From 09b95ce7bad2968c8ab45f66fb61c72b2f2cdbe9 Mon Sep 17 00:00:00 2001 From: Kent Riemondy Date: Mon, 22 Apr 2024 09:18:26 -0600 Subject: [PATCH] - add R minimum version to prevent warning about data checks ASCII and uncompressed saves - remove unused hsPBMC_markers.txt data file --- DESCRIPTION | 3 ++- data-raw/hsPBMC_markers.txt | 29 ----------------------------- 2 files changed, 2 insertions(+), 30 deletions(-) delete mode 100644 data-raw/hsPBMC_markers.txt diff --git a/DESCRIPTION b/DESCRIPTION index 1041173a2..77b9aef7c 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: clustifyr Title: Classifier for Single-cell RNA-seq Using Cell Clusters -Version: 1.15.3 +Version: 1.15.4 Description: Package designed to aid in classifying cells from single-cell RNA sequencing data using external reference data (e.g., bulk RNA-seq, scRNA-seq, microarray, gene lists). A variety of correlation based methods and gene list enrichment methods are provided to assist cell @@ -41,6 +41,7 @@ Authors@R: person("RNA Bioscience Initiative", role = c("fnd", "cph")) ) License: MIT + file LICENSE +Depends: R (>= 2.10) Imports: cowplot, dplyr, diff --git a/data-raw/hsPBMC_markers.txt b/data-raw/hsPBMC_markers.txt deleted file mode 100644 index 8d81d7785..000000000 --- a/data-raw/hsPBMC_markers.txt +++ /dev/null @@ -1,29 +0,0 @@ ->CD34+ -expressed: CD34, THY1, ENG, KIT, PROM1 -references: https://www.stemcell.com/human-hematopoietic-stem-and-progenitor-cell-phenotyping-panels.html, https://www.rndsystems.com/research-area/hematopoietic-stem-cell-markers - ->NK cells -expressed: NCAM1, FCGR3A -references: https://www.biolegend.com/essential_markers - ->Monocytes -expressed: CD14, FCGR1A, CD68, S100A12 -references: https://www.biolegend.com/essential_markers - ->B cells -expressed: CD19, MS4A1, CD79A - ->T cells -expressed: CD3D, CD3E, CD3G - ->CD4 T cells -expressed: CD4, FOXP3, IL2RA, IL7R -subtype of: T cells - ->CD8 T cells -expressed: CD8A, CD8B -subtype of: T cells - ->Dendritic cells -expressed: IL3RA, CD1C, BATF3, THBD, CD209 -references: https://www.biolegend.com/essential_markers, https://www.cell.com/pb-assets/products/nucleus/nucleus-phagocytes/rnd-systems-dendritic-cells-br.pdf