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run_viper() error #74

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ejfertig opened this issue Jan 15, 2025 · 0 comments
Open

run_viper() error #74

ejfertig opened this issue Jan 15, 2025 · 0 comments

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@ejfertig
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I'm trying to run the example provided for run_viper() in the documentation for this package but am getting the following error when using the code directly:

library(bcellViper)
data(bcellViper, package = "bcellViper")

acessing (human) dorothea regulons

for mouse regulons: data(dorothea_mm, package = "dorothea")

data(dorothea_hs, package = "dorothea")

run viper

tf_activities <- run_viper(dset, dorothea_hs,

  •                        options =  list(method = "scale", minsize = 4,
    
  •                                        eset.filter = FALSE, cores = 1,
    
  •                                        verbose = FALSE))
    

Error in .check_expected_columns():
! Output columns are different than expected.
Expected: source, target, mor, likelihood
Extra:
Removed: source
Run rlang::last_trace() to see where the error occurred.

Thought welcome.

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