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gff on gtf #184

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ntsopoul opened this issue Feb 10, 2023 · 1 comment
Open

gff on gtf #184

ntsopoul opened this issue Feb 10, 2023 · 1 comment

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@ntsopoul
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Hi,

I have aligned files (mouse mm10 genome) aligned with STAR with .gtf files for annotation. Spladder requires .gff files. Can I use the corresponding .gff (same org. same annotation)?
@akahles
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akahles commented Feb 10, 2023

Dear @ntsopoul ,

SplAdder also works with gtf files. So you can provide the same gtf as you used for the alignment.

Best,

Andre

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@akahles @ntsopoul