From b830f602041ee75ffeafa49e973293c1f0915b22 Mon Sep 17 00:00:00 2001
From: Andrew D Smith <andrewds@usc.edu>
Date: Thu, 21 Nov 2024 16:09:55 -0800
Subject: [PATCH 1/2] Bumping to version 1.2.5

---
 configure.ac        | 2 +-
 src/FalcoConfig.cpp | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/configure.ac b/configure.ac
index 87c6b13..f8798a8 100644
--- a/configure.ac
+++ b/configure.ac
@@ -14,7 +14,7 @@ dnl  WITHOUT ANY WARRANTY; without even the implied warranty of
 dnl  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 dnl  General Public License for more details.
 
-AC_INIT([falco], [1.2.4], [andrewds@usc.edu],
+AC_INIT([falco], [1.2.5], [andrewds@usc.edu],
         [falco], [https://github.com/smithlabcode/falco])
 dnl the config.h is not currently #included in the source, and only
 dnl used to keep command lines short.
diff --git a/src/FalcoConfig.cpp b/src/FalcoConfig.cpp
index 3da63a5..747bfd6 100644
--- a/src/FalcoConfig.cpp
+++ b/src/FalcoConfig.cpp
@@ -35,7 +35,7 @@ using std::runtime_error;
 using std::istringstream;
 using std::cerr;
 
-const string FalcoConfig::FalcoVersion = "1.2.4";
+const string FalcoConfig::FalcoVersion = "1.2.5";
 
 /*********************************************************/
 /************** DEFAULT VALUES FOR FILES *****************/

From d58728896afb9c071e8101691ba0106a1e813295 Mon Sep 17 00:00:00 2001
From: Andrew D Smith <andrewds@usc.edu>
Date: Thu, 21 Nov 2024 16:10:28 -0800
Subject: [PATCH 2/2] test/md5sum.txt: Changing test file hashes for falco
 version number change

---
 test/md5sum.txt | 30 +++++++++++++++---------------
 1 file changed, 15 insertions(+), 15 deletions(-)

diff --git a/test/md5sum.txt b/test/md5sum.txt
index 53618c6..cc38a41 100644
--- a/test/md5sum.txt
+++ b/test/md5sum.txt
@@ -1,30 +1,30 @@
-2ae7d1f0b23ade3abf414775fe5271f6  test_output/SRR1853178_1/fastqc_data.txt
+fe1d421b95e1289f62d5f60157b8bed0  test_output/SRR1853178_1/fastqc_data.txt
 36df1dcab539ba4ef885239fc8524636  test_output/SRR1853178_1/summary.txt
-c41ff03b370ae915191a9f6fe8bc678d  test_output/SRR3897196_2/fastqc_data.txt
+19c984bdddd5d656e8bb9f50bb08fc5a  test_output/SRR3897196_2/fastqc_data.txt
 80cd130958bcb2219f1e5a07d06a3b6e  test_output/SRR3897196_2/summary.txt
-8b5740c93686b4bfdcca1395b624e6c1  test_output/SRR9624732_1/fastqc_data.txt
+eafecdffa8aa5357c70e3df61704d5c8  test_output/SRR9624732_1/fastqc_data.txt
 a525d455b17eb6ba84cd2a60d281a2b0  test_output/SRR9624732_1/summary.txt
-c865b11c168cff8e2cfaba00496d5677  test_output/SRR10143153_2/fastqc_data.txt
+9bb60254ebbca76328a0fc5c7d35d38f  test_output/SRR10143153_2/fastqc_data.txt
 19f1811f324e4c44154f659bb6e22806  test_output/SRR10143153_2/summary.txt
-08ddd4e548a740d47f3e72e5aee8cace  test_output/SRR1772703.lite.1/fastqc_data.txt
+b5b45d94670c42ddff565d53ff9b34e8  test_output/SRR1772703.lite.1/fastqc_data.txt
 ad5727295e7c8de6eb6874837bf1518f  test_output/SRR1772703.lite.1/summary.txt
-d36fb2c29f64579f59b6d5fc25b46d28  test_output/SRR9624732_2/fastqc_data.txt
+3844262fde0e6c1bfeb6f3d12da3e483  test_output/SRR9624732_2/fastqc_data.txt
 fefc5d746f853c14b5e00421ad1ec260  test_output/SRR9624732_2/summary.txt
-17a878d48d7fa0bb51b88f90a36560c0  test_output/SRR10124060/fastqc_data.txt
+e7b534295a334f21f143daf0209708a1  test_output/SRR10124060/fastqc_data.txt
 776f7d1b53bbed8683de9ca1d2529f1e  test_output/SRR10124060/summary.txt
-531f6f0fb00c2501091a532b449801d2  test_output/SRR891268_2/fastqc_data.txt
+38556ea8d058797f2e30b48c30fe77c6  test_output/SRR891268_2/fastqc_data.txt
 20a8e50baace4c672622793874a3d7de  test_output/SRR891268_2/summary.txt
-892908fa8151938e8d24b672a44f346b  test_output/SRR9878537.lite.1/fastqc_data.txt
+3cc125e2b29921e9369194616941b9e3  test_output/SRR9878537.lite.1/fastqc_data.txt
 e5c40997d4993c07e164ee5598c39cf9  test_output/SRR9878537.lite.1/summary.txt
-146dcc6ae882b426f6e0b9ad19b8bce3  test_output/SRR891268_1/fastqc_data.txt
+f9ebe6a18e4438a79d535baa59d6a629  test_output/SRR891268_1/fastqc_data.txt
 69e7d0c53cd2e67117637c408b65333a  test_output/SRR891268_1/summary.txt
-e9529a7d22fb8c988bf75acb0add561f  test_output/SRR6059706.lite.1/fastqc_data.txt
+f11a39a545f2469161c7502c56082ee3  test_output/SRR6059706.lite.1/fastqc_data.txt
 e348e4bcc7fc6f05e989ac7858d2b287  test_output/SRR6059706.lite.1/summary.txt
-d9d80a77687184aad86c87f580bcc635  test_output/SRR6387347/fastqc_data.txt
+753bb1af5e2cf52a38e5d7b3d2c2f39b  test_output/SRR6387347/fastqc_data.txt
 a61f65047e76f93300967cf399d044de  test_output/SRR6387347/summary.txt
-c36ba896d89cfbe7afe1d9d5b47f51ef  test_output/SRR3897196_1/fastqc_data.txt
+513957b15a848d5eb29ca8e5c2ed0c45  test_output/SRR3897196_1/fastqc_data.txt
 b736ee95d5c450ef5c0dda31957b6818  test_output/SRR3897196_1/summary.txt
-7a05aab668bb538c50abe8e9eb92a9c1  test_output/SRR10143153_1/fastqc_data.txt
+2297ae14b668630cb547aacfd2da992f  test_output/SRR10143153_1/fastqc_data.txt
 9ad191925d47a57d4f8b12f21ba0a7c3  test_output/SRR10143153_1/summary.txt
-79f2f80161718ddf6cfc7c70affc43ca  test_output/SRR1853178_2/fastqc_data.txt
+255171890adc7117a5c4fae6d355091e  test_output/SRR1853178_2/fastqc_data.txt
 c331d0f7a6aa9d72be41ac531f9ba269  test_output/SRR1853178_2/summary.txt