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Aim: adding a page in the docs to help methods developers that want to use SpatialData in their tools.
The page could cover the following, showing how SpatialData could be used at various levels:
Only downstream. E.g. visualization: one could handle everything outside SpatialData and just export to SpatialData to access napari-spatialdata, spatialdata-plot and soon vitessce
Only upstream. E.g. data ingestion: one could use spatialdata-io to read the raw data from common techs into xarray/geopandas/anndata objects and forget about SpatialData objects
Fully integrated. E.g. SOPA, bento-tools, squidpy: SpatialData is used as a core data structure for internal representation and (to different degrees) object manipulation.
The text was updated successfully, but these errors were encountered:
Regarding the fully integrated section:
We want to add small demos of tools that are using SpatialData as a backend: bento (@ckmah), Sopa, squidpy, ...
Aim: adding a page in the docs to help methods developers that want to use SpatialData in their tools.
The page could cover the following, showing how SpatialData could be used at various levels:
The text was updated successfully, but these errors were encountered: