diff --git a/go.mod b/go.mod new file mode 100644 index 00000000..3ec73692 --- /dev/null +++ b/go.mod @@ -0,0 +1,10 @@ +module github.com/sjwhitworth/golearn + +go 1.14 + +require ( + github.com/smartystreets/goconvey v1.6.4 + golang.org/x/exp v0.0.0-20200228211341-fcea875c7e85 // indirect + golang.org/x/tools v0.0.0-20200308013534-11ec41452d41 // indirect + gonum.org/v1/gonum v0.7.0 +) diff --git a/go.sum b/go.sum new file mode 100644 index 00000000..e39a0ad3 --- /dev/null +++ b/go.sum @@ -0,0 +1,60 @@ +dmitri.shuralyov.com/gpu/mtl v0.0.0-20190408044501-666a987793e9/go.mod h1:H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU= +github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo= +github.com/ajstarks/svgo v0.0.0-20180226025133-644b8db467af/go.mod h1:K08gAheRH3/J6wwsYMMT4xOr94bZjxIelGM0+d/wbFw= +github.com/fogleman/gg v1.2.1-0.20190220221249-0403632d5b90/go.mod h1:R/bRT+9gY/C5z7JzPU0zXsXHKM4/ayA+zqcVNZzPa1k= +github.com/go-gl/glfw/v3.3/glfw v0.0.0-20200222043503-6f7a984d4dc4/go.mod h1:tQ2UAYgL5IevRw8kRxooKSPJfGvJ9fJQFa0TUsXzTg8= +github.com/golang/freetype v0.0.0-20170609003504-e2365dfdc4a0/go.mod h1:E/TSTwGwJL78qG/PmXZO1EjYhfJinVAhrmmHX6Z8B9k= +github.com/gopherjs/gopherjs v0.0.0-20181017120253-0766667cb4d1 h1:EGx4pi6eqNxGaHF6qqu48+N2wcFQ5qg5FXgOdqsJ5d8= +github.com/gopherjs/gopherjs v0.0.0-20181017120253-0766667cb4d1/go.mod h1:wJfORRmW1u3UXTncJ5qlYoELFm8eSnnEO6hX4iZ3EWY= +github.com/jtolds/gls v4.20.0+incompatible h1:xdiiI2gbIgH/gLH7ADydsJ1uDOEzR8yvV7C0MuV77Wo= +github.com/jtolds/gls v4.20.0+incompatible/go.mod h1:QJZ7F/aHp+rZTRtaJ1ow/lLfFfVYBRgL+9YlvaHOwJU= +github.com/jung-kurt/gofpdf v1.0.3-0.20190309125859-24315acbbda5/go.mod h1:7Id9E/uU8ce6rXgefFLlgrJj/GYY22cpxn+r32jIOes= +github.com/smartystreets/assertions v0.0.0-20180927180507-b2de0cb4f26d h1:zE9ykElWQ6/NYmHa3jpm/yHnI4xSofP+UP6SpjHcSeM= +github.com/smartystreets/assertions v0.0.0-20180927180507-b2de0cb4f26d/go.mod h1:OnSkiWE9lh6wB0YB77sQom3nweQdgAjqCqsofrRNTgc= +github.com/smartystreets/goconvey v1.6.4 h1:fv0U8FUIMPNf1L9lnHLvLhgicrIVChEkdzIKYqbNC9s= +github.com/smartystreets/goconvey v1.6.4/go.mod h1:syvi0/a8iFYH4r/RixwvyeAJjdLS9QV7WQ/tjFTllLA= +golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w= +golang.org/x/crypto v0.0.0-20191011191535-87dc89f01550/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI= +golang.org/x/exp v0.0.0-20180321215751-8460e604b9de/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= +golang.org/x/exp v0.0.0-20180807140117-3d87b88a115f/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= +golang.org/x/exp v0.0.0-20190125153040-c74c464bbbf2 h1:y102fOLFqhV41b+4GPiJoa0k/x+pJcEi2/HB1Y5T6fU= +golang.org/x/exp v0.0.0-20190125153040-c74c464bbbf2/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= +golang.org/x/exp v0.0.0-20190306152737-a1d7652674e8/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= +golang.org/x/exp v0.0.0-20200228211341-fcea875c7e85 h1:jqhIzSw5SQNkbu5hOGpgMHhkfXxrbsLJdkIRcX19gCY= +golang.org/x/exp v0.0.0-20200228211341-fcea875c7e85/go.mod h1:4M0jN8W1tt0AVLNr8HDosyJCDCDuyL9N9+3m7wDWgKw= +golang.org/x/image