From 255c20fd3bed94112796366d6abf63b2914f0f5f Mon Sep 17 00:00:00 2001
From: guilhermesena1 <desenabr@usc.edu>
Date: Thu, 20 Jan 2022 12:02:06 -0800
Subject: [PATCH] peparing for 2.0.0

---
 Makefile.am     | 2 +-
 configure.ac    | 2 +-
 src/abismal.cpp | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/Makefile.am b/Makefile.am
index 8d297c6..7613aed 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -22,7 +22,7 @@ SUBDIRS := src/smithlab_cpp
 install installdirs: SUBDIRS := $(filter-out src/smithlab_cpp, $(SUBDIRS))
 AM_CPPFLAGS = -I $(top_srcdir)/src/smithlab_cpp
 
-CXXFLAGS = -O3 -funroll-loops  # default has optimization on
+CXXFLAGS = -O3  # default has optimization on
 AM_CXXFLAGS = $(OPENMP_CXXFLAGS)
 
 LDADD = src/smithlab_cpp/libsmithlab_cpp.a
diff --git a/configure.ac b/configure.ac
index ce58995..edef7d3 100644
--- a/configure.ac
+++ b/configure.ac
@@ -14,7 +14,7 @@ dnl but WITHOUT ANY WARRANTY; without even the implied warranty of
 dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 dnl General Public License for more details.
 
-AC_INIT([abismal], [1.0.0], [andrewds@usc.edu],
+AC_INIT([abismal], [2.0.0], [andrewds@usc.edu],
         [abismal], [https://github.com/smithlabcode/abismal])
 
 dnl the config.h is not currently #included in the source, and only
diff --git a/src/abismal.cpp b/src/abismal.cpp
index 2b3d5da..bd7373c 100644
--- a/src/abismal.cpp
+++ b/src/abismal.cpp
@@ -1721,7 +1721,7 @@ run_paired_ended(const bool VERBOSE,
 int main(int argc, const char **argv) {
 
   try {
-    static const string ABISMAL_VERSION = "1.0.0";
+    static const string ABISMAL_VERSION = "2.0.0";
     bool VERBOSE = false;
     bool GA_conversion = false;
     bool allow_ambig = false;