable/disable building of ml-prims C++ benchark. |
 | BUILD_CUML_STD_COMMS | [ON, OFF] | ON | Enable/disable building cuML NCCL+UCX communicator for running multi-node multi-GPU algorithms. Note that UCX support can also be enabled/disabled (see below). The standard communicator and MPI communicator are not mutually exclusive and can both be installed at the same time. |
 | WITH_UCX | [ON, OFF] | OFF | Enable/disable UCX support in the standard cuML communicator. Algorithms requiring point-to-point messaging will not work when this is disabled. This flag is ignored if BUILD_CUML_STD_COMMS is set to OFF. |
 | BUILD_CUML_MPI_COMMS | [ON, OFF] | OFF | Enable/disable building cuML MPI+NCCL communicator for running multi-node multi-GPU C++ tests. MPI communicator and STD communicator may both be installed at the same time. If OFF, it overrides BUILD_CUML_MG_TESTS to be OFF as well. |
diff --git a/cpp/cmake/thirdparty/get_raft.cmake b/cpp/cmake/thirdparty/get_raft.cmake
index dbfff6d1f2..3240c730c5 100644
--- a/cpp/cmake/thirdparty/get_raft.cmake
+++ b/cpp/cmake/thirdparty/get_raft.cmake
@@ -54,7 +54,6 @@ function(find_and_configure_raft)
         EXCLUDE_FROM_ALL       ${PKG_EXCLUDE_FROM_ALL}
         OPTIONS
           "BUILD_TESTS OFF"
-          "BUILD_BENCH OFF"
           "BUILD_PRIMS_BENCH OFF"
           "BUILD_CAGRA_HNSWLIB OFF"
           "RAFT_COMPILE_LIBRARY OFF"
diff --git a/python/cuml/CMakeLists.txt b/python/cuml/CMakeLists.txt
index 221b5ebf75..1dcaecc92f 100644
--- a/python/cuml/CMakeLists.txt
+++ b/python/cuml/CMakeLists.txt
@@ -83,14 +83,12 @@ if(NOT CUML_CPU)
     set(BUILD_CUML_C_LIBRARY OFF)
     set(BUILD_CUML_EXAMPLES OFF)
     set(BUILD_CUML_BENCH OFF)
-    set(BUILD_CUML_PRIMS_BENCH OFF)
     set(CUML_EXPORT_TREELITE_LINKAGE ON)
     set(CUML_PYTHON_TREELITE_TARGET treelite::treelite_static)
 
     # Statically link dependencies if building wheels
     set(CUDA_STATIC_RUNTIME ON)
     set(CUML_USE_CUVS_STATIC ON)
-    set(CUML_USE_FAISS_STATIC ON)
     set(CUML_USE_TREELITE_STATIC ON)
     set(CUML_USE_CUMLPRIMS_MG_STATIC ON)
     # Link to the CUDA wheels with shared libraries for CUDA 12+