From 72fd27c2233d23dfd51c99f35ef04a4c59545560 Mon Sep 17 00:00:00 2001 From: github-actions Date: Wed, 24 Jan 2024 01:05:02 +0000 Subject: [PATCH] Automated deployment to update software database 2024-01-24 --- _repos/github/emunte/vaRHC/DESCRIPTION | 2 +- _repos/github/fogellab/multiWGCNA/DESCRIPTION | 2 +- _repos/github/kanaverse/kana/package.json | 2 +- .../github/ksahlin/strobealign/CMakeLists.txt | 6 +- .../stillwater-sc/universal/CMakeLists.txt | 115 ++++++++++-------- 5 files changed, 69 insertions(+), 58 deletions(-) diff --git a/_repos/github/emunte/vaRHC/DESCRIPTION b/_repos/github/emunte/vaRHC/DESCRIPTION index 43e5e0e1..3b73304e 100644 --- a/_repos/github/emunte/vaRHC/DESCRIPTION +++ b/_repos/github/emunte/vaRHC/DESCRIPTION @@ -1,6 +1,6 @@ Package: vaRHC Title: Variant Classification in Hereditary Cancer Following Specific ACMG/AMP Guidelines -Version: 0.0.9 +Version: 3.0.0 Authors@R: person("Elisabet", "Munté Roca", diff --git a/_repos/github/fogellab/multiWGCNA/DESCRIPTION b/_repos/github/fogellab/multiWGCNA/DESCRIPTION index b89b72e0..4d4d6ee8 100644 --- a/_repos/github/fogellab/multiWGCNA/DESCRIPTION +++ b/_repos/github/fogellab/multiWGCNA/DESCRIPTION @@ -1,7 +1,7 @@ Package: multiWGCNA Type: Package Title: multiWGCNA -Version: 1.1.1 +Version: 1.1.2 Authors@R: c( person("Dario", "Tommasini", email="dtommasini0@gmail.com", role = c("aut","cre"), diff --git a/_repos/github/kanaverse/kana/package.json b/_repos/github/kanaverse/kana/package.json index 5dbd3af4..54a99617 100644 --- a/_repos/github/kanaverse/kana/package.json +++ b/_repos/github/kanaverse/kana/package.json @@ -1,7 +1,7 @@ { "name": "kana", "description": "Single-cell data analysis in the browser", - "version": "3.0.20", + "version": "3.0.21", "author": { "name": "Jayaram Kancherla", "email": "jayaram.kancherla@gmail.com", diff --git a/_repos/github/ksahlin/strobealign/CMakeLists.txt b/_repos/github/ksahlin/strobealign/CMakeLists.txt index 19ace7a2..988b1235 100644 --- a/_repos/github/ksahlin/strobealign/CMakeLists.txt +++ b/_repos/github/ksahlin/strobealign/CMakeLists.txt @@ -25,11 +25,7 @@ endif() message(STATUS "Build type: ${CMAKE_BUILD_TYPE}") add_compile_options(-Wall -Wextra -Werror=maybe-uninitialized) -FetchContent_Declare(ZStrGitRepo - GIT_REPOSITORY "https://github.com/mateidavid/zstr" - GIT_TAG "755da7890ea22478a702e3139092e6c964fab1f5" -) -FetchContent_MakeAvailable(ZStrGitRepo) +add_subdirectory(ext/zstr) # Obtain version from Git or fall back to PROJECT_VERSION if not building # from a Git repository diff --git a/_repos/github/stillwater-sc/universal/CMakeLists.txt b/_repos/github/stillwater-sc/universal/CMakeLists.txt index 7c05aa31..c48b2c4c 100644 --- a/_repos/github/stillwater-sc/universal/CMakeLists.txt +++ b/_repos/github/stillwater-sc/universal/CMakeLists.txt @@ -10,17 +10,7 @@ include(tools/cmake/banners.cmake) print_header() #### -# Set minimum version of CMake. Since we are using the VERSION option of the -# project command, we need at least 3.0. To honor the amazing work that -# the folks at KitWare have done for the open-source