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environment.yml
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name: vcalling
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- aioeasywebdav=2.4.0=pyha770c72_0
- aiohttp=3.8.1=py310h6acc77f_0
- aiosignal=1.2.0=pyhd8ed1ab_0
- amply=0.1.4=py_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- atk-1.0=2.36.0=h3371d22_4
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=21.4.0=pyhd8ed1ab_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcftools=1.3.1=h5bf99c6_7
- bcrypt=3.2.0=py310h6acc77f_2
- boto3=1.21.22=pyhd8ed1ab_0
- botocore=1.24.22=pyhd8ed1ab_0
- brotli=1.0.9=h7f98852_6
- brotli-bin=1.0.9=h7f98852_6
- brotlipy=0.7.0=py310h6acc77f_1003
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2022.2.1=h06a4308_0
- cachetools=5.0.0=pyhd8ed1ab_0
- cairo=1.16.0=ha12eb4b_1010
- certifi=2021.10.8=py310hff52083_1
- cffi=1.15.0=py310h0fdd8cc_0
- charset-normalizer=2.0.12=pyhd8ed1ab_0
- coin-or-cbc=2.10.7=h3786ebc_0
- coin-or-cgl=0.60.3=he7e83c3_2
- coin-or-clp=1.17.6=h256e9bb_3
- coin-or-osi=0.108.6=h3b589db_2
- coin-or-utils=2.11.6=h573740c_0
- coincbc=2.10.7=0_metapackage
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cryptography=36.0.0=py310h9ce1e76_0
- cycler=0.11.0=pyhd8ed1ab_0
- datrie=0.8.2=py310h6acc77f_3
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.18.1=py310hff52083_0
- dropbox=11.28.0=pyhd8ed1ab_0
- expat=2.4.7=h27087fc_0
- fftw=3.3.10=nompi_h77c792f_102
- filechunkio=1.8=py_2
- filelock=3.6.0=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.96=h8e229c2_2
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.31.1=py310h5764c6d_0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.3.0=py310h6acc77f_0
- ftputil=5.0.3=pyhd8ed1ab_0
- gatk4=4.2.5.0=hdfd78af_0
- gdk-pixbuf=2.42.6=h04a7f16_0
- gettext=0.19.8.1=h73d1719_1008
- ghostscript=9.54.0=h27087fc_2
- giflib=5.2.1=h36c2ea0_2
- gitdb=4.0.9=pyhd8ed1ab_0
- gitpython=3.1.27=pyhd8ed1ab_0
- google-api-core=2.5.0=pyhd8ed1ab_0
- google-api-python-client=2.41.0=pyhd8ed1ab_0
- google-auth=2.6.2=pyh6c4a22f_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_0
- google-cloud-core=2.2.2=pyh6c4a22f_0
- google-cloud-storage=2.1.0=pyh6c4a22f_0
- google-crc32c=1.1.2=py310h82b6597_2
- google-resumable-media=2.1.0=pyh6c4a22f_0
- googleapis-common-protos=1.56.0=py310hff52083_0
- graphite2=1.3.13=h58526e2_1001
- graphviz=3.0.0=h5abf519_1
- grpcio=1.44.0=py310ha6b4e5e_0
- gtk2=2.24.33=h90689f9_2
- gts=0.7.6=h64030ff_2
- harfbuzz=4.0.1=h40b6f09_0
- httplib2=0.20.4=pyhd8ed1ab_0
- icu=69.1=h9c3ff4c_0
- idna=3.3=pyhd8ed1ab_0
- imagemagick=7.1.0_27=pl5321heb7c40d_1
- importlib-metadata=4.11.3=py310hff52083_0
- importlib_resources=5.4.0=pyhd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- jbig=2.1=h7f98852_2003
- jinja2=3.0.3=pyhd8ed1ab_0
- jmespath=1.0.0=pyhd8ed1ab_0
- jpeg=9e=h7f98852_0
- jsonschema=4.4.0=pyhd8ed1ab_0
- jupyter_core=4.9.2=py310hff52083_0
- kiwisolver=1.4.0=py310hbf28c38_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=3.0=h9c3ff4c_0
- libblas=3.9.0=13_linux64_openblas
- libbrotlicommon=1.0.9=h7f98852_6
- libbrotlidec=1.0.9=h7f98852_6
- libbrotlienc=1.0.9=h7f98852_6
- libcblas=3.9.0=13_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libdeflate=1.10=h7f98852_0
- libffi=3.4.2=h7f98852_5
- libgcc-ng=11.2.0=h1d223b6_14
- libgd=2.3.3=h283352f_2
- libgfortran-ng=11.2.0=h69a702a_14
- libgfortran5=11.2.0=h5c6108e_14
- libglib=2.70.2=h174f98d_4
- libgomp=11.2.0=h1d223b6_14
