v0.11.1

webknossos

Added

• Dataset.from_images and dataset.add_layer_from_images have new features: #842
  • dm3 and dm4 datasets can be read without bioformats now.
  • It's possible to completely disable the bioformats adapter by setting use_bioformats to False.
  • Lists of images can now be handled with other readers, before only images supported by skimage worked in lists.

wkcuber

Changed

• Improved perfomance of wkcuber.tile_cubing and making it more robust. #840

cluster_tools

Changed

• When using the slurm or pbs distribution strategy, scheduled jobs are automatically canceled when aborting a run, i.e. if the SIGINT signal is received. #838

v0.11.0

webknossos

Breaking Changes

• Removed the id attribute of the BoundingBox class, also from the constructor. #836

Fixed

• Fixed bounding box serialization in NMLs, so that bounding boxes which are uploaded via annotations are now recognized properly by webKnossos. #836
• Bounding boxes keep their name, color and visibility when transformed via methods, such as bbox.padded_with_margins(). #836

v0.10.27

webknossos

Added

• Short links, such as https://webknossos.org/links/93zLg9U9vJ3c_UWp, are now supported for dataset and annotation urls in download and open_remote methods. #837

v0.10.26

webknossos

Changed

• Dataset.from_images and dataset.add_layer_from_images now try to import the images via the bioformats after all other options as well. #829

Fixed

• dataset.add_layer_from_images can now handle paths to folders which only contain a single image. #829

v0.10.25

webknossos

Breaking Changes

• Dataset.from_images now adds a layer per timepoint and per channel (if the data doesn't have 1 or 3 channels). #822

Added

• Added python-native CZI support for Dataset.from_images or dataset.add_layer_from_images, without using bioformats. #822
• dataset.add_layer_from_images can add a layer per timepoint and per channel when passing allow_multiple_layers=True. #822

v0.10.24

webknossos

Changed

• Updated cattrs dependency to 22.2.0. #819

wkcuber

Changed

• Updated cattrs dependency to 22.2.0. #819

v0.10.23

webknossos

Breaking Changes

• ds.add_layer_from_images: Turned some arguments into keyword-only arguments, only affecting positional arguments after the first 8 arguments. #818

Added

• ds.add_layer_from_images: added topleft and dtype kw-only arguments. #818

v0.10.22

webknossos

Fixed

• Fixed a bug where some image sequences could not be read in layer_from_images. #817

v0.10.21

Relaxed the version requirements for the tifffile and imagecodecs libraries

v0.10.20

webknossos

Changed

• Make volume locations optional, allowing to parse segment information in future NML-only annotations. #814

Fixed

• annotation.temporary_volume_layer_copy() works also with empty volume annotations. #814