snakefile.template

import os

configfile: "run.json"
abc="a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z".split(",")
BS=50

samples=sorted(list(config['project']['units'].keys()))
n=int(len(samples)/BS)
if len(samples)%BS !=0:
    n=n+1
batches=abc[0:n]


pairs=sorted(list(config['project']['pairs'].keys()))

pfamily=config['project']['pfamily']