community, we are -# going to specify a recent version. -# As of UNIVERSAL v3.0 December 2019 -# Ubuntu 16.04 LTS runs cmake 3.5 -# Ubuntu 18.04 LTS runs cmake 3.10 -# Ubuntu 20.04 LTS runs cmake 3.16 -# Ubuntu 22.04 LTS runs cmake 3.22 -# container runs cmake 3.7.1 -# gcc5 container runs cmake 3.0.2 +# Set minimum version of CMake. cmake_minimum_required(VERSION 3.22) #### @@ -35,7 +25,7 @@ if(NOT DEFINED UNIVERSAL_VERSION_MAJOR) set(UNIVERSAL_VERSION_MAJOR 3) endif() if(NOT DEFINED UNIVERSAL_VERSION_MINOR) - set(UNIVERSAL_VERSION_MINOR 74) + set(UNIVERSAL_VERSION_MINOR 75) endif() if(NOT DEFINED UNIVERSAL_VERSION_PATCH) set(UNIVERSAL_VERSION_PATCH 1) @@ -221,34 +211,53 @@ set(CMAKE_CXX_STANDARD_REQUIRED ON) message(STATUS "C++20 has been enabled by default") # enable the regression testing level of the build -if(BUILD_REGRESSION_SANITY OR BUILD_REGRESSION_LEVEL_1) +#debug messages to troubleshoot regression level build configuration +#message(STATUS "BUILD_REGRESSION_STRESS ${BUILD_REGRESSION_STRESS} ") +#message(STATUS "BUILD_REGRESSION_SANITY ${BUILD_REGRESSION_SANITY} ") +#message(STATUS "BUILD_REGRESSION_LEVEL_1 ${BUILD_REGRESSION_LEVEL_1} ") +#message(STATUS "BUILD_REGRESSION_LEVEL_2 ${BUILD_REGRESSION_LEVEL_2} ") +#message(STATUS "BUILD_REGRESSION_LEVEL_3 ${BUILD_REGRESSION_LEVEL_3} ") +#message(STATUS "BUILD_REGRESSION_LEVEL_4 ${BUILD_REGRESSION_LEVEL_4} ") +if(BUILD_REGRESSION_STRESS) + message(STATUS "BUILD_REGRESSION_STRESS ${BUILD_REGRESSION_STRESS}") + set(BUILD_REGRESSION_LEVEL_4 ON) + set(BUILD_REGRESSION_SANITY OFF) +elseif(BUILD_REGRESSION_SANITY) + message(STATUS "BUILD_REGRESSION_SANITY ${BUILD_REGRESSION_SANITY}") + set(BUILD_REGRESSION_LEVEL_1 ON) +endif(BUILD_REGRESSION_STRESS) + +if(BUILD_REGRESSION_LEVEL_4) + message(STATUS "BUILD_REGRESSION_LEVEL_4 ${BUILD_REGRESSION_LEVEL_4}") add_definitions(-D REGRESSION_LEVEL_OVERRIDE) add_definitions(-D REGRESSION_LEVEL_1=1) - add_definitions(-D REGRESSION_LEVEL_2=0) - add_definitions(-D REGRESSION_LEVEL_3=0) - add_definitions(-D REGRESSION_LEVEL_4=0) -endif(BUILD_REGRESSION_SANITY OR BUILD_REGRESSION_LEVEL_1) -if(BUILD_REGRESSION_LEVEL_2) + add_definitions(-D REGRESSION_LEVEL_2=1) + add_definitions(-D REGRESSION_LEVEL_3=1) + add_definitions(-D REGRESSION_LEVEL_4=1) +elseif(BUILD_REGRESSION_LEVEL_3) + message(STATUS "BUILD_REGRESSION_LEVEL_3 ${BUILD_REGRESSION_LEVEL_3}") add_definitions(-D REGRESSION_LEVEL_OVERRIDE) add_definitions(-D REGRESSION_LEVEL_1=1) add_definitions(-D REGRESSION_LEVEL_2=1) - add_definitions(-D REGRESSION_LEVEL_3=0) + add_definitions(-D REGRESSION_LEVEL_3=1) add_definitions(-D REGRESSION_LEVEL_4=0) -endif(BUILD_REGRESSION_LEVEL_2) -if(BUILD_REGRESSION_LEVEL_3) +elseif(BUILD_REGRESSION_LEVEL_2) + message(STATUS "BUILD_REGRESSION_LEVEL_2 ${BUILD_REGRESSION_LEVEL_2}") add_definitions(-D REGRESSION_LEVEL_OVERRIDE) add_definitions(-D REGRESSION_LEVEL_1=1) add_definitions(-D REGRESSION_LEVEL_2=1) - add_definitions(-D REGRESSION_LEVEL_3=1) + add_definitions(-D REGRESSION_LEVEL_3=0) add_definitions(-D REGRESSION_LEVEL_4=0) -endif(BUILD_REGRESSION_LEVEL_3) -if(BUILD_REGRESSION_STRESS