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=13_linux64_openblas
- liblapacke=3.9.0=13_linux64_openblas
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.18=pthreads_h8fe5266_0
- libpng=1.6.37=h21135ba_2
- libprotobuf=3.19.4=h780b84a_0
- librsvg=2.52.5=h0a9e6e8_2
- libsodium=1.0.18=h36c2ea0_1
- libstdcxx-ng=11.2.0=he4da1e4_14
- libtiff=4.3.0=h542a066_3
- libtool=2.4.6=h9c3ff4c_1008
- libuuid=2.32.1=h7f98852_1000
- libwebp=1.2.2=h3452ae3_0
- libwebp-base=1.2.2=h7f98852_1
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.12=h885dcf4_1
- libzlib=1.2.11=h36c2ea0_1013
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.3=h9c3ff4c_1
- markupsafe=2.1.1=py310h5764c6d_0
- matplotlib-base=3.5.1=py310h23f4a51_0
- multidict=6.0.2=py310h6acc77f_0
- munkres=1.1.4=pyh9f0ad1d_0
- nbformat=5.2.0=pyhd8ed1ab_0
- ncurses=6.3=h9c3ff4c_0
- networkx=2.7.1=pyhd8ed1ab_0
- numpy=1.22.3=py310h45f3432_0
- oauth2client=4.1.3=py_0
- openjdk=8.0.152=h7b6447c_3
- openjpeg=2.4.0=hb52868f_1
- openssl=3.0.0=h7f98852_2
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.4.1=py310hb5077e9_0
- pango=1.50.6=hbd2fdc8_0
- paramiko=2.10.3=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- peppy=0.31.2=pyhd8ed1ab_2
- perl=5.32.1=2_h7f98852_perl5
- pillow=9.0.1=py310he619898_2
- pip=22.0.4=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkg-config=0.29.2=h36c2ea0_1008
- plac=1.3.4=pyhd8ed1ab_0
- pluggy=1.0.0=py310hff52083_2
- ply=3.11=py_1
- prettytable=3.2.0=pyhd8ed1ab_0
- protobuf=3.19.4=py310h122e73d_0
- psutil=5.9.0=py310h6acc77f_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.6.0=py310hff52083_0
- py=1.11.0=pyh6c4a22f_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.11.2=pyhd8ed1ab_0
- pygraphviz=1.7=py310h7f8727e_1
- pynacl=1.5.0=py310h6acc77f_0
- pyopenssl=22.0.0=pyhd8ed1ab_0
- pyparsing=3.0.7=pyhd8ed1ab_0
- pyrsistent=0.18.1=py310h6acc77f_0
- pysftp=0.2.9=py_1
- pysocks=1.7.1=py310hff52083_4
- pytest=7.1.1=py310hff52083_0
- python=3.10.2=hc74c709_4_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-irodsclient=1.1.2=pyhd8ed1ab_0
- python_abi=3.10=2_cp310
- pytz=2021.3=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0=py310h6acc77f_3
- ratelimiter=1.2.0=py_1002
- readline=8.1=h46c0cb4_0
- requests=2.27.1=pyhd8ed1ab_0
- retry=0.9.2=py_0
- rsa=4.8=pyhd8ed1ab_0
- s3transfer=0.5.2=pyhd8ed1ab_0
- scipy=1.8.0=py310hea5193d_1
- setuptools=60.10.0=py310hff52083_0
- setuptools-scm=6.4.2=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=5.2.1=pyhd8ed1ab_0
- smmap=3.0.5=pyh44b312d_0
- snakemake=6.11.1=hdfd78af_0
- snakemake-minimal=6.11.1=pyhdfd78af_0
- sqlite=3.37.1=h4ff8645_0
- stone=3.3.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- tabix=0.2.6=ha92aebf_0
- tabulate=0.8.9=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- tomli=2.0.1=pyhd8ed1ab_0
- toposort=1.7=pyhd8ed1ab_0
- traitlets=5.1.1=pyhd8ed1ab_0
- typing-extensions=4.1.1=hd8ed1ab_0
- typing_extensions=4.1.1=pyha770c72_0
- tzdata=2022a=h191b570_0
- ubiquerg=0.6.1=pyh9f0ad1d_0
- unicodedata2=14.0.0=py310h6acc77f_0
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=1.26.9=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.37.1=pyhd8ed1ab_0
- wrapt=1.14.0=py310h5764c6d_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h7f98852_2
- yarl=1.7.2=py310h6acc77f_1
- yte=1.2.0=py310hff52083_0
- zipp=3.7.0=pyhd8ed1ab_1
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.5.2=ha95c52a_0
prefix: /home/icb/sergey.vilov/miniconda3/envs/vcalling