ValueError: too many values to unpack

[carmelinacharalambous]

Issue encountered when running iAnnotateSV. Failed sample C-HAT9MW-L002-d02 in Project 13893_F.

Lines that are failing iAnnotateSV with the error mentioned below:

chr1	pos1	str1	chr2	pos2	str2
17	61138841	0	6	31940159	1
6	31940159	1	17	61138841	0

error message:
File "/work/bergerm1/bergerlab/charalk/misc/troubleshoot_13893_F/iAnnotateSV/iAnnotateSV/AnnotationForKinaseDomain.py", line 131, in processData transcriptIdx, = (transcripts[transcripts['chrom'] == chrom].index) ValueError: too many values to unpack

Look at lines 128-136 in AnnotationForKinaseDomain.py

Location chr6 31940159 refers to gene FNDC1
Location chr17 61138841 refers to gene TP53

Error files and test data can be found at /work/bergerm1/bergerlab/charalk/misc/troubleshoot_13893_F/

@rhshah