OR BUILD_REGRESSION_LEVEL_4) +elseif(BUILD_REGRESSION_LEVEL_1) + message(STATUS "BUILD_REGRESSION_LEVEL_1 ${BUILD_REGRESSION_LEVEL_1}") add_definitions(-D REGRESSION_LEVEL_OVERRIDE) - add_definitions(-D REGRESSION_LEVEL_1) - add_definitions(-D REGRESSION_LEVEL_2) - add_definitions(-D REGRESSION_LEVEL_3) - add_definitions(-D REGRESSION_LEVEL_4) -endif(BUILD_REGRESSION_STRESS OR BUILD_REGRESSION_LEVEL_4) + add_definitions(-D REGRESSION_LEVEL_1=1) + add_definitions(-D REGRESSION_LEVEL_2=0) + add_definitions(-D REGRESSION_LEVEL_3=0) + add_definitions(-D REGRESSION_LEVEL_4=0) +else(BUILD_REGRESSION_LEVEL_4) + message(STATUS "Nothing has been set") +endif(BUILD_REGRESSION_LEVEL_4) # Compiler specific environments if(CMAKE_COMPILER_IS_GNUCXX OR MINGW OR CMAKE_CXX_COMPILER_ID MATCHES "Clang") @@ -890,28 +899,34 @@ endif(BUILD_PLAYGROUND) # application examples if(BUILD_APPLICATIONS) -add_subdirectory("applications/approximation") -add_subdirectory("applications/blas") -add_subdirectory("applications/chaos") -add_subdirectory("applications/chebyshev") -add_subdirectory("applications/complex") -add_subdirectory("applications/constants") -add_subdirectory("applications/cryptography") -add_subdirectory("applications/dnn") -add_subdirectory("applications/dsp") -add_subdirectory("applications/engineering") -add_subdirectory("applications/floating-point") -add_subdirectory("applications/math") -add_subdirectory("applications/numeric") -add_subdirectory("applications/ode") -add_subdirectory("applications/optimization") -add_subdirectory("applications/pde") -add_subdirectory("applications/roots") -add_subdirectory("applications/science") -add_subdirectory("applications/sequences") +add_subdirectory("applications/accuracy/engineering") +add_subdirectory("applications/accuracy/ode") +add_subdirectory("applications/accuracy/optimization") +add_subdirectory("applications/accuracy/pde") +add_subdirectory("applications/accuracy/roots") +add_subdirectory("applications/accuracy/science") + +add_subdirectory("applications/approximation/taylor") +add_subdirectory("applications/approximation/chebyshev") + +add_subdirectory("applications/mixed-precision/dnn") +add_subdirectory("applications/mixed-precision/dsp") + +add_subdirectory("applications/performance/chaos") +add_subdirectory("applications/performance/complex") +add_subdirectory("applications/performance/stream") +add_subdirectory("applications/performance/weather") + +add_subdirectory("applications/precision/constants") +add_subdirectory("applications/precision/floating-point") +add_subdirectory("applications/precision/math") +add_subdirectory("applications/precision/numeric") + +add_subdirectory("applications/reproducibility/blas") +add_subdirectory("applications/reproducibility/cryptography") +add_subdirectory("applications/reproducibility/sequences") + add_subdirectory("applications/stl") -add_subdirectory("applications/stream") -add_subdirectory("applications/weather") endif(BUILD_APPLICATIONS) ##################################################################