v0.0.0-20180708004352-c73c2afc3b81/go.mod h1:ux5Hcp/YLpHSI86hEcLt0YII63i6oz57MZXIpbrjZUs= +golang.org/x/image v0.0.0-20190227222117-0694c2d4d067/go.mod h1:kZ7UVZpmo3dzQBMxlp+ypCbDeSB+sBbTgSJuh5dn5js= +golang.org/x/image v0.0.0-20190802002840-cff245a6509b/go.mod h1:FeLwcggjj3mMvU+oOTbSwawSJRM1uh48EjtB4UJZlP0= +golang.org/x/mobile v0.0.0-20190719004257-d2bd2a29d028/go.mod h1:E/iHnbuqvinMTCcRqshq8CkpyQDoeVncDDYHnLhea+o= +golang.org/x/mod v0.1.1-0.20191105210325-c90efee705ee/go.mod h1:QqPTAvyqsEbceGzBzNggFXnrqF1CaUcvgkdR5Ot7KZg= +golang.org/x/mod v0.1.1-0.20191107180719-034126e5016b/go.mod h1:QqPTAvyqsEbceGzBzNggFXnrqF1CaUcvgkdR5Ot7KZg= +golang.org/x/mod v0.2.0/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA= +golang.org/x/net v0.0.0-20190311183353-d8887717615a/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg= +golang.org/x/net v0.0.0-20190404232315-eb5bcb51f2a3/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg= +golang.org/x/net v0.0.0-20190620200207-3b0461eec859/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= +golang.org/x/net v0.0.0-20200226121028-0de0cce0169b/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= +golang.org/x/sync v0.0.0-20190423024810-112230192c58/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= +golang.org/x/sync v0.0.0-20190911185100-cd5d95a43a6e/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= +golang.org/x/sys v0.0.0-20190215142949-d0b11bdaac8a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= +golang.org/x/sys v0.0.0-20190312061237-fead79001313/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= +golang.org/x/sys v0.0.0-20190412213103-97732733099d/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= +golang.org/x/sys v0.0.0-20191001151750-bb3f8db39f24/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= +golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ= +golang.org/x/tools v0.0.0-20180525024113-a5b4c53f6e8b/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= +golang.org/x/tools v0.0.0-20190206041539-40960b6deb8e h1:Io7mpb+aUAGF0MKxbyQ7HQl1VgB+cL6ZJZUFaFNqVV4= +golang.org/x/tools v0.0.0-20190206041539-40960b6deb8e/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= +golang.org/x/tools v0.0.0-20190328211700-ab21143f2384/go.mod h1:LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs= +golang.org/x/tools v0.0.0-20191119224855-298f0cb1881e/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo= +golang.org/x/tools v0.0.0-20200207183749-b753a1ba74fa/go.mod h1:TB2adYChydJhpapKDTa4BR/hXlZSLoq2Wpct/0txZ28= +golang.org/x/tools v0.0.0-20200308013534-11ec41452d41 h1:9Di9iYgOt9ThCipBxChBVhgNipDoE5mxO84rQV7D0FE= +golang.org/x/tools v0.0.0-20200308013534-11ec41452d41/go.mod h1:o4KQGtdN14AW+yjsvvwRTJJuXz8XRtIHtEnmAXLyFUw= +golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0= +golang.org/x/xerrors v0.0.0-20191011141410-1b5146add898/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0= +golang.org/x/xerrors v0.0.0-20191204190536-9bdfabe68543/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0= +gonum.org/v1/gonum v0.0.0-20180816165407-929014505bf4/go.mod