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environment.yml
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name: mla
channels:
- defaults
- https://conda.anaconda.org/bioconda
- https://conda.anaconda.org/conda-forge
- main
- r
- conda-forge
- bioconda
- pytorch
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- art=2016.06.05=h589041f_9
- bbmap=38.86=h1296035_0
- boost-cpp=1.78.0=h2c5509c_4
- bzip2=1.0.8=hd590300_5
- c-ares=1.19.1=h5eee18b_0
- ca-certificates=2024.2.2=hbcca054_0
- curl=8.5.0=hdbd6064_0
- expat=2.5.0=h6a678d5_0
- gdbm=1.18=hd4cb3f1_4
- gettext=0.21.0=h39681ba_1
- git=2.40.1=pl5340h36fbf9e_1
- graphaligner=1.0.17b=h21ec9f0_2
- gsl=2.7=he838d99_0
- htslib=1.19=h81da01d_0
- icu=73.2=h59595ed_0
- jemalloc=5.2.0=he1b5a44_0
- krb5=1.20.1=h143b758_1
- ld_impl_linux-64=2.40=h41732ed_0
- libblas=3.9.0=21_linux64_openblas
- libcblas=3.9.0=21_linux64_openblas
- libcurl=8.5.0=h251f7ec_0
- libdeflate=1.19=hd590300_0
- libdivsufsort=2.0.2=h031d066_8
- libedit=3.1.20230828=h5eee18b_0
- libev=4.33=h7f8727e_1
- libffi=3.4.2=h7f98852_5
- libgcc-ng=13.2.0=h807b86a_5
- libgfortran-ng=13.2.0=h69a702a_5
- libgfortran5=13.2.0=ha4646dd_5
- libgomp=13.2.0=h807b86a_5
- liblapack=3.9.0=21_linux64_openblas
- libnghttp2=1.57.0=h2d74bed_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.26=pthreads_h413a1c8_0
- libprotobuf=3.14.0=h780b84a_0
- libsqlite=3.45.2=h2797004_0
- libssh2=1.10.0=hdbd6064_2
- libstdcxx-ng=13.2.0=h7e041cc_5
- libuuid=2.38.1=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.10.4=hf1b16e4_1
- libzlib=1.2.13=hd590300_5
- ncurses=6.4=h59595ed_2
- numpy=1.26.0=py39h474f0d3_0
- openjdk=11.0.1=h516909a_1016
- openssl=3.2.1=hd590300_1
- pandas=2.1.1=py39hddac248_1
- pbccs=6.4.0=h9ee0642_0
- pbsim3=3.0.0=h4ac6f70_0
- pbzip2=1.1.13=h1fcc475_2
- pcre2=10.42=hebb0a14_0
- perl=5.34.0=h5eee18b_2
- pip=23.3.1=py39h06a4308_0
- protobuf=3.14.0=py39he80948d_1
- python=3.9.18=h0755675_1_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python_abi=3.9=4_cp39
- pytz=2024.1=pyhd8ed1ab_0
- readline=8.2=h8228510_1
- samtools=1.17=hd87286a_2
- setuptools=69.2.0=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- tk=8.6.13=noxft_h4845f30_101
- tzdata=2024a=h0c530f3_0
- wheel=0.42.0=pyhd8ed1ab_0
- xz=5.4.6=h5eee18b_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0