Error when pulling Sicilian; not part of nfcore?

[demar01]

I have checked the following places for your error:

• nf-core website: troubleshooting
• nf-core/sicilian pipeline documentation

Hi Sicilian team

Thanks for developing this tool. It looks very promising! I am trying to use it but I get this error when pulling the pipeline with

nextflow run nf-core/sicilian -profile test docker

WARN: Cannot read project manifest -- Cause: Remote resource not found: https://api.github.com/repos/nf-core/sicilian/contents/nextflow.config

Moverover, Sicilian does not seem to be a part of nfcore pipelines? This site does not exist https://nf-co.re/sicilian/usage

Thanks for clarifying!

[MEFarhadieh]

Thanks for this great tool. I have the same issue too.

[juliaolivieri]

Hello, can you try running nextflow run salzmanlab/nf-sicilian -profile test -r dev ?

[MEFarhadieh]

Dear @juliaolivieri , thanks so much for your reply. It is work, but there is an error.

[juliaolivieri]

Are you running SICILIAN within the conda environment?

$ wget https://raw.githubusercontent.com/salzmanlab/nf-sicilian/dev/environment.yml
$ conda env create --name sicilian_env --file=environment.yml
$ conda activate sicilian_env