h1:Y+Yx5eoAFn32cQvJDxZx5Dpnq+c3wtXuadVZAcxbbBo= +gonum.org/v1/gonum v0.7.0 h1:Hdks0L0hgznZLG9nzXb8vZ0rRvqNvAcgAp84y7Mwkgw= +gonum.org/v1/gonum v0.7.0/go.mod h1:L02bwd0sqlsvRv41G7wGWFCsVNZFv/k1xzGIxeANHGM= +gonum.org/v1/netlib v0.0.0-20190313105609-8cb42192e0e0 h1:OE9mWmgKkjJyEmDAAtGMPjXu+YNeGvK9VTSHY6+Qihc= +gonum.org/v1/netlib v0.0.0-20190313105609-8cb42192e0e0/go.mod h1:wa6Ws7BG/ESfp6dHfk7C6KdzKA7wR7u/rKwOGE66zvw= +gonum.org/v1/plot v0.0.0-20190515093506-e2840ee46a6b/go.mod h1:Wt8AAjI+ypCyYX3nZBvf6cAIx93T+c/OS2HFAYskSZc= +rsc.io/pdf v0.1.1/go.mod h1:n8OzWcQ6Sp37PL01nO98y4iUCRdTGarVfzxY20ICaU4= diff --git a/knn/knn.go b/knn/knn.go index 0ce44fac..91bc6617 100644 --- a/knn/knn.go +++ b/knn/knn.go @@ -7,7 +7,6 @@ import ( "errors" "fmt" - "github.com/gonum/matrix" "github.com/sjwhitworth/golearn/base" "github.com/sjwhitworth/golearn/kdtree" "github.com/sjwhitworth/golearn/metrics/pairwise" @@ -430,7 +429,7 @@ func NewKnnRegressor(distfunc string) *KNNRegressor { func (KNN *KNNRegressor) Fit(values []float64, numbers []float64, rows int, cols int) { if rows != len(values) { - panic(matrix.ErrShape) + panic(mat.ErrShape) } KNN.Data = mat.NewDense(rows, cols, numbers) diff --git a/linear_models/linear_regression.go b/linear_models/linear_regression.go index eb52c4e5..5df4b938 100644 --- a/linear_models/linear_regression.go +++ b/linear_models/linear_regression.go @@ -6,7 +6,7 @@ import ( "github.com/sjwhitworth/golearn/base" "fmt" - _ "github.com/gonum/blas" + _ "gonum.org/v1/gonum/blas" "gonum.org/v1/gonum/mat" ) diff --git a/metrics/pairwise/chebyshev.go b/metrics/pairwise/chebyshev.go index 23a6fb18..8eed3fff 100644 --- a/metrics/pairwise/chebyshev.go +++ b/metrics/pairwise/chebyshev.go @@ -3,7 +3,6 @@ package pairwise import ( "math" - "github.com/gonum/matrix" "gonum.org/v1/gonum/mat" ) @@ -17,7 +16,7 @@ func (c *Chebyshev) Distance(vectorX *mat.Dense, vectorY *mat.Dense) float64 { r1, c1 := vectorX.Dims() r2, c2 := vectorY.Dims() if r1 != r2 || c1 != c2 { - panic(matrix.ErrShape) + panic(mat.ErrShape) } max := float64(0) diff --git a/metrics/pairwise/cranberra.go b/metrics/pairwise/cranberra.go index eb36f6ce..671143f5 100644 --- a/metrics/pairwise/cranberra.go +++ b/metrics/pairwise/cranberra.go @@ -3,7 +3,6 @@ package pairwise import ( "math" - "github.com/gonum/matrix" "gonum.org/v1/gonum/mat" ) @@ -24,7 +23,7 @@ func (c *Cranberra) Distance(vectorX *mat.Dense, vectorY *mat.Dense) float64 { r1, c1 := vectorX.Dims() r2, c2 := vectorY.Dims() if r1 != r2 || c1 != c2 { - panic(matrix.ErrShape) + panic(mat.ErrShape) } sum := .0 diff --git a/metrics/pairwise/manhattan.go b/metrics/pairwise/manhattan.go index 29c9ba9c..f355fec8 100644 --- a/metrics/pairwise/manhattan.go +++ b/metrics/pairwise/manhattan.go @@ -3,7 +3,6 @@ package pairwise import ( "math" - "github.com/gonum/matrix" "gonum.org/v1/gonum/mat" ) @@ -19,7 +18,7 @@ func (m *Manhattan) Distance(vectorX *mat.Dense, vectorY *mat.Dense) float64 { r1, c1 := vectorX.Dims() r2, c2 := vectorY.Dims() if r1 != r2 || c1 != c2 { - panic(matrix.ErrShape) + panic(mat.ErrShape) } result := .0