diff --git a/pages/2025-01-29-report.md b/pages/2025-01-29-report.md new file mode 100644 index 0000000..8e7e371 --- /dev/null +++ b/pages/2025-01-29-report.md @@ -0,0 +1,9 @@ +--- +title: "SARS-CoV-2 Variant Hub Weekly Report" +include-in-header: + file: includes/in-header.html +include-after-body: + file: includes/after-body.html +--- + +{{< include includes/2025-01-29-report.html >}} diff --git a/pages/includes/2025-01-29-report.html b/pages/includes/2025-01-29-report.html new file mode 100644 index 0000000..3829145 --- /dev/null +++ b/pages/includes/2025-01-29-report.html @@ -0,0 +1,111 @@ + + + +

This report summarizes predictions submitted on January 29, +2025 and was generated on January 30, 2025 14:10:50.

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Plots of data and nowcasts

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The interactive plots below summarize recent data and predictions of +SARS-CoV-2 clades. Variants are labeled using both the correspnding +Nextstrain clade and the associated pango lineage (e.g., “24A (JN.1)”). +Recent observations are summaries of genomic sequence metadata from +GenBank, made available as the +“full open” datasets from Nextstrain. The points representing +observed clade frequencies in a given week are transparent black dots. +The size of the point corresponds to the total number of sequences (of +all clades) in that state for that week (the specific number is visible +when you hover on a specific point). Note that proportions from the most +recently observed week are likely to change as new data arrives in +future weeks. Points representing the clade proportion from each +prediction model are shown as open circles of different colors. For +simplicity, we show just the prediction from the Saturday from each +week. The vertical gray line indicates the date on which submissions for +this round were due.

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diff --git a/site-config.yml b/site-config.yml index 2523b6b..644adfa 100644 --- a/site-config.yml +++ b/site-config.yml @@ -4,6 +4,8 @@ title: "SARS-CoV-2 Variant Nowcast Hub" pages: - text: "Reports" menu: + - text: "2025-01-29" + href: "2025-01-29-report.md" - text: "2025-01-22" href: "2025-01-22-report.md" - text: "2025-01-15"