[QUERY] Can I test UNCALLED to always try and map only 2000 raw samples from FAST5

[harisankarsadasivan]

@skovaka However long a read maybe, I want to always test UNCALLED by letting it map only 2000 samples from a read, offline.
How may I achieve this?
Is changing the for loop limits here sufficient or do I need to do more? Would adapter trimming be taken care of?

[skovaka]

I just added options to adjust the chunk size and time in uncalled map. Try running with the options --chunk-time 0.5 --max-chunks 1, which will set the maximum number of samples to 4000*0.5*1 = 2000. You'll have to pull the latest version and reinstall to see those options. UNCALLED doesn't do any adapter trimming, so that won't be affected. Hope that helps!