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Error converting Seurat object to cell_data_set, bug fix no longer exists #189

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azurocha opened this issue Apr 30, 2024 · 1 comment

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@azurocha
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When I run this function: merge_all_filtered <- SeuratWrappers::as.cell_data_set(merge_all_filtered)
I get:
Error in slot(object = *tmp*, name = "preprocess_aux") :
no slot of name "preprocess_aux" for this object of class "cell_data_set".
I found previous threads (#120) where
remotes::install_github('tfrayner/seurat-wrappers', ref='monocle3-conversion-bugfix')
fixed the issue but this commit is no longer there:
HTTP error 404.
No commit found for the ref monocle3-conversion-bugfix.

Do you have any suggestions as to how to proceed?

@corralee
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corralee commented May 2, 2024

I'm using Seurat 4.3 and it worked for me by installing the commit 02754e1 with remotes::install_github('satijalab/seurat-wrappers@02754e1517e51a5ee093e8c2f247b49f85ee2d40')

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